mRNA_S-ischiensis_contig1.1212.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1212.1
Unique NamemRNA_S-ischiensis_contig1.1212.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A6H5JU68_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU68_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.580e-32
Identity = 78/162 (48.15%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:   61 PPCFPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLV---RGGGRARRQGHSRGCPPPPQXXXXXXLPSGTRPPPLSPPAPLRSPGQWLYVLLHLAVPYLEQRLKGGWAPLGRLRDPF 537
            P    YA+QPD+VLS ERD YYA+ L+GE  SE+ E+++G+ R  +LAPE+R LA CLY GLTNLAGKQTLGQEYC   LV   RGGGR                             PLS     R P Q  Y  L +AVPYL++R++ GW  L  LRDPF
Sbjct:    6 PTLLRYAAQPDVVLSQERDLYYANRLLGEGTSELAETLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGRESS--------------------------PLS-----RRPLQ-AYTFLRVAVPYLQERMREGWHGLRSLRDPF 135
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A836CLL0_9STRA (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.120e-13
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:  106 MERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRGG 312
            MERD YY   L  + + +VLES +G  RT MLA E+ LLA  LY GLT LAG+QT+GQEYCD +  R G
Sbjct:    1 MERDTYYVGALA-DGLKDVLESCMGVRRTSMLAAELNLLAGTLYQGLTVLAGRQTVGQEYCDLMFSRNG 68
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A7S3PCD9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PCD9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.010e-12
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   64 PCFPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNL-AGKQTLGQEYCDSLLVR 306
            P  P A QPDIVL+ ++DAYY  EL  E V++ +ES++G H +  + PEIRL+++  Y GLT+  +G QT G+E+CD L V+
Sbjct:    9 PSLPEAGQPDIVLASQKDAYYRRELF-EKVNKAVESMLGPHISVAIRPEIRLVSELAYFGLTSFRSGGQTPGEEFCDLLQVQ 89
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: R7YV33_CONA1 (RING-type domain-containing protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YV33_CONA1)

HSP 1 Score: 65.9 bits (159), Expect = 2.060e-9
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   70 FPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRG-----GGRARRQGHSRG 345
            +P+A+ PDI+ + ++DAY+A  L   S+S +L S +G+      A + R  A+ LY  LT   G +TLG+EYCD +L+ G      G  RR G+  G
Sbjct:    6 YPFATSPDIIRTHQKDAYFAGTL-STSLSSLLRSALGARFAHAHATDARTAAELLYLALTTGVGNRTLGEEYCDVVLIEGETGRLAGVGRRAGYILG 101
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A2G5BDD8_COERN (RING-type domain-containing protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BDD8_COERN)

HSP 1 Score: 64.7 bits (156), Expect = 3.830e-9
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   70 FPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLV 303
            FP+A QPDIV + ++D +Y   L  + ++E+++   G+ R       I      LYHGLT LAG QTLG+EYC +L +
Sbjct:   36 FPFAGQPDIVRATQKDLFYEQRL-RQQMAELIQERWGTRRYTQHREAIDACCSALYHGLTTLAGSQTLGEEYCGTLQM 112
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A2P6TBC1_CHLSO (Peroxin-2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBC1_CHLSO)

HSP 1 Score: 61.2 bits (147), Expect = 9.600e-8
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   70 FPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRGG-----GRARR 327
            FP AS P+++ + ++D  Y  +L  ++  + +  V+G       A E RLL++ LY  LT  AG+QTLG+EYCD L V G      G ARR
Sbjct:  248 FPAASGPELIRAHQKDELYQQQLT-DACHDAVRRVLGPRAALRWAAETRLLSELLYLSLTTGAGRQTLGEEYCDILQVAGAAGAPPGTARR 337
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: M0ZWN6_SOLTU (Peroxisome biogenesis factor 10 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M0ZWN6_SOLTU)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-7
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:   70 FPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRG 309
            FP A+QP+I+ + E+D  YA   V E+  +    + G+        E +LL   LY+ LT  AGKQTLG+EYCD   V G
Sbjct:   31 FPLAAQPEIMRAAEKDDQYAS-FVYEACRDAFRHLFGTRVAVTYQNEAKLLGQMLYYMLTTGAGKQTLGEEYCDITQVAG 109
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A7S2UVE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVE2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.950e-7
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   64 PCFPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRGGGRARR 327
            P F + S PD +L   +D +Y  + +GE +SE      G    E    E+  L+D +Y+  T  AGKQTLGQEYCD  LV    R R+
Sbjct:    5 PMFEFCSHPDALLLHIKDEFYRKK-IGEMLSEFAIGCSGVGFLERFNEELGFLSDVMYNMFTLAAGKQTLGQEYCDVSLVSPHSRGRK 91
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A5A7R2J2_STRAF (RING/U-box superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R2J2_STRAF)

