mRNA_S-ischiensis_contig1.1175.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1175.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE) HSP 1 Score: 244 bits (624), Expect = 9.270e-64 Identity = 221/668 (33.08%), Postives = 278/668 (41.62%), Query Frame = -2
Query: 600 GRVRRGQG-------MGRGARVSWGPGALL---------VHTGQDGVHVVRIHATPSRADQTPADLYVKALD------------VTRRHSVVTEWGGGEAPHWGLPQRTAVKGDRRRRGDADADADQAAHDACATLVDCMQAHAQL-----------ARESGGSDPGGPDWIVEQSWNLANAMWGQEELRDEAPALVLPLAGTTEEP---TGXXXXXXXXRQARRRAALGAWLEAVADACLPRASPGVDEGRPGK---------SAPTWERVLDLLTVHRVEEAAEAXXXXXXXXLXXXXXXXXXXXWXXXXXXXXXXXXXXXRSMLVKQCQLWREPDGKPPCMPAALLRAYVLLSGHGFGDLALTAGEESGEGAGAWSPRPSLDWLRQLGLCLWY----------EERCR----GRDAVPEAVRLFEDFARKGGANLPVARYLVEPTHFPA--VDAARRELELAYMGGRT--AG-ELEDGGGGGGIPGRGTCVLLHQLRLWPRVGSRGLVDG-----LLACLDPLSVTPDVLDYRHAWHLQAVARALGXXXXXXXXXXXXXXXEAVADSLCFQLLAASEACGFHDGDADDGQHVLLWPFAVFVALN-NGDAERRNRAACELVMRYGHGLAGARAGTAGGHAWSFLVEELGVPQAWMDEAAAVRAAYE 2375
G VR GQ MGRG R SWGP L G GV V R TPS +D+ LYV+ L +RH P W LP RRR D + D TLV C+ + ++ +RE+G + P+W++EQSW LA+AMWGQEE E LPL G + T ARR AA+G WL +C+P S G TW RVL+LL+V RV +AA A L L +Q W + G MP LL GF D+ L G G S RPSLDW+RQLGLCLW+ E+ R G V A+ ++ G A LP ARY +EPTH + +D EL YM AG LE GG GR CVL L ++P + G V G LL+ L+P++VTPDV+DYRH+WHL V ALG AV + L FQL++ V LW +AV+VAL G +RR A ELV+R+G+ + GA + FL E LG+P AW+ EAAAVRA YE
Sbjct: 1420 GAVRAGQAVADLGLRMGRGFRASWGPDGKLFCPRAMGGGARNGFHGVRVSRFDPTPSASDRDVHRLYVEPLRNHLGSAGPLAEAQAKRHGAAA---AAVPPRWALP---------RRRNDRPQNYD--------TLVRCIHGYVEVHRLAGAAATSSSREAGAATEDSPEWVLEQSWRLASAMWGQEE--GEGRVQDLPLPGDLQRAADLTLAGDCDGGSPAARREAAVGDWLARAVSSCVPSPSGGPSXXXXXXXXXXXXXDADRETWRRVLELLSVRRVHDAAVAAMAAGLPRLAVMLTAVATQG-----GGGGRPPARYGSKFLAQQAAQW-QAAGADARMPQEAFSVVQLLGREGFRDVGLRGLISKGPGG---SLRPSLDWMRQLGLCLWFGAGASAGIGGEDGDRDGGSGGGVVANAIEAYDTLVADGEALLPTARYFLEPTHHESAHLDKVCTELRRVYMPPPRPPAGLSLEKSGGEDRGYGRDRCVLRCLLAMYPSRKAGGGVGGASGVSLLSALEPMAVTPDVMDYRHSWHLMNVVEALGVAEVQDRAKAA-----AVTEGLRFQLVS-----------------VGLWEWAVYVALTAEGGPDRRAATARELVLRHGYRVLGAPVNSPDAERGRFL-ENLGIPGAWLHEAAAVRAGYE 2033
BLAST of mRNA_S-ischiensis_contig1.1175.1 vs. uniprot
Match: A0A835Z2A3_9STRA (Nuclear protein 96-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2A3_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.130e-31 Identity = 164/559 (29.34%), Postives = 228/559 (40.79%), Query Frame = -2
