mRNA_S-ischiensis_contig1.1201.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1201.1
Unique NamemRNA_S-ischiensis_contig1.1201.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8119705..8121493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1366
Cds size1356
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1201.1prot_S-ischiensis_contig1.1201.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8119705..8121485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.687906-CDS-S-ischiensis_contig1:8119704..81204421622815361.687906-CDS-S-ischiensis_contig1:8119704..8120442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8119705..8120442 -
1695739660.1890192-CDS-S-ischiensis_contig1:8119704..81204421695739660.1890192-CDS-S-ischiensis_contig1:8119704..8120442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8119705..8120442 -
1622815361.700216-CDS-S-ischiensis_contig1:8120867..81214851622815361.700216-CDS-S-ischiensis_contig1:8120867..8121485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8120868..8121485 -
1695739660.197544-CDS-S-ischiensis_contig1:8120867..81214851695739660.197544-CDS-S-ischiensis_contig1:8120867..8121485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8120868..8121485 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.7121656-UTR-S-ischiensis_contig1:8121485..81214931622815361.7121656-UTR-S-ischiensis_contig1:8121485..8121493Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8121486..8121493 -
1695739660.2062898-UTR-S-ischiensis_contig1:8121485..81214931695739660.2062898-UTR-S-ischiensis_contig1:8121485..8121493Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8121486..8121493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1201.1

>prot_S-ischiensis_contig1.1201.1 ID=prot_S-ischiensis_contig1.1201.1|Name=mRNA_S-ischiensis_contig1.1201.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=452bp
MVRLILFVLSNRHIYRRELETEEVSVRGIAAQLDMLRVLDTVKLPVVLSP
SGMWKGALTDAPVPFPGSTREVQAIVLDRAGLGAGEEFSLGAALIHMQLT
CLTAPPGSSTRCELAGDYVSLMIGKGISSADRDEDGCTWTERSLAHTALA
CGDVDRLLLALGRLEGELPRRPERTNQFDDPEEMRRRELRESERAGRRRS
KDQAPTEGQELPLWAPAYGPGTFDDDFDALSDEDEDFDDLIIPTQHIQPT
EPPGGAPVVTAPAPPGQPTTDLDGGSTAHDPAIALSPTPLKLPGAGGAGA
GAAAAAAAPAGPAAAAAAAPGTAAPTPPIGPGNCDKDCGGCHVEEGSTEI
AAAAAPTAAKAAAPVAVTPAAATAATTASATATAEPGAGPHGAVAAGVGP
ALDTHGEASPPGVGGVQVQTGAIERGGHRAASILQMIVMAIKLVRAPTNK
EG
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mRNA from alignment at S-ischiensis_contig1:8119705..8121493-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1201.1 ID=mRNA_S-ischiensis_contig1.1201.1|Name=mRNA_S-ischiensis_contig1.1201.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1789bp|location=Sequence derived from alignment at S-ischiensis_contig1:8119705..8121493- (Schizocladia ischiensis KU_0333)
