mRNA_S-ischiensis_contig1.1188.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1188.1
Unique NamemRNA_S-ischiensis_contig1.1188.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8017739..8018759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size524
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.0637243-CDS-S-ischiensis_contig1:8017738..80180921622815489.0637243-CDS-S-ischiensis_contig1:8017738..8018092Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8017739..8018092 +
1695739730.84544-CDS-S-ischiensis_contig1:8017738..80180921695739730.84544-CDS-S-ischiensis_contig1:8017738..8018092Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8017739..8018092 +
1622815489.0798438-CDS-S-ischiensis_contig1:8018591..80187591622815489.0798438-CDS-S-ischiensis_contig1:8018591..8018759Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8018592..8018759 +
1695739730.856183-CDS-S-ischiensis_contig1:8018591..80187591695739730.856183-CDS-S-ischiensis_contig1:8018591..8018759Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8018592..8018759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1188.1prot_S-ischiensis_contig1.1188.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8017739..8018759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1188.1

>prot_S-ischiensis_contig1.1188.1 ID=prot_S-ischiensis_contig1.1188.1|Name=mRNA_S-ischiensis_contig1.1188.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=174bp
EKQKDDEGVRLAEKGSPSARPIVGAPTARPAGENPETTVQAVLCVSLETL
PDGIRDRYFSMAIFPQGYPVPVSALAAVWGLEGSVAGDSVWLVMEVLESR
QLVEWRPEGWGFVLHGLQVDFIQQCLVGPSWDLLRETAAARWANYLARMD
PAWAYPTAALPPPVSTATAMTAKG
back to top

mRNA from alignment at S-ischiensis_contig1:8017739..8018759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1188.1 ID=mRNA_S-ischiensis_contig1.1188.1|Name=mRNA_S-ischiensis_contig1.1188.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1021bp|location=Sequence derived from alignment at S-ischiensis_contig1:8017739..8018759+ (Schizocladia ischiensis KU_0333)
GAGAAGCAGAAGGACGATGAGGGTGTGAGACTGGCCGAGAAGGGCTCGCC
CAGTGCCAGGCCCATTGTCGGTGCCCCCACTGCCCGCCCGGCCGGCGAAA
ACCCTGAAACTACCGTCCAGGCCGTTCTCTGTGTCAGCTTGGAGACCCTC
CCAGATGGCATCCGGGACCGGTATTTTTCCATGGCCATCTTCCCGCAGGG
CTACCCCGTCCCGGTATCAGCGCTGGCAGCGGTGTGGGGGTTGGAAGGCA
GCGTGGCGGGGGACAGCGTGTGGCTGGTGATGGAAGTTCTGGAGTCGCGC
CAGCTGGTGGAGTGGCGGCCGGAGGGATGGGGATTTGTGTTGCACGGCCT
GCAGGTGTGTGTGTGTGCGCGTGTGTGATGTGATGCGATGTGATGCGCAC
ACAAAAGGACTGTAGTTTCATCACATCACATCACAAAAACCATCGGTGTC
TGTGTATGTGTGTGAGCGGCCGTGTGTGTGCGCCAGTCTGTGCTTGCTGT
CACGAGATGGAGGGAGGGACGCGATGGCTGACGGCCTGAGCTCGATGCGA
GCAGTGCCCTCCAGGGAGAGATTTCACGTCCTCGTGAAAAGATGGCCGCC
CAGCATGAGGCACCGATGTGCCATGCACAGCAGGACTTTGAGAAAGCCTC
AACAAGACACAGACGCCTGTACAAGCACAGTACTGTATTGTACTTGCCGG
GGGTTGTACACGAACACCTCTGCCGCTGACTACGGTGCAACTTGTATTCG
CGGGCCATCACAGCCTCAACCCTTGACTGCTTGGCTTGGTCTGCCGTGAG
CACCTCCTGACTCACCCCCCCCCCCCCCCGCCGCCCAATGACAATACACC
CAGGTGGACTTCATCCAGCAGTGCCTGGTAGGCCCCTCTTGGGACCTCCT
TCGCGAGACCGCAGCGGCTCGGTGGGCCAACTACCTCGCTCGCATGGACC
CCGCATGGGCATACCCCACGGCCGCTCTCCCCCCCCCCGTGTCTACTGCT
ACCGCCATGACAGCCAAAGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:8017739..8018759+

>mRNA_S-ischiensis_contig1.1188.1 ID=mRNA_S-ischiensis_contig1.1188.1|Name=mRNA_S-ischiensis_contig1.1188.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1044bp|location=Sequence derived from alignment at S-ischiensis_contig1:8017739..8018759+ (Schizocladia ischiensis KU_0333)
GAGAAGCAGAAGGACGATGAGGGTGTGAGACTGGCCGAGAAGGGCTCGCC
CAGTGCCAGGCCCATTGTCGGTGCCCCCACTGCCCGCCCGGCCGGCGAAA
ACCCTGAAACTACCGTCCAGGCCGTTCTCTGTGTCAGCTTGGAGACCCTC
CCAGATGGCATCCGGGACCGGTATTTTTCCATGGCCATCTTCCCGCAGGG
CTACCCCGTCCCGGTATCAGCGCTGGCAGCGGTGTGGGGGTTGGAAGGCA
GCGTGGCGGGGGACAGCGTGTGGCTGGTGATGGAAGTTCTGGAGTCGCGC
CAGCTGGTGGAGTGGCGGCCGGAGGGATGGGGATTTGTGTTGCACGGCCT
GCAGGAGAAGCAGAAGGACGATGAGGGTGTGAGACTGGCCGAGAAGGGCT
CGCCCAGTGCCAGGCCCATTGTCGGTGCCCCCACTGCCCGCCCGGCCGGC
GAAAACCCTGAAACTACCGTCCAGGCCGTTCTCTGTGTCAGCTTGGAGAC
CCTCCCAGATGGCATCCGGGACCGGTATTTTTCCATGGCCATCTTCCCGC
AGGGCTACCCCGTCCCGGTATCAGCGCTGGCAGCGGTGTGGGGGTTGGAA
GGCAGCGTGGCGGGGGACAGCGTGTGGCTGGTGATGGAAGTTCTGGAGTC
GCGCCAGCTGGTGGAGTGGCGGCCGGAGGGATGGGGATTTGTGTTGCACG
GCCTGCAGGTGGACTTCATCCAGCAGTGCCTGGTAGGCCCCTCTTGGGAC
CTCCTTCGCGAGACCGCAGCGGCTCGGTGGGCCAACTACCTCGCTCGCAT
GGACCCCGCATGGGCATACCCCACGGCCGCTCTCCCCCCCCCCGTGTCTA
CTGCTACCGCCATGACAGCCAAAGGCGTGGACTTCATCCAGCAGTGCCTG
GTAGGCCCCTCTTGGGACCTCCTTCGCGAGACCGCAGCGGCTCGGTGGGC
CAACTACCTCGCTCGCATGGACCCCGCATGGGCATACCCCACGGCCGCTC
TCCCCCCCCCCGTGTCTACTGCTACCGCCATGACAGCCAAAGGC
back to top