mRNA_S-ischiensis_contig1.1194.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1194.1
Unique NamemRNA_S-ischiensis_contig1.1194.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: A0A6H5JH92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH92_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.060e-62
Identity = 132/299 (44.15%), Postives = 176/299 (58.86%), Query Frame = 3 
Query:   45 MANIVGGMAMIASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLKTV-SGAKAGVEARSFAVAGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARYGVADNNVP-----VVTPGTDGKRFA---GEASPGGATSTTHDDGSPG-----GSQGRS-PDHEQAPQGATPRAGGPGDDLRRPLVTGT 896
            MA IVG +A IAS++LN+SPA+DV+DI++T+ V ERSILPY    VDG+NWVVY SL    FP+  TN  G + G++++ VYL+      +  V   ++ +  GA   +  +   A + + + S   A D++GY  D FN+ LY SPLEL WKV+R RST+GMYLPLSIT+  A ALWATYG L  D FV  PQ +G  AGL QLSLF R+G+ADNN P     +   G  G R +   G+ +  G  +     G  G     GS+ R+ P       G+    G  G  LR PL+TGT
Sbjct:    1 MAGIVGTLASIASILLNVSPARDVWDINKTRSVTERSILPYCMMMVDGANWVVYASLIDDVFPIGFTNAFGFVAGSTYSAVYLRNCWHDKRERVRRDAWRIFAGAVSIIGLMATSAVVMAVVWSSTTAADSIGYFVDVFNVCLYASPLELAWKVLRTRSTSGMYLPLSITIAAAAALWATYGYLTSDWFVAAPQSVGFLAGLAQLSLFLRFGIADNNQPSEGQALEPDGQSGNRSSPGPGDGADAGVPAAAAGSGERGSRLSDGSEVRNAPPTSVGSPGSEGGRGRGGGQLREPLITGT 299
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BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: D8LS37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS37_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.630e-30
Identity = 78/173 (45.09%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  411 SQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARYGVADNNVPVVTPGTDGKRFAGE-ASPGGATSTTHDDGSPGGSQGRSPDHEQAPQGATPRAGGPGDD----------LRRPLVTGT 896
            S   A D++GY  D FN+ LY SPLEL WKV+R RST+GMYLPLSIT+  A ALWATYG L  D FV  PQ +G  AGL QLSLF R+G+ADNN P      +    +G+ +SP G             + G  P    +     P +G PG +          LR PL+TGT
Sbjct:   13 SSTTAADSIGYFVDLFNVCLYASPLELAWKVLRTRSTSGMYLPLSITIAAAAALWATYGYLTSDWFVAAPQSVGFLAGLAQLSLFLRFGIADNNQPSEGQALEPDGQSGDRSSPPGXXXXXXXXXXXXXAGGGEPGRRLSDGSEPPTSGSPGGEGXXVXXXXGQLREPLITGT 185
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BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: G4YRI8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YRI8_PHYSP)

HSP 1 Score: 109 bits (273), Expect = 1.290e-23
Identity = 69/215 (32.09%), Postives = 113/215 (52.56%), Query Frame = 3 
Query:   45 MANIVGGMAM---IASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLK--TVSGAKAGVEARSFAVAGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARY 674
            MA ++G + +   +A+L++ +SP  D Y IH+T   GE SILP    F +   W +YG  A+  FPV+V N+ G+     ++ +Y +  T   A   + AR+  V     L+++ LG   G T   Q+ +    T G++A   NI LY SP     KVI  +  + + + +S+      ALW  Y + VGD+FV +P +LG+     Q++L+ +Y
Sbjct:    1 MAAVLGALRVLTTVAALMVGISPLPDFYRIHKTHTTGEVSILPITLLFCNSFMWAIYGGSANNIFPVLVCNMYGMATSVVFSSIYYRWSTDRAAIHKIWARAACVLAAGTLYLI-LGS-CGATG--QTFDQVASTFGFIAVAINIALYASPFANMKKVIETKDASSLPITISVVFLGNAALWVLYSITVGDMFVMVPNLLGMLLCTAQVALYIKY 211
[Close]