GGGGCATCATGGTGCGTCTTATTTTGTTCGTGTTAAGCAACCGTCACATA
TACCGTCGCGAGTTGGAGACGGAGGAGGTCTCCGTCCGGGGAATCGCAGC
CCAGCTCGATATGCTGCGTGTACTGGACACCGTGAAACTTCCCGTCGTGC
TCTCACCCTCGGGGATGTGGAAGGGTGCCTTGACCGATGCCCCTGTCCCC
TTCCCGGGCAGCACTCGAGAAGTCCAGGCCATTGTGTTGGACCGTGCGGG
CCTGGGTGCGGGAGAGGAGTTCAGCCTGGGTGCGGCACTCATTCACATGC
AGCTCACGTGCCTTACGGCTCCTCCTGGCTCCAGCACCCGGTGCGAGCTC
GCTGGCGACTATGTGAGCCTGATGATCGGGAAGGGCATCAGCTCAGCCGA
CCGAGATGAAGATGGATGCACATGGACCGAGCGCTCCCTGGCGCACACGG
CTCTGGCATGCGGCGACGTTGACCGCTTGCTTCTGGCCCTTGGGCGGCTT
GAGGGCGAGCTTCCCCGCCGGCCCGAGCGAACGAACCAGTTCGATGACCC
GGAGGAAATGCGCCGACGCGAGCTCCGCGAGTCCGAGAGGGCAGGCAGGC
GAAGAAGCAAGGACCAGGCGCCCACGGTGGGTTCCCCATATCACCGCAAC
ACATGCACGCGCATGCCCACGCACACGCACAGACATGCGTGTAGTGAAGC
TGTTCTGATGCCATCTGTCCGCTTCCCCCCTGCAGGAGCACAAGGCCGCT
AGCGACTTCACATGTGCTGTGCACTTCTGAGTTCCGGCCGGTACCCGCAG
GGGCAGCAGTTGCTGCTACATTGTACGCCGCCGACATGCCACCCGACGCA
CCCCCGACCAGTGCAGAATCTCGGCGCGGGGCCCTTAGATATCATACGCG
GTGCATTACCGTTGCCCCCCCCGCCCCGCTGTCACCGGCATGGCGGCCAG
GCCTGCCGCCGACGCGCTGCCGGTGCCACACCACGGTGACCTCAAAACTG
CCAACATTTGTGCGTAACCCCCCCCTCCCCACCCCGGCTGCTGCGGCACA
GGAAGGGCAAGAGCTGCCACTGTGGGCCCCCGCGTACGGGCCGGGGACGT
TTGACGACGACTTTGATGCATTGAGCGACGAAGACGAGGACTTTGACGAC
TTGATCATCCCCACACAACACATACAGCCCACGGAACCGCCAGGGGGCGC
GCCTGTTGTCACCGCTCCAGCACCGCCCGGGCAGCCTACCACTGACCTGG
ACGGAGGTAGCACGGCACACGACCCTGCAATCGCCCTGTCGCCGACCCCG
CTGAAGCTGCCTGGTGCTGGTGGTGCTGGTGCTGGTGCTGCTGCTGCTGC
TGCTGCTCCTGCCGGACCTGCTGCCGCCGCCGCAGCAGCACCAGGCACTG
CAGCCCCCACGCCGCCAATAGGCCCAGGAAATTGCGACAAGGATTGTGGC
GGCTGCCATGTGGAGGAGGGTAGCACGGAGATTGCCGCCGCGGCAGCCCC
CACGGCGGCCAAAGCTGCTGCCCCTGTGGCGGTCACGCCTGCTGCTGCCA
CTGCCGCAACAACCGCCTCCGCCACTGCCACAGCTGAGCCCGGTGCCGGT
CCTCATGGTGCCGTTGCGGCCGGAGTTGGGCCCGCACTTGATACCCATGG
CGAAGCAAGCCCCCCCGGTGTCGGGGGGGTGCAGGTGCAGACGGGTGCCA
TCGAGCGCGGCGGGCACCGAGCTGCGTCCATATTGCAAATGATCGTGATG
GCCATTAAGCTTGTCCGAGCTCCGACAAACAAGGAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8119705..8121493-

>mRNA_S-ischiensis_contig1.1201.1 ID=mRNA_S-ischiensis_contig1.1201.1|Name=mRNA_S-ischiensis_contig1.1201.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2712bp|location=Sequence derived from alignment at S-ischiensis_contig1:8119705..8121493- (Schizocladia ischiensis KU_0333)
ATGGTGCGTCTTATTTTGTTCGTGTTAAGCAACCGTCACATATACCGTCG
CGAGTTGGAGACGGAGGAGGTCTCCGTCCGGGGAATCGCAGCCCAGCTCG
ATATGCTGCGTGTACTGGACACCGTGAAACTTCCCGTCGTGCTCTCACCC
TCGGGGATGTGGAAGGGTGCCTTGACCGATGCCCCTGTCCCCTTCCCGGG
CAGCACTCGAGAAGTCCAGGCCATTGTGTTGGACCGTGCGGGCCTGGGTG
