mRNA_S-ischiensis_contig1.1177.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1177.1
Unique NamemRNA_S-ischiensis_contig1.1177.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7958371..7958848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size479
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815377.61195-CDS-S-ischiensis_contig1:7958370..79588471622815377.61195-CDS-S-ischiensis_contig1:7958370..7958847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7958371..7958847 +
1695739665.939097-CDS-S-ischiensis_contig1:7958370..79588471695739665.939097-CDS-S-ischiensis_contig1:7958370..7958847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7958371..7958847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1177.1prot_S-ischiensis_contig1.1177.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7958371..7958847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1177.1

>prot_S-ischiensis_contig1.1177.1 ID=prot_S-ischiensis_contig1.1177.1|Name=mRNA_S-ischiensis_contig1.1177.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=159bp
LLLLLLLLLGPSRSGPAVGNAAVLNPVYNTPAACPLLLLLLRQLASDAGG
RAPVGRGLVVDDQLLGAAGQEGVRAKYARLGPPRGQRPIREEPLLRAVPA
LPGAGRVATPAPAAVSAPTKGAPARAQRCGMVTCVAAGADAGARARRVAE
GRRGAPGGR
back to top

mRNA from alignment at S-ischiensis_contig1:7958371..7958848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1177.1 ID=mRNA_S-ischiensis_contig1.1177.1|Name=mRNA_S-ischiensis_contig1.1177.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=478bp|location=Sequence derived from alignment at S-ischiensis_contig1:7958371..7958848+ (Schizocladia ischiensis KU_0333)
CTTCTTCTCCTCCTCCTCCTCCTCTTGGGCCCCAGCCGGTCGGGCCCGGC
GGTCGGCAACGCCGCCGTTCTCAATCCCGTTTACAACACCCCTGCCGCCT
GCCCCCTCCTCCTCCTCCTCCTGAGGCAACTGGCGAGTGATGCGGGGGGC
CGGGCGCCGGTCGGACGCGGACTGGTCGTAGATGACCAGCTTCTTGGCGC
TGCTGGGCAGGAAGGCGTCCGGGCTAAGTATGCCCGACTGGGCCCCCCCC
GGGGTCAGCGCCCCATCCGAGAGGAGCCGCTGCTGCGTGCCGTCCCTGCG
CTGCCCGGAGCCGGGCGTGTCGCCACCCCCGCCCCCGCCGCCGTCTCCGC
CCCCACCAAAGGCGCCCCGGCGCGGGCTCAGCGTTGTGGCATGGTAACCT
GCGTAGCCGCGGGGGCGGATGCGGGCGCCAGAGCGAGGCGCGTGGCGGAA
GGGCGACGAGGTGCCCCGGGCGGGCGTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7958371..7958848+

>mRNA_S-ischiensis_contig1.1177.1 ID=mRNA_S-ischiensis_contig1.1177.1|Name=mRNA_S-ischiensis_contig1.1177.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=954bp|location=Sequence derived from alignment at S-ischiensis_contig1:7958371..7958848+ (Schizocladia ischiensis KU_0333)
CTTCTTCTCCTCCTCCTCCTCCTCTTGGGCCCCAGCCGGTCGGGCCCGGC
GGTCGGCAACGCCGCCGTTCTCAATCCCGTTTACAACACCCCTGCCGCCT
GCCCCCTCCTCCTCCTCCTCCTGAGGCAACTGGCGAGTGATGCGGGGGGC
CGGGCGCCGGTCGGACGCGGACTGGTCGTAGATGACCAGCTTCTTGGCGC
TGCTGGGCAGGAAGGCGTCCGGGCTAAGTATGCCCGACTGGGCCCCCCCC
GGGGTCAGCGCCCCATCCGAGAGGAGCCGCTGCTGCGTGCCGTCCCTGCG
CTGCCCGGAGCCGGGCGTGTCGCCACCCCCGCCCCCGCCGCCGTCTCCGC
CCCCACCAAAGGCGCCCCGGCGCGGGCTCAGCGTTGTGGCATGGTAACCT
GCGTAGCCGCGGGGGCGGATGCGGGCGCCAGAGCGAGGCGCGTGGCGGAA
GGGCGACGAGGTGCCCCGGGCGGGCGTCTTCTTCTCCTCCTCCTCCTCCT
CTTGGGCCCCAGCCGGTCGGGCCCGGCGGTCGGCAACGCCGCCGTTCTCA
ATCCCGTTTACAACACCCCTGCCGCCTGCCCCCTCCTCCTCCTCCTCCTG
AGGCAACTGGCGAGTGATGCGGGGGGCCGGGCGCCGGTCGGACGCGGACT
GGTCGTAGATGACCAGCTTCTTGGCGCTGCTGGGCAGGAAGGCGTCCGGG
CTAAGTATGCCCGACTGGGCCCCCCCCGGGGTCAGCGCCCCATCCGAGAG
GAGCCGCTGCTGCGTGCCGTCCCTGCGCTGCCCGGAGCCGGGCGTGTCGC
CACCCCCGCCCCCGCCGCCGTCTCCGCCCCCACCAAAGGCGCCCCGGCGC
GGGCTCAGCGTTGTGGCATGGTAACCTGCGTAGCCGCGGGGGCGGATGCG
GGCGCCAGAGCGAGGCGCGTGGCGGAAGGGCGACGAGGTGCCCCGGGCGG
GCGT
back to top