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: W2IE58_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2IE58_PHYPR)

HSP 1 Score: 108 bits (271), Expect = 2.440e-23
Identity = 72/216 (33.33%), Postives = 114/216 (52.78%), Query Frame = 3 
Query:   45 MANIVGGMAM---IASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLK--TVSGAKAGVEARSFAV-AGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARY 674
            MA I+G + +   +A+L + LSP  D Y IH+TK  GE SILP    F +   W +Y    +  FPV+V NL G+     ++ +Y +  T   +   + +R+  V A G F  V+     +G+TS  Q+ +    + G++A + NI LY SPL    KVI  +  + + + +S       ALW  Y L VGD+FV +P +LG+     Q++L+ +Y
Sbjct:    1 MAAILGMLRVLTTVAALFVGLSPLPDFYRIHKTKTTGEVSILPITLLFCNSFMWAIYACWTNNIFPVLVCNLYGMTTSVVFSSIYYRWSTDRASIHKIWSRAACVLAAGTFYLVLGS---SGVTS--QTHDQVASSFGFIAVSINIALYASPLAGMKKVIETKDASSLPITISAVFLGNAALWVIYALTVGDMFVMVPNLLGMILCAAQVALYIKY 211
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BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: H3GDC3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GDC3_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 4.600e-23
Identity = 68/216 (31.48%), Postives = 116/216 (53.70%), Query Frame = 3 
Query:   45 MANIVGGMAM---IASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLKTVSGAKAGVEA---RSFAVAGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARY 674
            MA I+G + +   +A+L++ +SP  D + IH+T   GE SILP    F +   W +YG   +  FPV++ N+ G+     ++ +Y +  S  +  +     R+  V     L+++ LG Y G T+  Q+ +    T G++A T NI LY SPL    KVI+ +  + + + +S+      ALW  Y + VGD+FV +P +LG+     Q++L+ +Y
Sbjct:    1 MAAILGALRVLTTVAALMVGISPLPDFWRIHKTHSTGEVSILPITLLFCNSFMWAIYGYSTNNIFPVLICNMYGMATSIVFSSIYYRW-SADRPSIHTLWTRAACVLAAGTLYLI-LGSY-GATN--QTHDQVASTFGFIAVTINIALYASPLAGMKKVIQTKDASSLPIAISVVFLGNAALWVIYAITVGDVFVMVPNLLGMLLCSAQVALYIKY 211
[Close]
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: D0N2J4_PHYIT (MtN3-like protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0N2J4_PHYIT)

HSP 1 Score: 108 bits (269), Expect = 4.600e-23
Identity = 69/219 (31.51%), Postives = 114/219 (52.05%), Query Frame = 3 
Query:   45 MANIVGGMAM---IASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLKTVSGAKAGVEA----RSFAVAGGAFLFVM--CLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARY 674
            MA I+G + +   +A+L++ LSP  D Y IH+T+  GE SILP    F +   W +YG   +  FPVV  N+ G+     ++ +Y +  S  +A V       ++ +A G F  ++  C     G+T+  Q+ +    + G++A   NI LY SPL    KVI  +  + + + +S+      ALW  Y L  GD+FV +P +LG+     Q++L+ +Y
Sbjct:    1 MAAILGMLRVLTTVAALLVGLSPLPDFYRIHKTQTTGEVSILPITLLFCNCVMWAIYGCWTNNIFPVVACNVYGMTTSIVFSSIYYRW-SADRASVHKIWSHAAYVLAAGTFYLILGSC-----GVTN--QTHDQVASSFGFIAVAINIALYASPLAGMKKVIETKDASSLPITISVVFLGNAALWVVYALAAGDVFVMVPNMLGMILCAAQVALYVKY 211
[Close]
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: A0A0P1AIJ6_PLAHL (3-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIJ6_PLAHL)

HSP 1 Score: 107 bits (268), Expect = 6.060e-23
Identity = 69/222 (31.08%), Postives = 112/222 (50.45%), Query Frame = 3 
Query:   51 NIVGGMAMIASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLKTVSGAKAGVEARSFA---VAGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARYGVADNNVPVVT 707
