mRNA_S-ischiensis_contig1.131.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.131.1
Unique NamemRNA_S-ischiensis_contig1.131.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:844479..845643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.131.1prot_S-ischiensis_contig1.131.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 844479..845641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.4421918-CDS-S-ischiensis_contig1:844478..8445711622815388.4421918-CDS-S-ischiensis_contig1:844478..844571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 844479..844571 +
1695739675.1534517-CDS-S-ischiensis_contig1:844478..8445711695739675.1534517-CDS-S-ischiensis_contig1:844478..844571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 844479..844571 +
1622815388.4538858-CDS-S-ischiensis_contig1:844940..8451441622815388.4538858-CDS-S-ischiensis_contig1:844940..845144Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 844941..845144 +
1695739675.161306-CDS-S-ischiensis_contig1:844940..8451441695739675.161306-CDS-S-ischiensis_contig1:844940..845144Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 844941..845144 +
1622815388.4674695-CDS-S-ischiensis_contig1:845554..8456411622815388.4674695-CDS-S-ischiensis_contig1:845554..845641Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 845555..845641 +
1695739675.1703959-CDS-S-ischiensis_contig1:845554..8456411695739675.1703959-CDS-S-ischiensis_contig1:845554..845641Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 845555..845641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.131.1

>prot_S-ischiensis_contig1.131.1 ID=prot_S-ischiensis_contig1.131.1|Name=mRNA_S-ischiensis_contig1.131.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
TIAKNASQASPVAHAMRLGGGASAQSRASRQSNNVYVRVTYRPPVQPGAP
PPHEREVGRTNTEYGCDPEGGGGSGGVVSWNSNANRAACPHNQPCTLHQV
SGATRLETCPPAWSAAATAATPAPPTTD
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mRNA from alignment at S-ischiensis_contig1:844479..845643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.131.1 ID=mRNA_S-ischiensis_contig1.131.1|Name=mRNA_S-ischiensis_contig1.131.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1165bp|location=Sequence derived from alignment at S-ischiensis_contig1:844479..845643+ (Schizocladia ischiensis KU_0333)
ACGATTGCCAAGAACGCCTCCCAGGCTAGTCCTGTGGCGCACGCCATGCG
GCTGGGGGGCGGGGCATCCGCGCAGAGCAGGGCGTCCAGGCAGGTGAGAG
AGCGCACGAGTGTGTTTTCCGAATCATCAGGATTCGTAAACAGATGAAAA
TCATCCTCATAATTTTCCACATGCTGTTGATGTATCAGGAGCAGTGTATT
CTATTGCTAGCTCAGAAACAGGTTTAAAAGTAGGTACGCAGCTGCATTAA
CACCATTAGGAACGCTCGCCTCCGAAGTTCGCCCCTTTCCCTTCGGGTCC
GAAGGGAAAGGGGCGGCCTTTGTTCGGGGTACTCAAACGTTATCAGGCAT
CGCTCTCGACCTGACGCGCCCCCCCCCCTCCCCCTGTTCGCCATGCCACA
TCTCACTCCCATGGCGGCGGCGGCGGCGGCGGCGGCGGCAACGGCGGCGG
CGGCAACGGCAGTCCAACAACGTCTATGTCAGGGTGACCTATCGCCCCCC
CGTGCAGCCGGGTGCACCCCCGCCGCACGAGCGCGAGGTCGGCCGCACCA
ACACCGAGTACGGCTGCGACCCGGAGGGGGGGGGCGGTAGCGGTGGGGTC
GTCTCCTGGAACTCCAACGCCAACCGGGCCGCCTGCCCGCACAACCAGCC
CTGTACGCTGCACCAGGTGGGGCGGGCTCGAGTGATTCTTCAGGGTACCT
AGCTCTGGTTGGATTATATGCCAGCAGTCCAACTTAGCAACTGTCGATTT
CTACATACTTACTTTGAAGTATATACATGCATTGTTTGCTTTGAAGTATA
TAATCGCGTACATGTATACTTTGAAGTGTACACATACGAGTATGTATTTT
CAGGCACATACATGCACACCTTCACGGGTAGGGAGTACGGTGAAATTAGC
CCCAAGTCGCACGTGGGCGTTTTTTTTATTGTTTAGTGCCTACGCAGCTC
TCGCCCGCTCAACCCCCCCCCCTCTGCAGTACAGCGCCGTAGGATATACC
TACTCTACCTCCAATACTGTACTGTACTGGCTGTACATGCGGCACGCACG
CACGCACCCACGCACCCACTCCACAGGTCTCAGGGGCGACGCGTCTGGAG
ACCTGCCCGCCAGCCTGGTCGGCCGCCGCCACCGCCGCCACGCCCGCCCC
TCCCACCACAGATGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:844479..845643+

>mRNA_S-ischiensis_contig1.131.1 ID=mRNA_S-ischiensis_contig1.131.1|Name=mRNA_S-ischiensis_contig1.131.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig1:844479..845643+ (Schizocladia ischiensis KU_0333)
ACGATTGCCAAGAACGCCTCCCAGGCTAGTCCTGTGGCGCACGCCATGCG
GCTGGGGGGCGGGGCATCCGCGCAGAGCAGGGCGTCCAGGCAGACGATTG
CCAAGAACGCCTCCCAGGCTAGTCCTGTGGCGCACGCCATGCGGCTGGGG
GGCGGGGCATCCGCGCAGAGCAGGGCGTCCAGGCAGTCCAACAACGTCTA
TGTCAGGGTGACCTATCGCCCCCCCGTGCAGCCGGGTGCACCCCCGCCGC
ACGAGCGCGAGGTCGGCCGCACCAACACCGAGTACGGCTGCGACCCGGAG
GGGGGGGGCGGTAGCGGTGGGGTCGTCTCCTGGAACTCCAACGCCAACCG
GGCCGCCTGCCCGCACAACCAGCCCTGTACGCTGCACCAGTCCAACAACG
TCTATGTCAGGGTGACCTATCGCCCCCCCGTGCAGCCGGGTGCACCCCCG
CCGCACGAGCGCGAGGTCGGCCGCACCAACACCGAGTACGGCTGCGACCC
GGAGGGGGGGGGCGGTAGCGGTGGGGTCGTCTCCTGGAACTCCAACGCCA
ACCGGGCCGCCTGCCCGCACAACCAGCCCTGTACGCTGCACCAGGTCTCA
GGGGCGACGCGTCTGGAGACCTGCCCGCCAGCCTGGTCGGCCGCCGCCAC
CGCCGCCACGCCCGCCCCTCCCACCACAGATGTCTCAGGGGCGACGCGTC
TGGAGACCTGCCCGCCAGCCTGGTCGGCCGCCGCCACCGCCGCCACGCCC
GCCCCTCCCACCACAGAT
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