Query: 615 VHVVRIHATPSRADQTPADLYVKALDVTRRHSVVTEWGGGEAPHWGLPQRTAVKGDRRRRGDADADADQAAHDACATLVDCMQAHAQLARESGGSDPGGPDWIVEQSWNLANAMWGQEELRDEAPALVLPLAGTTEEPTGXXXXXXXXRQARRRAALGAWLE-AVADACLPRASPGVDEGRPGKSAPTWERVLDLLTVHRVEEAAEAXXXXXXXXLXXXXXXXXXXXWXXXXXXXXXXXXXXXRSMLVKQ-CQLWREPDGKPPCMPAALLRAYVLLSGHGFGDLALTAGEESGEGAGAWSPRPSLDWLRQLGLCLWYEERCRGRDAVPEAVRLFEDFARKGGANLPVARYLVEPTHFPAVDAARRELELAYMGGRTAGELEDGGGGGGIPGRGTCVLLHQLRLWPRVGSRGLVDGLLACLDPLSVTPDVLDYRHAWHLQAVARALGXXXXXXXXXXXXXXXEAVADSLCFQLLAASEACGFHDGDADDGQHVLLWPFAVFVALNNGDAERRNRAACELVMRYGHGLAGARAGTAGGHAWSFLVEELGVPQAWMDEAAAV 2285
+ V ++ ATPSR + A LY AL + +H+ +E P + AV G + A Q HD + + QA A+ PDW V Q W L NA+WG E+ +E A P + E R+ + AWL A AD AS G ++ T ++L+LL+VH+++ AAE L R V+Q QL + K A A LLSG L+ A A A L+WLR LGLCLWY+ G + A+ + KGGA+ P+ARY+V+PTHF + D R+ +L L +G GG RG C+L +RL VG L LDPL TPDVLDYRHAWHL V +A+ VAD+L QL+ + LW +A +V LN D + R+ +LV+R HG A + G ++ EL +P W+ E+ A+
Sbjct: 856 ISVRKLTATPSRHEDAAA-LYQTALTLHLQHAKCSE---AVLPERAVSAEIAVA---PSWGLENESAQQLVHDHISRSAELGQARGVPAQ---------PDWAVAQGWRLVNALWGSEKQLEEGQA---PADLSFEH---------------RQRFVSAWLSSATADCLAAAASDGAEKPS------TMAQILELLSVHQIDGAAELAAETGLLRLSTVLAFAGVGN-------------AVVRQEAVEQLAQLLSVDENKYD--NTAFTNALRLLSGEELACLSDFAPH-----AAARDGVQGLNWLRHLGLCLWYQY---GGVELAAALARYAQQVVKGGADAPIARYIVDPTHF-SQDQLPRKCDLLEK-----QFLPEGVGGS----RGLCLLYRLMRL--AVGEDTLQP---LYLDPLCCTPDVLDYRHAWHLLTVLQAMQVTVCMPGTVML------VADALVSQLVGSG-----------------LWHWAAYVLLNIDDEQVRSSRVHDLVLR--HGYAVLHDMSDAGLEVKQVLTELRIPVQWLYESTAL 1311
BLAST of mRNA_S-ischiensis_contig1.1175.1 vs. uniprot
Match: A0A4D9D7X3_9STRA (Peptidase S59 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7X3_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.390e-14 Identity = 158/623 (25.36%), Postives = 214/623 (34.35%), Query Frame = -2
Query: 597 MGRGARVSWGPGALLVHTGQDGVHVVRIHATPSRADQTPADLYVKALDVTRRHSVVTEWGGGE---------APHWGLPQ--------RTAVKGDRRRRGDADADADQAAHDACATLVDCMQAHAQLARESGGSDPGGPDWIVEQSWNLANAMWGQEELRDEAPALVLPLAGTTEE------PTGXXXXXXXXRQARRRAALGAWLEAVADACLPRASPGVDEGRPGKSAPTWERVLDLLTVHRVEEAAEAXXXXXXXXLXXXXXXXXXXXWXXXXXXXXXXXXXXXRSMLVKQCQLWREPDGKPPCMPAALLRAYVLLSGHGFGDLALTAGEESGEGAGAWSPRPSLDWLRQLGLCLWYEERCRGRDAVPEAVRLFEDFARKGGANLPVARYLVEPTHFPAVDAARRELELAYMGGRTAGELEDGGGGGGIPGRGTCVLLHQLRLW--PRVGSRGLVDGLLAC-----------LDPLSVTPDVLDYRHAWHLQAVARAL--GXXXXXXXXXXXXXXXEAVADSLCFQLLAASEACGFHDGDADDGQHVLLWPFAVFVALNNGDAERRNRAACELVMRYGHGLAGARAGTAGGHAWSFLVEELGVPQAWMDEAAAVRAAYEG 2351
MGR RV WGP L V R+ P A + A + VK L VT + GG E A H + R G R A D D + +VDC+ A LA E+ + D Q+W L NA+WGQE P LPL+G+ P G RR A+ WL+ + + R + G + VLDL+ HR+ +AA L L ++P + AL Y LLSG G A E S EG P+ LDW+R+LG LW++ R A G + R ++ A++A E+ + E G G R W RVG L LL LDP +T + DYR +W + + AL G V SL FQL+ LWP+AV+V L+ + R A +L+ R+G A G WSFLV+ELGVP AW+++A A +G