            +I+  +  IA+L + LSP  D Y I++T   GE SILP    F +   W +YG      FPV V NL G+     ++ ++ +  +   + ++  S A   +A G F  ++      G+T+  Q+++    T G+VA   NI LY SPL    KVI  +  + + + +SI      ALW  Y ++ GD+FV +P +LG+     Q++L+ RY +  N     T
Sbjct:    6 SILRALTTIAALFVGLSPLPDYYRIYQTHTTGEVSILPITLLFCNSFMWTIYGFWTHNIFPVFVCNLYGMTTSIVFSSIFYRWSTDRASVLKIWSCAACILAIGTFYLILGSN---GVTN--QNRDQVASTFGFVAVAINIALYASPLASMKKVIETKDASSLPITISIVFLGNAALWVLYAIIAGDMFVMVPNLLGMLLCTAQVALYLRYRLKTNETAHAT 222
[Close]
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: A0A225V3T4_9STRA (MtN3-like protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V3T4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.200e-22
Identity = 71/217 (32.72%), Postives = 108/217 (49.77%), Query Frame = 3 
Query:   45 MANIVGGMAM---IASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLK----TVSGAKAGVEARSFAVAGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARY 674
            MA I+G + +   +A+L + LSP  D Y IH+T+  GE SILP    F +   W +Y    +  FPV+V NL G+     +  +Y +      S  K    A     AG    F + LG  +G T+  Q+ +    T G++A T NI LY SPL    KVI+ +  + + + +S       ALW  Y +  GD+FV +P +LG+     Q+ L+ +Y
Sbjct:    1 MAAILGVLRVLTTVAALFVGLSPLPDFYRIHKTQTTGEVSILPITLLFCNSFMWAIYACWTNNIFPVLVCNLYGMTTSVVFTAIYYRWSTDRASIHKIWTRAGCVLAAGA---FYLMLG-NSGATN--QTHDQVASTFGFIAVTINIALYASPLAGMKKVIQTKDASSLPITISAVFLGNAALWVIYAITAGDMFVMVPNLLGMLLCAAQVGLYIKY 211
[Close]
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: D8LFA7_ECTSI (MtN3-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.460e-22
Identity = 66/213 (30.99%), Postives = 106/213 (49.77%), Query Frame = 3 
Query:   45 MANIVGGMAMIASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLKTVSGAKAGVEARSFAVAGGAFLFV-----MCLGLYAGLTSSLQSQELARDT-----------VGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGV 635
            M N +   A+ ++ +L ++P  +  ++ R+K VGERS+ P+V  +   + W++YG       P VVTNL GL C   +  VY   V    A  ++ ++ +    FL +      CLG ++    S  S + A  T           +G  A     + Y +PL    KVIR RST GM L L++   V   LW +YG+++ + F+++P VLGV
Sbjct:    1 MENALKLSALGSASLLFVAPIHEFEEVRRSKHVGERSVFPFVCMWASSTLWLIYGLFIGDIVPTVVTNLLGLACSCYYCAVYAWAVE--PASRKSSTYNLFAATFLGICVVVTFCLGTFSPRPESWVSMQDADSTDSGGDERAQRFLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMSYGVMLVNAFIYVPNVLGV 211
[Close]
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Match: A0A662WYN5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYN5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.660e-21
Identity = 69/208 (33.17%), Postives = 104/208 (50.00%), Query Frame = 3 
Query:   51 NIVGGMAMIASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSNWVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLKTVSGAKAGVEARSFAVAGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELTWKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAGLLQLSLFARY 674
            +I+   A I+++ L LSP  D   IHR +  GE  ILP +    +   W VYG L+  +FPV+  N+ G L   ++  V+ +     +A +       A G  L +M + L       + S  L +  VGYVA   NI LY SPL+    V+R +S   + L + +   V  ALW +Y LL  D+FV +P  LGV    +Q++L  +Y
