mRNA_S-ischiensis_contig1.1186.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1186.1
Unique NamemRNA_S-ischiensis_contig1.1186.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8013396..8014437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1042
Cds size1041
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815377.6499376-CDS-S-ischiensis_contig1:8013395..80144361622815377.6499376-CDS-S-ischiensis_contig1:8013395..8014436Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8013396..8014436 +
1695739665.9483008-CDS-S-ischiensis_contig1:8013395..80144361695739665.9483008-CDS-S-ischiensis_contig1:8013395..8014436Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8013396..8014436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1186.1prot_S-ischiensis_contig1.1186.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8013396..8014436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1186.1

>prot_S-ischiensis_contig1.1186.1 ID=prot_S-ischiensis_contig1.1186.1|Name=mRNA_S-ischiensis_contig1.1186.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=347bp
IPSRGSRRLRNLLAGCGCANNPEAVAPEATAPWATARGPDLHVPATARTK
WFLKRGRSRGWTGSLSLDTPGPLDPGPRVAGSVSCPWRVSPPPPPCRPMF
AALAGLQAAVARAVVYREQLEALLSLCERVSSTLSRLAPGRLFAVLDDVA
AEMEAGRQLAEALDPDQLLFWIVAPDLPRPGDVASTMWARQMRIRGLLAL
GEAMAAAPQVLLSPPPPLPRPPEGDDTLAALCRHAAGRALQLGGLRALAD
NDQEVAALATKACESMTPRALEPESPASALRRQLWRASDLARAGGSGGSS
SRSVGSDGAVGSGDGMPWAAPPEDGVPPLPRNFVDRHTLVANAVASL
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mRNA from alignment at S-ischiensis_contig1:8013396..8014437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1186.1 ID=mRNA_S-ischiensis_contig1.1186.1|Name=mRNA_S-ischiensis_contig1.1186.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1042bp|location=Sequence derived from alignment at S-ischiensis_contig1:8013396..8014437+ (Schizocladia ischiensis KU_0333)
ATCCCATCCCGCGGATCTCGGCGCTTGCGCAACCTGTTGGCGGGGTGTGG
GTGTGCAAACAACCCGGAGGCCGTGGCCCCGGAGGCCACGGCTCCGTGGG
CGACCGCCCGCGGGCCCGACCTCCATGTCCCAGCGACGGCACGAACGAAG
TGGTTCTTAAAACGTGGCAGGTCCCGTGGCTGGACGGGGTCGCTCAGCTT
GGACACGCCTGGGCCACTGGACCCGGGGCCAAGGGTGGCAGGCAGCGTAT
CCTGCCCGTGGCGTGTGAGCCCGCCGCCTCCCCCATGTCGCCCGATGTTT
GCCGCGCTGGCTGGGCTCCAAGCAGCTGTGGCCCGGGCTGTTGTGTACAG
GGAGCAGCTGGAGGCTCTCCTCTCGCTGTGTGAGCGGGTATCCTCGACCC
TGTCCCGCCTGGCCCCGGGGCGCCTGTTTGCCGTGCTTGATGATGTGGCG
GCAGAGATGGAGGCGGGGCGGCAGTTAGCTGAGGCCCTTGACCCAGATCA
GCTGCTCTTCTGGATTGTGGCCCCGGACTTGCCCCGCCCCGGGGACGTTG
CTTCCACAATGTGGGCACGGCAGATGCGCATCCGTGGCCTGTTGGCACTT
GGTGAGGCCATGGCGGCAGCACCGCAGGTGCTCCTGTCACCACCGCCACC
GCTGCCACGGCCACCAGAGGGCGACGACACGCTTGCCGCGCTCTGCAGGC
ATGCTGCTGGCCGCGCACTCCAGCTGGGAGGTCTGCGTGCTCTTGCCGAC
AATGACCAGGAGGTGGCGGCCCTGGCCACCAAGGCCTGTGAGAGCATGAC
CCCCCGAGCGCTGGAACCAGAATCCCCCGCATCGGCGCTGCGCCGCCAGC
