mRNA_S-ischiensis_contig1.128.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.128.1
Unique NamemRNA_S-ischiensis_contig1.128.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:840202..840655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.128.1prot_S-ischiensis_contig1.128.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 840226..840655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.4253194-UTR-S-ischiensis_contig1:840201..8402251622815344.4253194-UTR-S-ischiensis_contig1:840201..840225Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 840202..840225 +
1695739648.201161-UTR-S-ischiensis_contig1:840201..8402251695739648.201161-UTR-S-ischiensis_contig1:840201..840225Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 840202..840225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.4351451-CDS-S-ischiensis_contig1:840225..8404101622815344.4351451-CDS-S-ischiensis_contig1:840225..840410Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 840226..840410 +
1695739648.2230737-CDS-S-ischiensis_contig1:840225..8404101695739648.2230737-CDS-S-ischiensis_contig1:840225..840410Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 840226..840410 +
1622815344.4445415-CDS-S-ischiensis_contig1:840555..8406551622815344.4445415-CDS-S-ischiensis_contig1:840555..840655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 840556..840655 +
1695739648.2406201-CDS-S-ischiensis_contig1:840555..8406551695739648.2406201-CDS-S-ischiensis_contig1:840555..840655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 840556..840655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.128.1

>prot_S-ischiensis_contig1.128.1 ID=prot_S-ischiensis_contig1.128.1|Name=mRNA_S-ischiensis_contig1.128.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
MGSNAPAEVHLAFTVTGLKAPTSQARGRGGGASEPTSPDANNRWGGVKGF
LGAVVGDKQDALTITVSPPDTRSEGSPRGPGRSRSPGPEETVDLY
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mRNA from alignment at S-ischiensis_contig1:840202..840655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.128.1 ID=mRNA_S-ischiensis_contig1.128.1|Name=mRNA_S-ischiensis_contig1.128.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=454bp|location=Sequence derived from alignment at S-ischiensis_contig1:840202..840655+ (Schizocladia ischiensis KU_0333)
CCCGAAGGCAAAGGGTGTGCGAGCATGGGGAGCAATGCTCCAGCGGAGGT
GCATTTGGCATTCACAGTCACAGGCCTCAAGGCTCCTACGAGCCAGGCCC
GTGGAAGAGGTGGTGGCGCCAGCGAACCCACTTCCCCGGATGCGAACAAC
CGATGGGGCGGGGTGAAGGGCTTCTTGGGCGCAGTTGTGGGCGACAAGCA
GGATGCCCTGTGAGTGCATTCACGCAATTGGGTTCTCCCTGCACAGGCTC
ACTTCATTCACAGCGCATGAGCTTGTGCGGAAATATAGTTTGCTGCAACG
CTCACACCACGCCCAAACCTCCCGGCGCGATCGGTCGGCCCCCGGCCCGC
GCAGCACGATCACCGTGTCACCGCCCGACACGCGGTCGGAGGGATCCCCC
CGTGGGCCCGGCCGCAGCCGTTCCCCTGGCCCGGAAGAAACTGTTGATCT
CTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:840202..840655+

>mRNA_S-ischiensis_contig1.128.1 ID=mRNA_S-ischiensis_contig1.128.1|Name=mRNA_S-ischiensis_contig1.128.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig1:840202..840655+ (Schizocladia ischiensis KU_0333)
ATGGGGAGCAATGCTCCAGCGGAGGTGCATTTGGCATTCACAGTCACAGG
CCTCAAGGCTCCTACGAGCCAGGCCCGTGGAAGAGGTGGTGGCGCCAGCG
AACCCACTTCCCCGGATGCGAACAACCGATGGGGCGGGGTGAAGGGCTTC
TTGGGCGCAGTTGTGGGCGACAAGCAGGATGCCCTATGGGGAGCAATGCT
CCAGCGGAGGTGCATTTGGCATTCACAGTCACAGGCCTCAAGGCTCCTAC
GAGCCAGGCCCGTGGAAGAGGTGGTGGCGCCAGCGAACCCACTTCCCCGG
ATGCGAACAACCGATGGGGCGGGGTGAAGGGCTTCTTGGGCGCAGTTGTG
GGCGACAAGCAGGATGCCCTCACGATCACCGTGTCACCGCCCGACACGCG
GTCGGAGGGATCCCCCCGTGGGCCCGGCCGCAGCCGTTCCCCTGGCCCGG
AAGAAACTGTTGATCTCTACCACGATCACCGTGTCACCGCCCGACACGCG
GTCGGAGGGATCCCCCCGTGGGCCCGGCCGCAGCCGTTCCCCTGGCCCGG
AAGAAACTGTTGATCTCTAC
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