Sbjct:   13 SIINIAATISAVALCLSPYPDFRRIHRQQNTGEVRILPVLMLCCNCFAWAVYGYLSESYFPVLSINVFGTLSALTFTSVFYRWTKD-RAALNKMGVYSAAGVLLAMMFVALARSAVIPVSSSVL-KAIVGYVAIAVNICLYASPLQTMKIVLRTKSAASLPLTMCVVNLVNGALWVSYALLSNDMFVLVPNALGVVLTAVQVALCIKY 218
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH92_9PHAE2.060e-6244.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS37_ECTSI1.630e-3045.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4YRI8_PHYSP1.290e-2332.09Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2IE58_PHYPR2.440e-2333.33Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
H3GDC3_PHYRM4.600e-2331.48Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0N2J4_PHYIT4.600e-2331.51MtN3-like protein n=3 Tax=Phytophthora infestans T... [more]
A0A0P1AIJ6_PLAHL6.060e-2331.083-like protein n=1 Tax=Plasmopara halstedii TaxID=... [more]
A0A225V3T4_9STRA2.200e-2232.72MtN3-like protein n=1 Tax=Phytophthora megakarya T... [more]
D8LFA7_ECTSI2.460e-2230.99MtN3-like protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A662WYN5_9STRA1.660e-2133.17Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8070207..8077766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue1e-26
Seed eggNOG ortholog2880.D8LS37
KEGG koko:K15382
KEGG TC9.A.58.1
EggNOG free text desc.sugar transmembrane transporter activity
EggNOG OGsKOG1623@1,KOG1623@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004940.1
Exons6
Model size1399
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1194.1prot_S-ischiensis_contig1.1194.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8070251..8077275 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.715144-UTR-S-ischiensis_contig1:8070206..80702501622815489.715144-UTR-S-ischiensis_contig1:8070206..8070250Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8070207..8070250 +
1695739731.343626-UTR-S-ischiensis_contig1:8070206..80702501695739731.343626-UTR-S-ischiensis_contig1:8070206..8070250Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8070207..8070250 +
1622815489.7972338-UTR-S-ischiensis_contig1:8077275..80777661622815489.7972338-UTR-S-ischiensis_contig1:8077275..8077766Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8077276..8077766 +
1695739731.4093843-UTR-S-ischiensis_contig1:8077275..80777661695739731.4093843-UTR-S-ischiensis_contig1:8077275..8077766Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8077276..8077766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.7307298-CDS-S-ischiensis_contig1:8070250..80703261622815489.7307298-CDS-S-ischiensis_contig1:8070250..8070326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8070251..8070326 +
1695739731.3581035-CDS-S-ischiensis_contig1:8070250..80703261695739731.3581035-CDS-S-ischiensis_contig1:8070250..8070326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8070251..8070326 +
1622815489.7424088-CDS-S-ischiensis_contig1:8070426..80705021622815489.7424088-CDS-S-ischiensis_contig1:8070426..8070502Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8070427..8070502 +
1695739731.3662972-CDS-S-ischiensis_contig1:8070426..80705021695739731.3662972-CDS-S-ischiensis_contig1:8070426..8070502Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8070427..8070502 +