HSP 1 Score: 59.3 bits (142), Expect = 3.630e-7
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   70 FPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRG 309
            FP A+QP+I+ + E+D  YA   V ++  +    + G+        E++LL   LY+ LT  AGKQTLG+EYCD   V G
Sbjct:   33 FPLAAQPEIMRAAEKDDQYAS-FVHDACRDAFRHLFGTRVAVAYQSEMKLLGQMLYYVLTTGAGKQTLGEEYCDITQVAG 111
[Close]
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Match: A0A1U8DU68_CAPAN (peroxisome biogenesis factor 10 isoform X3 n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8DU68_CAPAN)

HSP 1 Score: 58.9 bits (141), Expect = 4.710e-7
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:   70 FPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEMLAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRG 309
            FP A+QP+I+ + E+D  YA   V E+  +    + G+        E +LL   LY+ LT  AGKQTLG+EYCD   V G
Sbjct:   27 FPLAAQPEIMRAAEKDDQYAS-FVYEACRDAFRHLFGTRVAVAYQNEAKLLGQMLYYMLTTGAGKQTLGEEYCDITQVAG 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JU68_9PHAE2.580e-3248.15RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CLL0_9STRA8.120e-1356.52Peroxisome biogenesis factor 10 n=1 Tax=Tribonema ... [more]
A0A7S3PCD9_9STRA1.010e-1247.56Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
R7YV33_CONA12.060e-938.14RING-type domain-containing protein n=1 Tax=Conios... [more]
A0A2G5BDD8_COERN3.830e-941.03RING-type domain-containing protein (Fragment) n=1... [more]
A0A2P6TBC1_CHLSO9.600e-839.56Peroxin-2 n=1 Tax=Chlorella sorokiniana TaxID=3076... [more]
M0ZWN6_SOLTU2.740e-741.25Peroxisome biogenesis factor 10 n=1 Tax=Solanum tu... [more]
A0A7S2UVE2_9STRA2.950e-739.77Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A5A7R2J2_STRAF3.630e-740.00RING/U-box superfamily protein n=1 Tax=Striga asia... [more]
A0A1U8DU68_CAPAN4.710e-741.25peroxisome biogenesis factor 10 isoform X3 n=2 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8241094..8243521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue4.7e-29
Seed eggNOG ortholog2880.D8LAW2
Preferred namePEX10
KEGG koko:K13346
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000003,GO:0000038,GO:0000209,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009987,GO:0010154,GO:0010381,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0040007,GO:0042579,GO:0042760,GO:0042886,GO:0043094,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048285,GO:0048316,GO:0048468,GO:0048515,GO:0048588,GO:0048589,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061458,GO:0061640,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140013,GO:0140056,GO:0140096,GO:1901564,GO:1901575,GO:1903046,GO:1990351,GO:1990415,GO:1990429
EggNOG free text desc.cAMP binding
EggNOG OGsCOG5574@1,KOG0317@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_006210.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size542
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1212.1prot_S-ischiensis_contig1.1212.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8241142..8243521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.3286107-UTR-S-ischiensis_contig1:8241093..82411411622815491.3286107-UTR-S-ischiensis_contig1:8241093..8241141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8241094..8241141 +
1695739732.3376367-UTR-S-ischiensis_contig1:8241093..82411411695739732.3376367-UTR-S-ischiensis_contig1:8241093..8241141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8241094..8241141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.3405778-CDS-S-ischiensis_contig1:8241141..82413521622815491.3405778-CDS-S-ischiensis_contig1:8241141..8241352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8241142..8241352 +
1695739732.3489292-CDS-S-ischiensis_contig1:8241141..82413521695739732.3489292-CDS-S-ischiensis_contig1:8241141..8241352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8241142..8241352 +
1622815491.3536677-CDS-S-ischiensis_contig1:8243240..82435211622815491.3536677-CDS-S-ischiensis_contig1:8243240..8243521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8243241..8243521 +
1695739732.3606029-CDS-S-ischiensis_contig1:8243240..82435211695739732.3606029-CDS-S-ischiensis_contig1:8243240..8243521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8243241..8243521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1212.1