Sbjct: 1294 MGRSFRVGWGPAGSLAAP-----FVGRV-VRPGMAAKVEAQVLVKPLAVTPEEAGTK--GGVEGLRGYLGPLAVHKAFARSVEPASETRAPRAGFRAGGSPATGDVDVGLYH---HMVDCLHA---LATEATRRE----DDASRQTWELFNALWGQEGGGKARP---LPLSGSLGALCQVLLPDGASHNDWE----RRCQAVCRWLKRI----VRREVEDLPVRGSGDESADLRAVLDLMKSHRITDAASLASKSGFLRLATLIPLAGHKP---------------------ATDYLRQQPALRRNVQDPALAAIYGLLSGTGS-----EANETSDEG-----PKGGLDWMRRLGEYLWFKTDGRSPGA-----------GSAGAGDDDTDRLIL------AIEAFNEEMPSPPLPAWLRARWERGRG----------------RAWHNARVGPNSLFYDLLQMYRSEAYPLSLVLDPRGLTENERDYRLSWLMLTLLDALSIGHPTGPEAVEAATQIWMRVTSSLVFQLVGMG-----------------LWPWAVYVLLHAPETPARTGAVKDLIGRFGW------ASLQGNTDWSFLVDELGVPAAWLEDARATYLRAQG 1800
BLAST of mRNA_S-ischiensis_contig1.1175.1 vs. uniprot
Match: W7UBK1_9STRA (Nuclear pore complex protein nup98-nup96 isoform 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBK1_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.900e-14 Identity = 156/623 (25.04%), Postives = 212/623 (34.03%), Query Frame = -2
Query: 597 MGRGARVSWGPGALLVHTGQDGVHVVRIHATPSRADQTPADLYVKALDVTRRHSVVTEWGGGEAPHWGL-----------------PQRTAVKGDRRRRGDADADADQAAHDACATLVDCMQAHAQLARESGGSDPGGPDWIVEQSWNLANAMWGQEELRDEAPALVLPLAGTTEE------PTGXXXXXXXXRQARRRAALGAWLEAVADACLPRASPGVDEGRPGKSAPTWERVLDLLTVHRVEEAAEAXXXXXXXXLXXXXXXXXXXXWXXXXXXXXXXXXXXXRSMLVKQCQLWREPDGKPPCMPAALLRAYVLLSGHGFGDLALTAGEESGEGAGAWSPRPSLDWLRQLGLCLWYEERCRGRDAVPEAVRLFEDFARKGGANLPVARYLVEPTHFPAVDAARRELELAYMGGRTAGELEDGGGGGGIPGRGTCVLLHQLRLW--PRVGSRGLVDGLLAC-----------LDPLSVTPDVLDYRHAWHLQAVARAL--GXXXXXXXXXXXXXXXEAVADSLCFQLLAASEACGFHDGDADDGQHVLLWPFAVFVALNNGDAERRNRAACELVMRYGHGLAGARAGTAGGHAWSFLVEELGVPQAWMDEAAAVRAAYEG 2351
MGR RV WGP L V R+ P A + A + VK+L VT + GG E L R G R A D D + +VDC+ A LA E+ + D Q+W L NA+WGQE P LPL+G+ P G RR A+ WL+ + + R + G + VLDL+ HR+ +AA L L ++P + AL Y LLSG G A E S EG P+ LDW+R+LG +W++ R A G + R ++ A++A E+ + E G G R W RVG L LL LDP +T + DYR +W + + AL G V SL FQL+ LWP+AV+V L+ + R A +LV R+G G WSFLV+ELGVP AW+++A A +G
Sbjct: 391 MGRSFRVGWGPDGSLAAP-----FVGRV-VRPGMAAKVEAQVLVKSLAVTPEEAGTK--GGVEGLRGYLGPLGVHKAFARGVEPASETRAPRAGFRAGGSPATGDVDVGLYH---HMVDCLHA---LATEATRRE----DDASRQTWELFNALWGQEGGGKARP---LPLSGSLGALCQVLLPDGASHNDWE----RRCQAVCRWLKRI----VRREVEDLPVRGSGDESADLRAVLDLMKSHRITDAASLASKSGFLRLATLIPLAGHKP---------------------ATDYLRQQPALRRTVQDPALAAIYGLLSGTGS-----EANETSDEG-----PKAGLDWMRRLGEYMWFKTDGRSPGA-----------GSAGAGDDDTDRLIL------AIEAFDDEMPSPPLPAWLRARWERGRG----------------RAWHDARVGPNSLFYDLLQMYRSEAYPLSLVLDPRGLTENERDYRLSWLMLTLLGALSIGHPTGPEAVEAATQIWMRVTSSLVFQLVGMG-----------------LWPWAVYVLLHAPETPARTDAVKDLVGRFGWAF------QPGSTDWSFLVDELGVPAAWLEDARATYLRAQG 897
BLAST of mRNA_S-ischiensis_contig1.1175.1 vs. uniprot