1622815489.752872-CDS-S-ischiensis_contig1:8072326..80725001622815489.752872-CDS-S-ischiensis_contig1:8072326..8072500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8072327..8072500 +
1695739731.374425-CDS-S-ischiensis_contig1:8072326..80725001695739731.374425-CDS-S-ischiensis_contig1:8072326..8072500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8072327..8072500 +
1622815489.765321-CDS-S-ischiensis_contig1:8074384..80745141622815489.765321-CDS-S-ischiensis_contig1:8074384..8074514Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8074385..8074514 +
1695739731.3826013-CDS-S-ischiensis_contig1:8074384..80745141695739731.3826013-CDS-S-ischiensis_contig1:8074384..8074514Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8074385..8074514 +
1622815489.775537-CDS-S-ischiensis_contig1:8075412..80755821622815489.775537-CDS-S-ischiensis_contig1:8075412..8075582Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8075413..8075582 +
1695739731.3933072-CDS-S-ischiensis_contig1:8075412..80755821695739731.3933072-CDS-S-ischiensis_contig1:8075412..8075582Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8075413..8075582 +
1622815489.785375-CDS-S-ischiensis_contig1:8077037..80772751622815489.785375-CDS-S-ischiensis_contig1:8077037..8077275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8077038..8077275 +
1695739731.4010766-CDS-S-ischiensis_contig1:8077037..80772751695739731.4010766-CDS-S-ischiensis_contig1:8077037..8077275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8077038..8077275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1194.1

>prot_S-ischiensis_contig1.1194.1 ID=prot_S-ischiensis_contig1.1194.1|Name=mRNA_S-ischiensis_contig1.1194.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=288bp
MANIVGGMAMIASLVLNLSPAKDVYDIHRTKRVGERSILPYVAQFVDGSN
WVVYGSLASYWFPVVVTNLAGLLCGTSWALVYLKTVSGAKAGVEARSFAV
AGGAFLFVMCLGLYAGLTSSLQSQELARDTVGYVADTFNILLYWSPLELT
WKVIRNRSTNGMYLPLSITMFVAPALWATYGLLVGDLFVFIPQVLGVFAG
LLQLSLFARYGVADNNVPVVTPGTDGKRFAGEASPGGATSTTHDDGSPGG
SQGRSPDHEQAPQGATPRAGGPGDDLRRPLVTGTTSG*
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mRNA from alignment at S-ischiensis_contig1:8070207..8077766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1194.1 ID=mRNA_S-ischiensis_contig1.1194.1|Name=mRNA_S-ischiensis_contig1.1194.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7560bp|location=Sequence derived from alignment at S-ischiensis_contig1:8070207..8077766+ (Schizocladia ischiensis KU_0333)
GCTCCGGCTGCTGGGGGACCACGCCCCTTCCAACTAGCCCTGAGATGGCG
AATATCGTAGGAGGAATGGCGATGATAGCGTCGCTGGTGCTGAATCTGAG
CCCGGCGAAGGACGTTTACGGTAAGAGCTGGAAGAGTTGTACGTAGAGCT
AGGCACCGGCCCCCTGGGGCGCTCCAACCATGGCACTGACCGACATTTCC
CCCGCTGTGCTCCGACGCAGACATTCACCGGACTAAGCGCGTGGGGGAAA
GGTCCATCTTGCCATACGTTGCGCAGTTCGTGGATGGATCCAACTGGTAT
GTGTGTTGAGGCCTCTGTGTATCCATCAAGTAGAACTGCGAACTGCTGCG
GGGAGGTTGGGTCCAGTTTCTAAACCCAGCCAGCTGTTTTTGGAAGTCTT
CCCATTTCGACCTGTGTTTCATCCGTCAAACCTCAACTTGCAGACACCGA
ACAACTGTCATTGTTTGGACCAGATCGTAGTAGCACCTCATGCGCTATAA
GCGTCTCGCTGGACCGTGCAGCAACCGCAGTGCCTACTTCGAAGTACTCA
