mRNA_S-ischiensis_contig1.1200.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1200.1
Unique NamemRNA_S-ischiensis_contig1.1200.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1200.1 vs. uniprot
Match: D8LTA3_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA3_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 4.280e-6
Identity = 44/112 (39.29%), Postives = 52/112 (46.43%), Query Frame = -1 
Query:  146 LGSSCLLGVCRAYLLGVEWRFVSTRFLVYSSLLPLVAELACP-------------------------DQHPDLRPLLR---ECSPPMSKLLADLCAACEDLVACQPPAPCPP 397
            L  SCL  VCR YL G +WRFVST    Y +LL L+ E+  P                          + P  + LLR   +C P M  LL  LC A +DLVAC PP P PP
Sbjct:  527 LDGSCLRSVCRQYLFGADWRFVSTHQQFYLALLRLLQEVLRPFNGPGAGGDGGGCRRQAAGGAGEPRSRQPLAQSLLRPSVDC-PGMVDLLDSLCVALDDLVAC-PPQPPPP 636
[Close]
BLAST of mRNA_S-ischiensis_contig1.1200.1 vs. uniprot
Match: A0A6H5JLB4_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.500e-5
Identity = 47/118 (39.83%), Postives = 53/118 (44.92%), Query Frame = -1 
Query:  131 LGSSCLLGVCRAYLLGVEWRFVSTRFLVYSSLLPLVAELACP--DQHP------DLR--------------PLLR-------ECSPPMSKLLADLCAACEDLVACQPPAPCPPTPATT 397
            L  SCL  VCR YL G +WRFVST    Y +LL L+ E+  P  D  P      D R              PL R       +C P M  LL  LC A +DLVAC P  P P   A T
Sbjct:  593 LDGSCLRSVCRQYLFGADWRFVSTHQQFYLALLRLLREVLRPFNDARPGGDGGGDCRGQAAGGAGEPRSPQPLARSLLHPSADC-PGMVDLLDSLCVALDDLVACPPQPPQPAALAPT 709
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTA3_ECTSI4.280e-639.29UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JLB4_9PHAE1.500e-539.83UBC core domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8119152..8119590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size439
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1200.1prot_S-ischiensis_contig1.1200.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8119178..8119513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.2518253-UTR-S-ischiensis_contig1:8119151..81191771622815378.2518253-UTR-S-ischiensis_contig1:8119151..8119177Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8119152..8119177 +
1695739666.0110722-UTR-S-ischiensis_contig1:8119151..81191771695739666.0110722-UTR-S-ischiensis_contig1:8119151..8119177Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8119152..8119177 +
1622815378.2761495-UTR-S-ischiensis_contig1:8119513..81195901622815378.2761495-UTR-S-ischiensis_contig1:8119513..8119590Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8119514..8119590 +
1695739666.0321274-UTR-S-ischiensis_contig1:8119513..81195901695739666.0321274-UTR-S-ischiensis_contig1:8119513..8119590Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8119514..8119590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.2632637-CDS-S-ischiensis_contig1:8119177..81195131622815378.2632637-CDS-S-ischiensis_contig1:8119177..8119513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8119178..8119513 +
1695739666.023787-CDS-S-ischiensis_contig1:8119177..81195131695739666.023787-CDS-S-ischiensis_contig1:8119177..8119513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8119178..8119513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1200.1

>prot_S-ischiensis_contig1.1200.1 ID=prot_S-ischiensis_contig1.1200.1|Name=mRNA_S-ischiensis_contig1.1200.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
MVAAAAAAGAAVVVAAAAVPAAPRVDVAPAAALTVVVAGVGGQGAGGWQA
TRSSQAAHRSARSFDIGGLHSRSRGRRSGCWSGQASSATRGSRELYTRKR
VETKRHSTPRR*
back to top

mRNA from alignment at S-ischiensis_contig1:8119152..8119590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1200.1 ID=mRNA_S-ischiensis_contig1.1200.1|Name=mRNA_S-ischiensis_contig1.1200.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=439bp|location=Sequence derived from alignment at S-ischiensis_contig1:8119152..8119590+ (Schizocladia ischiensis KU_0333)
CCTCGCTTGTGCCAGCGGCAGGGGCGATGGTGGCGGCGGCGGCAGCGGCA
GGGGCGGCGGTGGTGGTGGCGGCGGCGGCGGTGCCGGCGGCGCCCAGGGT
TGATGTCGCTCCCGCCGCCGCCCTCACCGTCGTCGTCGCCGGCGTAGGGG
GGCAAGGCGCCGGGGGCTGGCAGGCCACGAGATCCTCGCAGGCAGCGCAC
AGGTCCGCCAGGAGTTTCGACATTGGGGGGCTGCACTCCCGCAGCAGGGG
GCGCAGGTCCGGGTGCTGGTCCGGGCAGGCCAGCTCCGCCACCAGGGGCA
GCAGGGAGCTGTACACGAGGAAGCGGGTGGAGACAAAGCGCCACTCCACC
CCCAGGAGGTAGGCACGGCACACACCCAGCAGGCAGGAGCTCCCCAGCAC
CTCAGACAGGAGGCTCTCCCCCCGCCGCGGGCCCCTGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:8119152..8119590+

>mRNA_S-ischiensis_contig1.1200.1 ID=mRNA_S-ischiensis_contig1.1200.1|Name=mRNA_S-ischiensis_contig1.1200.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig1:8119152..8119590+ (Schizocladia ischiensis KU_0333)
ATGGTGGCGGCGGCGGCAGCGGCAGGGGCGGCGGTGGTGGTGGCGGCGGC
GGCGGTGCCGGCGGCGCCCAGGGTTGATGTCGCTCCCGCCGCCGCCCTCA
CCGTCGTCGTCGCCGGCGTAGGGGGGCAAGGCGCCGGGGGCTGGCAGGCC
ACGAGATCCTCGCAGGCAGCGCACAGGTCCGCCAGGAGTTTCGACATTGG
GGGGCTGCACTCCCGCAGCAGGGGGCGCAGGTCCGGGTGCTGGTCCGGGC
AGGCCAGCTCCGCCACCAGGGGCAGCAGGGAGCTGTACACGAGGAAGCGG
GTGGAGACAAAGCGCCACTCCACCCCCAGGAGGTAGATGGTGGCGGCGGC
GGCAGCGGCAGGGGCGGCGGTGGTGGTGGCGGCGGCGGCGGTGCCGGCGG
CGCCCAGGGTTGATGTCGCTCCCGCCGCCGCCCTCACCGTCGTCGTCGCC
GGCGTAGGGGGGCAAGGCGCCGGGGGCTGGCAGGCCACGAGATCCTCGCA
GGCAGCGCACAGGTCCGCCAGGAGTTTCGACATTGGGGGGCTGCACTCCC
GCAGCAGGGGGCGCAGGTCCGGGTGCTGGTCCGGGCAGGCCAGCTCCGCC
ACCAGGGGCAGCAGGGAGCTGTACACGAGGAAGCGGGTGGAGACAAAGCG
CCACTCCACCCCCAGGAGGTAG
back to top