mRNA_S-ischiensis_contig1.141.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.141.1
Unique NamemRNA_S-ischiensis_contig1.141.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:883669..885097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size875
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.141.1prot_S-ischiensis_contig1.141.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 883796..884440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.2015388-UTR-S-ischiensis_contig1:883668..8837951622815364.2015388-UTR-S-ischiensis_contig1:883668..883795Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 883669..883795 -
1695739661.3130639-UTR-S-ischiensis_contig1:883668..8837951695739661.3130639-UTR-S-ischiensis_contig1:883668..883795Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 883669..883795 -
1622815364.2270086-UTR-S-ischiensis_contig1:884440..8844981622815364.2270086-UTR-S-ischiensis_contig1:884440..884498Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 884441..884498 -
1695739661.3342874-UTR-S-ischiensis_contig1:884440..8844981695739661.3342874-UTR-S-ischiensis_contig1:884440..884498Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 884441..884498 -
1622815364.2385197-UTR-S-ischiensis_contig1:885052..8850971622815364.2385197-UTR-S-ischiensis_contig1:885052..885097Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 885053..885097 -
1695739661.3449118-UTR-S-ischiensis_contig1:885052..8850971695739661.3449118-UTR-S-ischiensis_contig1:885052..885097Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 885053..885097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.2160625-CDS-S-ischiensis_contig1:883795..8844401622815364.2160625-CDS-S-ischiensis_contig1:883795..884440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 883796..884440 -
1695739661.3245595-CDS-S-ischiensis_contig1:883795..8844401695739661.3245595-CDS-S-ischiensis_contig1:883795..884440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 883796..884440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.141.1

>prot_S-ischiensis_contig1.141.1 ID=prot_S-ischiensis_contig1.141.1|Name=mRNA_S-ischiensis_contig1.141.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=215bp
MWRDSETLRDAARTRPPGGPGHHSGLTSLFKPSTGLGGGPGQHPGGEPEP
EGQRPEHHGHRRGRRGPGSSHGTATGMPRAGAAAEPGLRAGPGGLNFNLK
LRSRAAAGGVSRRTLGQPEFDSRARRSGAVSPSAGQHRWHGHGRGGRAVG
SGSGVWSPGRPGRRAWYGGDDRSDASESDPVKPEALEYRGNGDSLGPVWR
DGSGSDTDWGVFPA*
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mRNA from alignment at S-ischiensis_contig1:883669..885097-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.141.1 ID=mRNA_S-ischiensis_contig1.141.1|Name=mRNA_S-ischiensis_contig1.141.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1429bp|location=Sequence derived from alignment at S-ischiensis_contig1:883669..885097- (Schizocladia ischiensis KU_0333)
GGGGTGTCCGGCGCGGGTGCGGAGGGAACCGGTGGCCAAGCTGAGGTATG
AGTGAGCGCTTGCTTGCTTGCACATTGGCAGGCCTACCACTGCTTGTTGC
TTTAAGAAGTACGGAGAGCTCTGCATCTATAGTGCTTCTGTGCCGCTTCG