CGTAGTGCATATATCGATCCTCCCGAAGACCTAGTCTTGCGAGATCGTTT
GAAACTAGTTGCTCGGGAACAACTACTCGGGCACCCAGATCACAGAGTAC
ACAGTTGGATTGTCGGATTTCGTGTACTGTCGTTGTCAAAGCACAACATC
TTGTACCTGTACCAGCCCCCCCCGGAACTGCCGCACACGTACTACGTGGT
ACTACACTTGTAAGCAGTACTGGTTGTAGTGTCGAATATAGAGCTAGTCG
CATTTACTGGGACGTGATGCACTGCCATTAGCAGCCCCAACAATTGCCGT
TAAATGGTGCACTGCCATTAGCAGCCCCAACAATTGCCGTTAGATGGTAG
GAACCATGCAGGCCTAGTACAAAGATCACATTGCTCATTGTCTCGTTGAT
CTCTATGGCAGGCACAAATACGTTGGCGGGTTGTGTGCTGGCCACCCGTG
ATGTGCACAGCAGAGCATGCCTCATGACTGTGATGTTTCACGGATACACT
TCTATCATGGTGGCCCTAAACGCAGCCCTTCCACGACTCCCAGTTGCAGT
CGTTTCCGGCTCATGGATGTAGCAGATAAAGGACGATCCCTTGGGATAAG
GGCGCTTTTCTTGCCGGACCGACCTGCATCCTTATCTGGGCGACATTCCA
GACAATAGCGCCGTGAACCAGGGACCGCCTGAATACGATTGCAAAAAGCA
CGACGGAATGGATTCGAACCCATGACATTGATGTGAAGAGAACGAGCAGT
TTTTACATCGGCTGCGGCCGTGCTGGGCGCAAGGCTGGGGCCTACCGTGG
TCTTCTCCACTGCGCAGCCCGGTCACTTCGCCCGTCCGGGCCCCGGTAGC
TACTTCGAAGTACTAAAGCTATTGCCCCATATTCATGTTGTGCTTGCCGT
AGTCCCGAGACCATTGACCATGCGCCTCAACCAAGACGGAGCACGCCCCC
TCCCTAGTAGGTTTTGGGTTGTACTCTACAGCTCTAAACCGCGGCGCCTG
TGAGAAGGGGGATTGAATGTCTCAACCGGCAATACGCGTGTTGGCCAGGT
CCATATGAGTAGATTACACCATAGAAGGCAGAGGGAATTCCTTACAGGGT
CGAGGACGCTTTGTCCTTGATGTGTACCCATCTGCGTCCTTAAGCGGGGC
ATGACTGCAGGCCTTAATGGTGTTCCGCAGTGGCAGACATGACCGACAAG
ACTGAATGCACACGTCTGGGCCCCTTTGAGTACTAGAGTACCAGTACATG
CACCTGCTGCTGTGTGCACTTGTACGCACTGAGTACAATAGTACTTGTAG
TACTTGTCTACGTGCTAGTAGGATACCCCTCCGGAGTAGCGTGGTGTTTG
CAGTGGCCGTCATGGCGTGTGCGACGCCAAGGCCAGCTCTCCCAGTTGTG
ATATTATCGGCGTCCCAAAAAGCGTCTCATCACAAACAGCTCAGCCCTTC
AAACCCCAGGCCGCAGACGACGTCGTTTAAGCTTGGAAAGCCCACCAGAC
AGGGATTGCAGACAGCCCCCCCCTCACTGCTGCTGCTGCGCTCTCTGTGT
GGCCCCCAACGACTCGCAAGGGTGGTGTACGGTTCCCTGGCCAGTTACTG
GTTTCCCGTGGTGGTGACCAACTTGGCGGGGCTGTTGTGTGGCACGTCCT
GGGCGCTTGTGTACCTAAAAACCGTCAGCGGAGCAAAAGCTGGGGTGGAG
GCACGCTCCTTTGCCGTGGCTGGCGGGGCCTTTTTATTCGTCATGTGAGT
GACTGCTCCTGGCACTACTGTAGCACCACGGCATTGTCACCCCATGCAAC
ACACCCACTAAAACGGTAAGGTGCAGGTACTGTAGCACTTGGGGTTACAG
TACCTCAAAGCTGTGGACAGTAGGCATGTACTCGAGTACAAGTACAGTAG
TACTGCCCAGTACTCGAGTACTACGAGTACATGCTCCGTCTCGAACGAGG
CGCGGGCGGGGTCAATGGTCTCGGGACTACGGCGAGCACCACGTGAATAC
ATATCTACTTGTACGTGCCTCAAGTATGTACCATACATGGTCTAAGGTAT
GTACTGTACTGTAGTAGACAGCTTCAGTACCACGAACTTCCTTCCCGTGT
CACTGTGTAGTATGTGCTGTACAGTAGTGCTGACAGGTTACTCTGACCAA
TGATCAATGATGAACATGCATGCGTGTTGCAGCCACAGCCCTCGGAACTC
TGTAGGTGTCGAGCGGTATATGCAAGGGGAGCTCGATTATGGAAGGCTCA
TGTTTCTGTTTCGTTTCGTCAGAATCCATGCTGCTGGGGGCACGCAGGTT
GGTGGCAGGAATTACAGGAGGAGGGGGATCAGCCCATCAAGATTATGAAT
GACCTCCGTCAGACGATGAGACAGTGCGCCACGTCATGCTCGAGTGCCCC
CAGTACAATTCCGCCAGGTTGATCGTATAGTACATGCCACCCTTTCCGCA
GCTCTCCCAGTAGACGGGTACGGGAGATGTAACTTAGCGCCTCAACCCAA
ACCAAACAGGTACTGTAGCGCTCTTGGACCCATCAGGTGACAACTCCTGT
TGGCCAGTGCAGAACCAGATTACTGCCAAGTCTGCAGTGAAAGGATTTCT
TGTTTCCATGTGGAGATTGTGGTCGGAACGAGTAGGTAGCATAGATGGTG
ACCTTACATCTCCCCCCCGCCCTGCCATGGCAAGGTGGGCGACCCCCCTC
CCCTCATGGGCCTAAGTTAGGCCGAGCACGGGGTGGGGGGGGCTACCTGA
CTCTGGTGAGTCAGGGACGCCCGGGGTACCTGTGGAAATGGCCACCCCTC
TTCCCATGGCGGGGGGTGGCCCGCGTTCCCACCCTGGTCCTACCAGGGGT
GGGAGGGGGAGGGGTACTGTACAGTGGCAGTGAGTGCAGTTAGCTTTCAA
GGAGGCGCCAGCAATGTCCGACAGCCCCGTCGTTGGTCAGTTGGGGGGGG
CTGACACTGACAGTCCGTCACGCCCATGTTTCGCTCAACATGACAGCAGT
TCCTGGCGAGTATGTACAGTACATATATATATGTGTGTGTGTGTGTGTGT