>prot_S-ischiensis_contig1.1212.1 ID=prot_S-ischiensis_contig1.1212.1|Name=mRNA_S-ischiensis_contig1.1212.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=164bp
MATPPPCFPYASQPDIVLSMERDAYYAHELVGESVSEVLESVIGSHRTEM
LAPEIRLLADCLYHGLTNLAGKQTLGQEYCDSLLVRGGGRARRQGHSRGC
PPPPQDSPPPPLPSGTRPPPLSPPAPLRSPGQWLYVLLHLAVPYLEQRLK
GGWAPLGRLRDPFA
back to top

mRNA from alignment at S-ischiensis_contig1:8241094..8243521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1212.1 ID=mRNA_S-ischiensis_contig1.1212.1|Name=mRNA_S-ischiensis_contig1.1212.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2428bp|location=Sequence derived from alignment at S-ischiensis_contig1:8241094..8243521+ (Schizocladia ischiensis KU_0333)
GTGGCTGTCTCTCGGCACGACAGGCAGGGCGGCTCCACCGCTTGAGTGAT
GGCGACACCGCCGCCGTGCTTCCCCTATGCTTCCCAGCCCGATATCGTTC
TCTCTATGGAAAGAGACGCATACTATGCGCACGAGTTGGTCGGGGAGAGT
GTGTCTGAGGTGTTGGAGAGCGTGATCGGCTCGCATCGGACAGAGATGCT
GGCCCCCGAGATCAGGCTTCTTGCAGACTGCCTCTACCACGGGCTCACGA
ACCTCGCAGGCAAGTCATGATGCCTTATGCTGCTTACATCGTCCACTGTG
GCTTGACCCTGTGCGGCACGGGAAAGGGTTCCCTGTTGTGCACGCCCTCA
CCCCTATCCGCTGCTTTATATGTACTCACGTGGTGCTTGCCGTAGCCCCG
AGACCATTGACCCCGCGCCTCGTTCGAGACGGAGCAGGTTTTGCTTTGCA
AGGAGCATTGCATTTGCGCACACCCCTGCGGGCTGGACGTACGCCAACTA
GTACGCCACGTTCAAGAAATAATACCAGTTTTTCCTGCCGAAACATTTCG
TTGGCACCCCTTTCTGCGGCCGGTTCTGCATACATGAACGAGTTTCCTCG
CGCCAACTTGCGGGCGATCGAGCCACGAGGCCAATCGGCCCCATAAACTT
CCATGCGATGTACCGACCTACGCTAAGGGATCCCTCTCTCGGCCGACATG
CGGGTACAAAAAGCAAGCGAAGCTCTATCCCCCCGGTACAGGGAGGCCTT
GCAATTATGGTACCTCACGTGTACAGTATATGTATTTGGAAGTACGAGTC
TGTGTGCTTGCTCTCGAGTACTTGGAAAGTATGTACCTCGAAGTACCTTC
TAAGTGCAGCAAGTACATCCATTAGCTCCGTTTGAAGAGCTCAGCACCGG
AAAGTCTCCTCAGCTCTTCCCACAGGCGTCGGACGTGACACCCCACAGTA
TCACGAGCTAATCACGTTCAGCACGGGCTGGTTGATTATTTTTCTTTTGC
ATTGTCCTTGTTAGAAGGGTGTGGGTGATTTTTGAGCGTTGAATCCTTCG
CTAGCCGGAGCACCATACGGACGGTGTATAGCGACCCCCCACACTACAGA
TTTTGGGCCGCAAAAATACCGACGGGGGGTAGTTATACAACGGGGGGTCG
TTATTCTCCGTCACCCCCGCGATAACGCACACGACCCACGTTGTCTTTTT
TACATATTTTTTCATTGTTTGTCACCCAGAGGGAGTCGACCTCAGGCCAA
ACACACCTCAGAGAGCTCGTTGGCCACTGTATTAGCAACACTGTCCAAAA
ATAGTGTCCCAAAGCGGTCCTGAAAGTGGCTCTTTGGGGGGGGGGTCCTT
GTACAGTCACCCCGCTGATAAATTTGATGACCCCGAAGAATACAGGGGGG
GGTCCTTATCTACGGGGGACTGATGTACACCTTCGCTTGGCCGGAGTACA
TGGTTGCCGTTGTTCCTCGTTTTCTCGCTGTGCATGGAAGGAAACAAGGC
ATGTTAGTGCTATTGCTCACTTAGTCGcccccccCCCCCGCTCCCCCCGC
TGCCTGCCAGGAGCGAGTGCGTGCTTTCCCAACCTCCCCTGCTGCACTTT
GTCAGAGTACAATACCATAGAAATTGACGTGGGTAATCCCCAATCACAAA
GTTCTTCTGTGCTATAATATGTACTCACGTTGTACTTGCCGTAGTCCCGA
GACCATTGACCACGCGCCTCGATCGAGATGGAGCAGGCCATAAGCTAGAT
TAAATAAACTACTACGAGTACTTCGGAGATAGTTCCAACATAGGGTATGG
TCCGCATGTCTATTGTACTGATCCCAACTCAAACAGCCGGCCACCCTTTC
TCACAGTTCAGAAGGCAGGCCCAAGGGGCGGGGGCGGCGAGAGGAGGGGG
AGAGGAACATACGGGCAGAGCAGCTGGTGGTGGCAGCCTACATATGTTCG
AAGCCAAGCACGAAATGACTACGCCGCACCCTCGGGTGCACAGTTTGGGA
TGGAAACGGTTTTGTGAGATACCCTCACGACCAAACGCCTGCCATCTACT
TGTTAACTTTGAGAAGACCCGTGAGGTTCACCCCCTGCTATCCTGACTGA
CTATATATGCTGGCTCACCTGCTGCAAACACAACCGACCCTACACAGGCA
AGCAGACCCTTGGCCAGGAGTACTGCGACTCACTGCTGGTCCGGGGTGGT
GGGAGAGCCCGAAGGCAGGGACACTCGAGGGGCTGTCCGCCCCCACCACA
AGATTCGCCGCCACCGCCCCTGCCCTCCGGCACCCGTCCGCCTCCCCTCT
CCCCACCGGCGCCGCTACGCTCGCCCGGGCAGTGGCTGTATGTGCTGCTT
CACCTGGCCGTGCCCTACCTGGAACAGCGCCTCAAGGGCGGCTGGGCCCC
CCTGGGTCGCTTGCGTGACCCGTTTGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:8241094..8243521+