Match: A0A7S3MBH2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBH2_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.610e-9 Identity = 114/508 (22.44%), Postives = 183/508 (36.02%), Query Frame = -2
Query: 603 VDCMQAHAQLARESGGSDPGGPDWIVEQSWNLANAMWGQEELRDEAPAL-----VLPLAGTTEEPTGXXXXXXXXRQARRRAALGAWLEAVADACLPRASPGVDEGRPGKSAPTWERVLDLLTVHRVEEAAEAXXXXXXXXLXXXXXXXXXXXWXXXXXXXXXXXXXXXRSMLVKQCQLWREPDGKPPCMPAALLRAYVLLSGHGFGDLALTAGEESGEGAGAWSPRPSLDWLRQLGLCLWYEERCRGRDAVPEAVRLFED-------FARKGGANLPVARYLVEP------THFP-AVDAARRELELAYMGGRTAGELEDGGGGGGIPGRGTCVLLHQLRLWPRVGSRGLVDGLLACLDPLSVTPDVLDYRHAWHLQAVARALGXXXXXXXXXXXXXXXEAVADSLCFQLLAASEACGFHDGDADDGQHVLLWPFAVFVALNNGDAERRNRAACELVMRYGHGL--AGARAGTAGGHAW----SFLVEELGVPQAWMDEAAAVRAAY 2051
+ QAHA R PDW V ++ L +A +GQE+ A A ++PL ++ RRR L W+E+V + + + D G+ G+SA T+ R+ +LL+ R+ +A L +++ Q +W+ + P L++ Y LL+G T E +G S L WLR +G+ WY C D+ E V + + PV+ YL + +P V LEL + T + L + L + + ++A + P T D LD+R ++ L + + G + FQLL+A LW +A+FVAL D R ++V+R+G + + GGHA+ +FL L VP+A + EA+A RA Y
Sbjct: 1025 IAAYQAHAPHHRH--------PDWTVGKALELIDATYGQEKTTFSADAATRAMELIPLYEDRQQYAPEIWE-------RRRTMLSCWIESVTSTQV-KQTDEADNGQFGQSAKTYNRMFELLSCRRLNDAVSLAEKAGMFRLATLLSQLDGDA--------------TIPTLIRNQLAMWKVSEADLTIAPE-LVKLYRLLAG--------TVITEDADGTTE-SSMLGLGWLRGIGVLFWY---CSSTDSFIENVSTLSSSLENYRIVLQDSVVDAPVSPYLQDKDAQGADVSYPNTVHGLYALLELLFPSAAA-----------------TNMDLGEAEL-----EMDIRNNVIAAVKPNGYTRDALDHRASFLLLVMLESAGISHINAAHACI------IRQHYIFQLLSAG-----------------LWQWALFVALQIPDLSARYCIVSDIVLRFGGECDWEEEKRASKGGHAYPSLYAFLTTALNVPEALLHEASAYRAGY 1444 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1175.1 >prot_S-ischiensis_contig1.1175.1 ID=prot_S-ischiensis_contig1.1175.1|Name=mRNA_S-ischiensis_contig1.1175.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=671bp MRAARDDTTGGQGQGLGADVVVGAVARVHQVPQPVQLWRGGIRSLRDGRQback to top mRNA from alignment at S-ischiensis_contig1:7952852..7955386+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1175.1 ID=mRNA_S-ischiensis_contig1.1175.1|Name=mRNA_S-ischiensis_contig1.1175.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2535bp|location=Sequence derived from alignment at S-ischiensis_contig1:7952852..7955386+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:7952852..7955386+ >mRNA_S-ischiensis_contig1.1175.1 ID=mRNA_S-ischiensis_contig1.1175.1|Name=mRNA_S-ischiensis_contig1.1175.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=4026bp|location=Sequence derived from alignment at S-ischiensis_contig1:7952852..7955386+ (Schizocladia ischiensis KU_0333)back to top |