TGTGGCGCGCCAGTGACCTCGCCCGGGCAGGTGGGAGCGGCGGCAGCAGC
AGCAGAAGCGTTGGCAGCGATGGCGCCGTCGGTTCAGGTGATGGGATGCC
CTGGGCGGCGCCACCAGAGGATGGCGTGCCCCCCCTGCCTCGCAATTTTG
TCGACCGGCACACGCTTGTGGCGAACGCCGTGGCCTCGCTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8013396..8014437+

>mRNA_S-ischiensis_contig1.1186.1 ID=mRNA_S-ischiensis_contig1.1186.1|Name=mRNA_S-ischiensis_contig1.1186.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2082bp|location=Sequence derived from alignment at S-ischiensis_contig1:8013396..8014437+ (Schizocladia ischiensis KU_0333)
ATCCCATCCCGCGGATCTCGGCGCTTGCGCAACCTGTTGGCGGGGTGTGG
GTGTGCAAACAACCCGGAGGCCGTGGCCCCGGAGGCCACGGCTCCGTGGG
CGACCGCCCGCGGGCCCGACCTCCATGTCCCAGCGACGGCACGAACGAAG
TGGTTCTTAAAACGTGGCAGGTCCCGTGGCTGGACGGGGTCGCTCAGCTT
GGACACGCCTGGGCCACTGGACCCGGGGCCAAGGGTGGCAGGCAGCGTAT
CCTGCCCGTGGCGTGTGAGCCCGCCGCCTCCCCCATGTCGCCCGATGTTT
GCCGCGCTGGCTGGGCTCCAAGCAGCTGTGGCCCGGGCTGTTGTGTACAG
GGAGCAGCTGGAGGCTCTCCTCTCGCTGTGTGAGCGGGTATCCTCGACCC
TGTCCCGCCTGGCCCCGGGGCGCCTGTTTGCCGTGCTTGATGATGTGGCG
GCAGAGATGGAGGCGGGGCGGCAGTTAGCTGAGGCCCTTGACCCAGATCA
GCTGCTCTTCTGGATTGTGGCCCCGGACTTGCCCCGCCCCGGGGACGTTG
CTTCCACAATGTGGGCACGGCAGATGCGCATCCGTGGCCTGTTGGCACTT
GGTGAGGCCATGGCGGCAGCACCGCAGGTGCTCCTGTCACCACCGCCACC
GCTGCCACGGCCACCAGAGGGCGACGACACGCTTGCCGCGCTCTGCAGGC
ATGCTGCTGGCCGCGCACTCCAGCTGGGAGGTCTGCGTGCTCTTGCCGAC
AATGACCAGGAGGTGGCGGCCCTGGCCACCAAGGCCTGTGAGAGCATGAC
CCCCCGAGCGCTGGAACCAGAATCCCCCGCATCGGCGCTGCGCCGCCAGC
TGTGGCGCGCCAGTGACCTCGCCCGGGCAGGTGGGAGCGGCGGCAGCAGC
AGCAGAAGCGTTGGCAGCGATGGCGCCGTCGGTTCAGGTGATGGGATGCC
CTGGGCGGCGCCACCAGAGGATGGCGTGCCCCCCCTGCCTCGCAATTTTG
TCGACCGGCACACGCTTGTGGCGAACGCCGTGGCCTCGCTGATCCCATCC
CGCGGATCTCGGCGCTTGCGCAACCTGTTGGCGGGGTGTGGGTGTGCAAA
CAACCCGGAGGCCGTGGCCCCGGAGGCCACGGCTCCGTGGGCGACCGCCC
GCGGGCCCGACCTCCATGTCCCAGCGACGGCACGAACGAAGTGGTTCTTA
AAACGTGGCAGGTCCCGTGGCTGGACGGGGTCGCTCAGCTTGGACACGCC
TGGGCCACTGGACCCGGGGCCAAGGGTGGCAGGCAGCGTATCCTGCCCGT
GGCGTGTGAGCCCGCCGCCTCCCCCATGTCGCCCGATGTTTGCCGCGCTG
GCTGGGCTCCAAGCAGCTGTGGCCCGGGCTGTTGTGTACAGGGAGCAGCT
GGAGGCTCTCCTCTCGCTGTGTGAGCGGGTATCCTCGACCCTGTCCCGCC
TGGCCCCGGGGCGCCTGTTTGCCGTGCTTGATGATGTGGCGGCAGAGATG
GAGGCGGGGCGGCAGTTAGCTGAGGCCCTTGACCCAGATCAGCTGCTCTT
CTGGATTGTGGCCCCGGACTTGCCCCGCCCCGGGGACGTTGCTTCCACAA
TGTGGGCACGGCAGATGCGCATCCGTGGCCTGTTGGCACTTGGTGAGGCC
ATGGCGGCAGCACCGCAGGTGCTCCTGTCACCACCGCCACCGCTGCCACG
GCCACCAGAGGGCGACGACACGCTTGCCGCGCTCTGCAGGCATGCTGCTG
GCCGCGCACTCCAGCTGGGAGGTCTGCGTGCTCTTGCCGACAATGACCAG
GAGGTGGCGGCCCTGGCCACCAAGGCCTGTGAGAGCATGACCCCCCGAGC
GCTGGAACCAGAATCCCCCGCATCGGCGCTGCGCCGCCAGCTGTGGCGCG
CCAGTGACCTCGCCCGGGCAGGTGGGAGCGGCGGCAGCAGCAGCAGAAGC
GTTGGCAGCGATGGCGCCGTCGGTTCAGGTGATGGGATGCCCTGGGCGGC
GCCACCAGAGGATGGCGTGCCCCCCCTGCCTCGCAATTTTGTCGACCGGC
ACACGCTTGTGGCGAACGCCGTGGCCTCGCTG
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