>mRNA_S-ischiensis_contig1.1212.1 ID=mRNA_S-ischiensis_contig1.1212.1|Name=mRNA_S-ischiensis_contig1.1212.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=984bp|location=Sequence derived from alignment at S-ischiensis_contig1:8241094..8243521+ (Schizocladia ischiensis KU_0333)
ATGGCGACACCGCCGCCGTGCTTCCCCTATGCTTCCCAGCCCGATATCGT
TCTCTCTATGGAAAGAGACGCATACTATGCGCACGAGTTGGTCGGGGAGA
GTGTGTCTGAGGTGTTGGAGAGCGTGATCGGCTCGCATCGGACAGAGATG
CTGGCCCCCGAGATCAGGCTTCTTGCAGACTGCCTCTACCACGGGCTCAC
GAACCTCGCAGATGGCGACACCGCCGCCGTGCTTCCCCTATGCTTCCCAG
CCCGATATCGTTCTCTCTATGGAAAGAGACGCATACTATGCGCACGAGTT
GGTCGGGGAGAGTGTGTCTGAGGTGTTGGAGAGCGTGATCGGCTCGCATC
GGACAGAGATGCTGGCCCCCGAGATCAGGCTTCTTGCAGACTGCCTCTAC
CACGGGCTCACGAACCTCGCAGGCAAGCAGACCCTTGGCCAGGAGTACTG
CGACTCACTGCTGGTCCGGGGTGGTGGGAGAGCCCGAAGGCAGGGACACT
CGAGGGGCTGTCCGCCCCCACCACAAGATTCGCCGCCACCGCCCCTGCCC
TCCGGCACCCGTCCGCCTCCCCTCTCCCCACCGGCGCCGCTACGCTCGCC
CGGGCAGTGGCTGTATGTGCTGCTTCACCTGGCCGTGCCCTACCTGGAAC
AGCGCCTCAAGGGCGGCTGGGCCCCCCTGGGTCGCTTGCGTGACCCGTTT
GCGGCAAGCAGACCCTTGGCCAGGAGTACTGCGACTCACTGCTGGTCCGG
GGTGGTGGGAGAGCCCGAAGGCAGGGACACTCGAGGGGCTGTCCGCCCCC
ACCACAAGATTCGCCGCCACCGCCCCTGCCCTCCGGCACCCGTCCGCCTC
CCCTCTCCCCACCGGCGCCGCTACGCTCGCCCGGGCAGTGGCTGTATGTG
CTGCTTCACCTGGCCGTGCCCTACCTGGAACAGCGCCTCAAGGGCGGCTG
GGCCCCCCTGGGTCGCTTGCGTGACCCGTTTGCG
back to top