AAGTTGGTAGGTTGTACGAAGTGCACCGCTGTATTGTAGTACTTCGAAGC
ACCATCCTGTGCTGCTGTGCTGTTGCAGTGCAGTGCTCTGCTGCCTCTGC
TGCAGTAGTGCTGCTTAGAAGCACTGCTACTTGCTCCAAGTACAGTAGCC
CTGTGGCCAAGTACAACCTGGAGCCTATAAAACTCGTGGCACGGCGGCAC
CGCAGCCATTGGGTGCCACCCCATTGCATGCCACATCACTCAGTACACAC
CTACTCCGAAGCACACGTAGTCGAATGCGCTGTACACGCGCGCTTCTTCA
CGCCGCCGCCTTCCACGATCGGCGATCACGCATCCCTCCCAAATGCGCGG
CCGCCGTATCACTCAACACACACACGCACCTAACGCTGCCCCCTTCCACA
ACCTCCGACCCTTCGCCACGTCCGCCGGACTGCCGCTACCCCTCTGCAGT
GCGTGCGCGACCCAGGCACACACCCACACCCGCCCGAGGAGGCGGCCACC
ACAGCCCATGTGGAGAGACTCTGAGACATTGAGAGACGCCGCTCGGACCC
GACCCCCTGGGGGGCCCGGACATCACTCAGGCTTGACGAGTCTCTTCAAG
CCGTCAACGGGACTTGGAGGCGGCCCGGGCCAACACCCCGGGGGCGAGCC
TGAGCCCGAGGGCCAGCGTCCAGAGCACCACGGCCACCGCCGCGGCCGCC
GTGGCCCGGGAAGCAGTCACGGCACGGCCACTGGCATGCCCCGGGCCGGC
GCTGCGGCCGAACCGGGCCTGAGGGCCGGTCCAGGCGGGTTGAACTTCAA
CTTGAAGTTGCGGTCTCGGGCTGCTGCGGGTGGCGTGTCTCGCCGCACGC
TCGGCCAGCCTGAGTTCGACTCTCGGGCTCGCCGGTCAGGGGCTGTGAGC
CCGAGTGCCGGGCAGCACCGCTGGCATGGCCACGGCCGTGGCGGGCGGGC
GGTGGGTTCTGGTTCAGGTGTGTGGAGCCCGGGGAGACCCGGGCGCCGTG
CCTGGTACGGTGGCGATGATCGTTCCGACGCGTCGGAGTCAGACCCCGTC
AAGCCTGAGGCTCTAGAGTACCGAGGCAATGGCGACTCGCTGGGGCCTGT
GTGGCGAGATGGCTCTGGGTCAGACACGGATTGGGGGGTGTTCCCTGCCT
AGTGCTAATTGAGCACCAGTCGGCTCACCGGGCGGTATTGACTACTGGTG
AGGTCTTTAGTGACGTGGCCTGTACCTCTCCCTGTATTGTTCCTGCTAAT
ACTGCACTCGTACTCGTAAGCATATGCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:883669..885097-

>mRNA_S-ischiensis_contig1.141.1 ID=mRNA_S-ischiensis_contig1.141.1|Name=mRNA_S-ischiensis_contig1.141.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1290bp|location=Sequence derived from alignment at S-ischiensis_contig1:883669..885097- (Schizocladia ischiensis KU_0333)
ATGTGGAGAGACTCTGAGACATTGAGAGACGCCGCTCGGACCCGACCCCC
TGGGGGGCCCGGACATCACTCAGGCTTGACGAGTCTCTTCAAGCCGTCAA
CGGGACTTGGAGGCGGCCCGGGCCAACACCCCGGGGGCGAGCCTGAGCCC
GAGGGCCAGCGTCCAGAGCACCACGGCCACCGCCGCGGCCGCCGTGGCCC
GGGAAGCAGTCACGGCACGGCCACTGGCATGCCCCGGGCCGGCGCTGCGG
CCGAACCGGGCCTGAGGGCCGGTCCAGGCGGGTTGAACTTCAACTTGAAG
TTGCGGTCTCGGGCTGCTGCGGGTGGCGTGTCTCGCCGCACGCTCGGCCA
GCCTGAGTTCGACTCTCGGGCTCGCCGGTCAGGGGCTGTGAGCCCGAGTG
CCGGGCAGCACCGCTGGCATGGCCACGGCCGTGGCGGGCGGGCGGTGGGT
TCTGGTTCAGGTGTGTGGAGCCCGGGGAGACCCGGGCGCCGTGCCTGGTA
CGGTGGCGATGATCGTTCCGACGCGTCGGAGTCAGACCCCGTCAAGCCTG
AGGCTCTAGAGTACCGAGGCAATGGCGACTCGCTGGGGCCTGTGTGGCGA
GATGGCTCTGGGTCAGACACGGATTGGGGGGTGTTCCCTGCCTAGATGTG
GAGAGACTCTGAGACATTGAGAGACGCCGCTCGGACCCGACCCCCTGGGG
GGCCCGGACATCACTCAGGCTTGACGAGTCTCTTCAAGCCGTCAACGGGA
CTTGGAGGCGGCCCGGGCCAACACCCCGGGGGCGAGCCTGAGCCCGAGGG
CCAGCGTCCAGAGCACCACGGCCACCGCCGCGGCCGCCGTGGCCCGGGAA
GCAGTCACGGCACGGCCACTGGCATGCCCCGGGCCGGCGCTGCGGCCGAA
CCGGGCCTGAGGGCCGGTCCAGGCGGGTTGAACTTCAACTTGAAGTTGCG
GTCTCGGGCTGCTGCGGGTGGCGTGTCTCGCCGCACGCTCGGCCAGCCTG
AGTTCGACTCTCGGGCTCGCCGGTCAGGGGCTGTGAGCCCGAGTGCCGGG
CAGCACCGCTGGCATGGCCACGGCCGTGGCGGGCGGGCGGTGGGTTCTGG
TTCAGGTGTGTGGAGCCCGGGGAGACCCGGGCGCCGTGCCTGGTACGGTG
GCGATGATCGTTCCGACGCGTCGGAGTCAGACCCCGTCAAGCCTGAGGCT
CTAGAGTACCGAGGCAATGGCGACTCGCTGGGGCCTGTGTGGCGAGATGG
CTCTGGGTCAGACACGGATTGGGGGGTGTTCCCTGCCTAG
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