ACTCACGTTGTGATTGCCGTAGTCCCGAGACCATTGACATACCAGTACAA
ACTCTGCGAAGTACAAGTATAACTACCTGCACTCATGTCATGCTTGCCGT
GGTTCCGAGACCAATGACCTCGTGCCTTCACCGAGCTGGAGCAGTACACG
GGGCACAATGCGTGTGGTTCTGCTTGGAAGCATGCCTCTACGGTAGAGTA
CATCAGGCTTTATTGTGAGTGCAACCTGTGTGCCTCAGTATGTACGAACG
CCAGCACTTGGGGGTCGACCTACAGTACTCTACACTATACTACTAGAGTA
GCTGAGGCGACGCTCCGGGGCACCTGCGCAAGTTATCCTCCATCCCCATT
CCCGCTACATGGGGAAGGCCGCAGCCGCAGGAGCACTCACGGCAATTGTT
ATGGTATTTTTAACTGCTCCGCCTCGATCGAGGTGCGTGGTCAATGGTCT
CGGGGACTACGGCAAGCACAACACGAGTACTCGTACATGTATATTGTTAA
CCTCCCCAACCCCTTCCTTTCCTGACCACCACCACCGCCACCCCGCACCC
CCCTCATTTCCGGACGACCCTTGTAAAGGTGTTTAGGGTTGTACGCCGGG
CTGACTAGCTCATTGCAGTCCCAGGAGCTTGCAAGGGACACGGTCGGGTA
CGTGGCAGATACTTTCAACATTTTGTTGTACTGGTCTCCACTGGAGCTCA
CGTGGAAGGTGGGGCAAGATGCACGCGGCGGGCAATCTGGGGGGGGCGGG
GGGAGGCGAATTTGTGGGGGGATTGTGTCGTGAAACACCATGGGTGGCGT
TGCCTCTTCTGTGTGCTTGAGTTTGCACGGGGAATGCGTAGTGAAACACC
ATGGGTGGCTTGGCCTCTTTCGCGTGCTTGCCTGTGGCGATGACTTACCT
GGCGGCGCACCTGATCCTCTGGTCACTGTGCCTCAAAGGGAGACTCGCCC
TTCTGTGCAGCAGCAGTGGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGTGTGCAAGTCCGTCCTCTCTAGGCCCACGCGCAT
GTGCTGTAGCGCCACTTTGACTACTGTAGTCCATCTTTTTGGGCCCAATT
TATACTTCCAAGTACTCGTACAGCACTTCACTTCTCGACTACAACTGTAC
ATTGTGGATCGCGGTGCTTACTTTGATTCATTCACTGAAACGAGGTTGGA
CCACAGTCTACGGCCCCAAACAGAACCTCGGCGATTGTACTGGTTCTGAG
CCAAACCGGGTAAGGAAGGAAAACCAGCAACAAGGCTAGGTGAAGAGCCA
GAGCAAGGGTGGTGCATGGACTGAGGAGGGGGGGGTTGACACGGCCAGCA
CATGTTCTCGGCGCCATGGGCATGGAACGAGGGCGGGTTCATCGCGTTGG
TCATGGGCTTCATGTTGCACTTGTATTCTAGATGTTTTAATCATTTTTTT
AGGCCACACGGGACAAAAATGAGGTTATGAGTACTTGTACTTGCACTATT
GTACAGTACATAGCACTGGTACCACGGTACTGTACAGTATGCTGATCGTT
CGCTGCCCCCTCCCTGCCCTGTGGCCACGGGTGACGCCGGCGGAGGTGTT
TGGCAGGTAATTCGCAATCGGTCTACAAACGGCATGTACCTCCCTCTGAG
CATCACCATGTTTGTGGCTCCGGCGCTTTGGGCGACGTACGGGCTCTTGG
TGGGGGATCTGTTTGTGTTCATCCCTCAGGTCCTGGGCGTGTTTGCCGGG
CTCCTGCAGCTGTCGCTCTTCGCCAGGTGAGGGTTGCACAACAAGAGACG
TTTTTGCCTCACACTTGATGAGGTGCTAGGGGAGCCGATGAGCTCTGGGG
TTCATTTGCTCCTTACTCAGAGATCTGGTGCTGTTTGTTACTTACTCAGA
GATACCACTAATACAAGAACACTAAATCTCACACATGTGCGATTGTACCT
CGTTACAATTTATATGAATCACCGGTTCTGGGACCCGCTTCGGGTATCGG
CTTCTTTGGCTCTCCCCGTTTTCCCCCTGTTTCCGGCTGGCTACCAGCTA
GGGCCTCTATCATATGCAGCGAATGCCAGCGAGCATGGACGGCGGCATTC
GGGCTTACAGTACAATTGCACAATTTATGTATGGTAGCAAAGCTGTGAAT
CGAGGCGAAACAAACGGCTGGGACACTTGTTCGTTCTTTGCGGTTGGCCG
GTTTACCGAGAACGGAAATATAACAGAAATCAGAGAGCCAGCAGCTGTTG
CACACTTCTGCTTGCTGTGAGACTGTGTCCCATCTGGGTTTGCCATGGTG
CTCTGATGTCTACGTAGCCTACTCTGCCTCCACAGCCCATGAAAAATGCG
TGCTGTCTGCGTGTCCTCGCCAGCACCCACCCGGCCGTCTGTCCTACTTG
TATCACACACTTGAAATGCCCTGTACATCGCAGTTGTGATGCTTGCAAGC
AGTATAGCTACTTTCTCGGTTGATGTAGGCACTCAGCTTGTGATAAACCT
GCCCTAGTCCCAAGCCCGTTAACCACACGCCTCGGCCCACTATATAGAGA
CAGAGCAGGCCCGCTCCCATCCCTCCGTGGCGGACGTGGCGGAGGGACGG
CCATTTCCATCATGATACCCCCGCCGTCCCTGAACGCACCCAGAGTCAGT
TCTTCCCTGCCTGCCCTCCCCCAGCTAGGCCTCCATTTGTAGGCCGTCAG
GGGAGGGGGGGTCCCCTACCATGCTGTGGCACGGCGGGCGGGGATCCAAG
GTCACCATCTACACACGTACTTCGGAGTACTCGTTCCAACCGCACTCGCC
GCACAGAACTTGAAAAGTTGGCAGTGCTTCTGCGCTGGCCAACCAGAGAT
CAGAGATGGATCCCAGAGTGCTGTCATCTGTTTGATTGGGGTTTGCAGCA
TTACAGGAAGTACATCTGGCATGACTGTCTGCTGGGAGAGCTGCGGAAAG
GGCGCCGTCCATCGTGCAAGCATACTACTCAGTGCTTATACACCTTCATG
CACTGCGGCTGGGAAAATGGCGCTATAGTCATTGACAGGCATGGCCACGT