CGGGAGAGGAGTTCAGCCTGGGTGCGGCACTCATTCACATGCAGCTCACG
TGCCTTACGGCTCCTCCTGGCTCCAGCACCCGGTGCGAGCTCGCTGGCGA
CTATGTGAGCCTGATGATCGGGAAGGGCATCAGCTCAGCCGACCGAGATG
AAGATGGATGCACATGGACCGAGCGCTCCCTGGCGCACACGGCTCTGGCA
TGCGGCGACGTTGACCGCTTGCTTCTGGCCCTTGGGCGGCTTGAGGGCGA
GCTTCCCCGCCGGCCCGAGCGAACGAACCAGTTCGATGACCCGGAGGAAA
TGCGCCGACGCGAGCTCCGCGAGTCCGAGAGGGCAGGCAGGCGAAGAAGC
AAGGACCAGGCGCCCACGATGGTGCGTCTTATTTTGTTCGTGTTAAGCAA
CCGTCACATATACCGTCGCGAGTTGGAGACGGAGGAGGTCTCCGTCCGGG
GAATCGCAGCCCAGCTCGATATGCTGCGTGTACTGGACACCGTGAAACTT
CCCGTCGTGCTCTCACCCTCGGGGATGTGGAAGGGTGCCTTGACCGATGC
CCCTGTCCCCTTCCCGGGCAGCACTCGAGAAGTCCAGGCCATTGTGTTGG
ACCGTGCGGGCCTGGGTGCGGGAGAGGAGTTCAGCCTGGGTGCGGCACTC
ATTCACATGCAGCTCACGTGCCTTACGGCTCCTCCTGGCTCCAGCACCCG
GTGCGAGCTCGCTGGCGACTATGTGAGCCTGATGATCGGGAAGGGCATCA
GCTCAGCCGACCGAGATGAAGATGGATGCACATGGACCGAGCGCTCCCTG
GCGCACACGGCTCTGGCATGCGGCGACGTTGACCGCTTGCTTCTGGCCCT
TGGGCGGCTTGAGGGCGAGCTTCCCCGCCGGCCCGAGCGAACGAACCAGT
TCGATGACCCGGAGGAAATGCGCCGACGCGAGCTCCGCGAGTCCGAGAGG
GCAGGCAGGCGAAGAAGCAAGGACCAGGCGCCCACGGAAGGGCAAGAGCT
GCCACTGTGGGCCCCCGCGTACGGGCCGGGGACGTTTGACGACGACTTTG
ATGCATTGAGCGACGAAGACGAGGACTTTGACGACTTGATCATCCCCACA
CAACACATACAGCCCACGGAACCGCCAGGGGGCGCGCCTGTTGTCACCGC
TCCAGCACCGCCCGGGCAGCCTACCACTGACCTGGACGGAGGTAGCACGG
CACACGACCCTGCAATCGCCCTGTCGCCGACCCCGCTGAAGCTGCCTGGT
GCTGGTGGTGCTGGTGCTGGTGCTGCTGCTGCTGCTGCTGCTCCTGCCGG
ACCTGCTGCCGCCGCCGCAGCAGCACCAGGCACTGCAGCCCCCACGCCGC
CAATAGGCCCAGGAAATTGCGACAAGGATTGTGGCGGCTGCCATGTGGAG
GAGGGTAGCACGGAGATTGCCGCCGCGGCAGCCCCCACGGCGGCCAAAGC
TGCTGCCCCTGTGGCGGTCACGCCTGCTGCTGCCACTGCCGCAACAACCG
CCTCCGCCACTGCCACAGCTGAGCCCGGTGCCGGTCCTCATGGTGCCGTT
GCGGCCGGAGTTGGGCCCGCACTTGATACCCATGGCGAAGCAAGCCCCCC
CGGTGTCGGGGGGGTGCAGGTGCAGACGGGTGCCATCGAGCGCGGCGGGC
ACCGAGCTGCGTCCATATTGCAAATGATCGTGATGGCCATTAAGCTTGTC
CGAGCTCCGACAAACAAGGAGGGGGAAGGGCAAGAGCTGCCACTGTGGGC
CCCCGCGTACGGGCCGGGGACGTTTGACGACGACTTTGATGCATTGAGCG
ACGAAGACGAGGACTTTGACGACTTGATCATCCCCACACAACACATACAG
CCCACGGAACCGCCAGGGGGCGCGCCTGTTGTCACCGCTCCAGCACCGCC
CGGGCAGCCTACCACTGACCTGGACGGAGGTAGCACGGCACACGACCCTG
CAATCGCCCTGTCGCCGACCCCGCTGAAGCTGCCTGGTGCTGGTGGTGCT
GGTGCTGGTGCTGCTGCTGCTGCTGCTGCTCCTGCCGGACCTGCTGCCGC
CGCCGCAGCAGCACCAGGCACTGCAGCCCCCACGCCGCCAATAGGCCCAG
GAAATTGCGACAAGGATTGTGGCGGCTGCCATGTGGAGGAGGGTAGCACG
GAGATTGCCGCCGCGGCAGCCCCCACGGCGGCCAAAGCTGCTGCCCCTGT
GGCGGTCACGCCTGCTGCTGCCACTGCCGCAACAACCGCCTCCGCCACTG
CCACAGCTGAGCCCGGTGCCGGTCCTCATGGTGCCGTTGCGGCCGGAGTT
GGGCCCGCACTTGATACCCATGGCGAAGCAAGCCCCCCCGGTGTCGGGGG
GGTGCAGGTGCAGACGGGTGCCATCGAGCGCGGCGGGCACCGAGCTGCGT
CCATATTGCAAATGATCGTGATGGCCATTAAGCTTGTCCGAGCTCCGACA
AACAAGGAGGGG
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