TGCCGAGTTGCAACGCCATTGCCGCGACATGACAGACACTAGCTCTGTTC
CACTCCCGTTTTTTTTTCACAGTTTTTCACCCATGACCACCGGGGAGACG
CACCTGCTTTGCCGGTCTCACTTCTGCACACATCCGCGCCCTCGGGCGGC
CCTGTGGGCCTGTGGGCCGCCTTACCTACAGGTATGGAGTCGCAGATAAC
AACGTCCCAGTGGTGACGCCCGGCACCGATGGCAAACGCTTCGCCGGGGA
GGCGTCCCCTGGCGGAGCAACAAGTACAACGCACGATGATGGCAGCCCTG
GCGGGTCACAGGGCAGGTCCCCCGACCATGAGCAGGCTCCGCAAGGGGCC
ACTCCGCGGGCTGGAGGCCCGGGGGATGATCTGCGGCGGCCTCTGGTGAC
AGGAACCACCTCAGGGTAGCCTCTTGCTGCGGGCCAACTTGAAGATGTTT
TTTTGCCGGGAGGGGCCTCGGCTCCGGCTCGGAGCGGGCTGGACCGTGTT
GTGCCCCCCTGAAGGTACATAGCTCAGTAATAGTCACGGTATAGAGTGGA
CCGGCACTGTGTCGCCGTGTCGGTGCAGTGGCTCCCTCCAGCGGGGAATG
AGAATGGCCTGGAGCTACTCAGTCTGTGCCGCTCCCGGTGCACCTCCAGG
TGTTGTTTTGCAGCGCGTTCTCATCTTGTCCTTGCCAGTTACTACTGTGT
ACAGTACCGGTACCGCAGTACAGCACACCCTCCCCTGGCGAGCTAAGGAA
GGGCCACTGTTGAGGTCTATAGTGGCGTGGCCTGCACCTCGCCCTGTGTT
GTTCCTGTCAATACAGTAGTACGAGTAGTAGCTGTACGACTCGGAGCACA
AGTACAATTGCTCAGGGCCGTAACGGCATTGTTAATAACTTGAAGAAAAC
TGTTTGCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8070207..8077766+

>mRNA_S-ischiensis_contig1.1194.1 ID=mRNA_S-ischiensis_contig1.1194.1|Name=mRNA_S-ischiensis_contig1.1194.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1728bp|location=Sequence derived from alignment at S-ischiensis_contig1:8070207..8077766+ (Schizocladia ischiensis KU_0333)
ATGGCGAATATCGTAGGAGGAATGGCGATGATAGCGTCGCTGGTGCTGAA
TCTGAGCCCGGCGAAGGACGTTTACGATGGCGAATATCGTAGGAGGAATG
GCGATGATAGCGTCGCTGGTGCTGAATCTGAGCCCGGCGAAGGACGTTTA
CGACATTCACCGGACTAAGCGCGTGGGGGAAAGGTCCATCTTGCCATACG
TTGCGCAGTTCGTGGATGGATCCAACTGACATTCACCGGACTAAGCGCGT
GGGGGAAAGGTCCATCTTGCCATACGTTGCGCAGTTCGTGGATGGATCCA
ACTGGGTGGTGTACGGTTCCCTGGCCAGTTACTGGTTTCCCGTGGTGGTG
ACCAACTTGGCGGGGCTGTTGTGTGGCACGTCCTGGGCGCTTGTGTACCT
AAAAACCGTCAGCGGAGCAAAAGCTGGGGTGGAGGCACGCTCCTTTGCCG
TGGCTGGCGGGGCCTTTTTATTCGTCATGGTGGTGTACGGTTCCCTGGCC
AGTTACTGGTTTCCCGTGGTGGTGACCAACTTGGCGGGGCTGTTGTGTGG
CACGTCCTGGGCGCTTGTGTACCTAAAAACCGTCAGCGGAGCAAAAGCTG
GGGTGGAGGCACGCTCCTTTGCCGTGGCTGGCGGGGCCTTTTTATTCGTC
ATGTGTTTAGGGTTGTACGCCGGGCTGACTAGCTCATTGCAGTCCCAGGA
GCTTGCAAGGGACACGGTCGGGTACGTGGCAGATACTTTCAACATTTTGT
TGTACTGGTCTCCACTGGAGCTCACGTGGAAGGTGTTTAGGGTTGTACGC
CGGGCTGACTAGCTCATTGCAGTCCCAGGAGCTTGCAAGGGACACGGTCG
GGTACGTGGCAGATACTTTCAACATTTTGTTGTACTGGTCTCCACTGGAG
CTCACGTGGAAGGTAATTCGCAATCGGTCTACAAACGGCATGTACCTCCC
TCTGAGCATCACCATGTTTGTGGCTCCGGCGCTTTGGGCGACGTACGGGC
TCTTGGTGGGGGATCTGTTTGTGTTCATCCCTCAGGTCCTGGGCGTGTTT
GCCGGGCTCCTGCAGCTGTCGCTCTTCGCCAGGTAATTCGCAATCGGTCT
ACAAACGGCATGTACCTCCCTCTGAGCATCACCATGTTTGTGGCTCCGGC
GCTTTGGGCGACGTACGGGCTCTTGGTGGGGGATCTGTTTGTGTTCATCC
CTCAGGTCCTGGGCGTGTTTGCCGGGCTCCTGCAGCTGTCGCTCTTCGCC
AGGTATGGAGTCGCAGATAACAACGTCCCAGTGGTGACGCCCGGCACCGA
TGGCAAACGCTTCGCCGGGGAGGCGTCCCCTGGCGGAGCAACAAGTACAA
CGCACGATGATGGCAGCCCTGGCGGGTCACAGGGCAGGTCCCCCGACCAT
GAGCAGGCTCCGCAAGGGGCCACTCCGCGGGCTGGAGGCCCGGGGGATGA
TCTGCGGCGGCCTCTGGTGACAGGAACCACCTCAGGGTAGGTATGGAGTC
GCAGATAACAACGTCCCAGTGGTGACGCCCGGCACCGATGGCAAACGCTT
CGCCGGGGAGGCGTCCCCTGGCGGAGCAACAAGTACAACGCACGATGATG
GCAGCCCTGGCGGGTCACAGGGCAGGTCCCCCGACCATGAGCAGGCTCCG
CAAGGGGCCACTCCGCGGGCTGGAGGCCCGGGGGATGATCTGCGGCGGCC
TCTGGTGACAGGAACCACCTCAGGGTAG
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