mRNA_S-ischiensis_contig1.1173.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1173.1
Unique NamemRNA_S-ischiensis_contig1.1173.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: D8LQ55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ55_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 3.860e-115
Identity = 198/271 (73.06%), Postives = 221/271 (81.55%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGEKQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQEKGEEPEGXXXXXXXXXXXXXXXXXXXXAN-SAAIRAHVPVPSQEDIKEAILAKKKQALLLKIQSGTLDDDED 924
            MARNEEKAQ MMNKWTTMK+QMAK E+ RRPF++S+C NL DAE+WRRDIIRET+K V  IQNAG GEH++RD+NDQINKLLRER HWDKRILELGGPDYAANAPK+YDADGRELPG GGY YFGAAK LPGVRELF  S+ + PRRTRKDMY+ +TPDYYGYRDEEDG+LVAKE+ MEKRKV  AV EW+  KR R E GEE  G      XXXXXXXXXXXXXX   SA +RAHVPVPSQ+ IKEAIL +KK  LL +     LD +ED
Sbjct:    1 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETSKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRILELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKGLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVMEKRKVQSAVSEWQAEKRRRLEDGEEEAGGDADDEXXXXXXXXXXXXXXXXXSAEVRAHVPVPSQDAIKEAILKRKKLTLLKR-----LDGEED 266
[Close]
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: W7TA77_9STRA (Pre-mrna-splicing factor isy1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA77_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.590e-99
Identity = 185/272 (68.01%), Postives = 215/272 (79.04%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGEKQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQEKGEEPE-------------GXXXXXXXXXXXXXXXXXXXXANSAAIRAHVPVPSQEDIKEAILAKKKQALLLK 891
            MARNEEKAQAM+NKW TMKK +A G+K+RRPF++SDC  L++AE WRR II+E TKKVSE+QNAGLGEHR+RD+NDQINKLLRE+ HW KRI ELGGPDY    P+ YDADGRELPG GGY+YFGAAK+LPGV+ELFQ S  K+ RRTR DMYK + PDYYGYRDEEDGIL+ KE E EK  +A AV +++  KR R+EKGE  E              XXXXXXXXXXXXXXXXXXXX  SAA++AHVPVP QEDI  A++ KKK+ALL K
Sbjct:    1 MARNEEKAQAMLNKWLTMKKDLATGDKERRPFLSSDCHVLSEAERWRRQIIKEVTKKVSEVQNAGLGEHRLRDLNDQINKLLREKYHWQKRIKELGGPDYNRIEPRAYDADGRELPGGGGYRYFGAAKDLPGVKELFQKSAPKEMRRTRGDMYKGIDPDYYGYRDEEDGILLEKEREAEKEAIAAAVRQFK--KRAREEKGEGEETEXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAVKAHVPVPCQEDIMTALMEKKKRALLSK 270
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BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: A0A7S2S7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7Y0_9STRA)

HSP 1 Score: 275 bits (703), Expect = 3.460e-85
Identity = 147/276 (53.26%), Postives = 186/276 (67.39%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGE-KQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQE----KGEEP-----------EGXXXXXXXXXXXXXXXXXXXXANSAAIRAHVPVPSQEDIKEAILAKKKQALLLKI 894
            MARNEEKA +++NKW TMK + AKG   QRRP++A++C +L  AE WR D+I+E +K + EIQNAGLGEHR+RD+NDQINKLLRE+ HW KRI ELGGPDY A  P+++DADGRELPG GGYKYFGAAKELPGVRELFQA   ++PRRTR  +YK +TPDYYGYRDE+D  L+ KE+  EK  + EA  + +  KR R       GE             +                     A+S   +AHVPVPSQ+++K+AIL  +KQ LL ++
Sbjct:    1 MARNEEKAMSLLNKWVTMKSEFAKGGGPQRRPYLATECDDLRQAERWRLDVIKEVSKGIGEIQNAGLGEHRIRDLNDQINKLLREKFHWQKRIRELGGPDYNAIEPRSFDADGRELPGGGGYKYFGAAKELPGVRELFQAEAPQRPRRTRAQIYKTITPDYYGYRDEDDEDLLRKEALAEKEAIEEADAQHQRLKRQRXXXXXXNGEXXXXXXXXXXXXDDAAAMAAAAHSNFGEAMARASAASSTVAKAHVPVPSQDEVKQAILDHRKQQLLQQL 276
[Close]
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: UPI000C03B492 (pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Astrocoeniina TaxID=123757 RepID=UPI000C03B492)

HSP 1 Score: 259 bits (661), Expect = 5.050e-79
Identity = 136/270 (50.37%), Postives = 179/270 (66.30%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTM-KKQMAKGEKQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKR----VRQEKGEEPEGXXXXXXXXXXXXXXXXXXXXANSAAIRAHVPVPSQEDIKEAILAKKKQALLLKIQSGTL 909
            MARN EKA  M+ +W  + +K+  KG K+RRPF+A++C NL +AE WR+ IIRE  KKV++IQNAGLGE R+RD+ND+INKLLRE+ HW+ RI ELGGPDYA   PK  D +G+E+PG+ GYKYFGAAK+LPGVRELF+      PR+TR ++YK V  DYYGYRDE+DG+LV  E E+EK  +A A++EW   K     V ++  EE                         +    AHVPVPSQ++++E ++ +KK  LL K  S TL
Sbjct:    1 MARNAEKAMTMLARWYDLQRKEAGKGIKERRPFLATECDNLQEAEKWRQQIIREVAKKVAQIQNAGLGEFRIRDLNDEINKLLREKRHWEDRIKELGGPDYAKIGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEQEPPAPPRKTRGELYKDVDADYYGYRDEDDGVLVPLEQEVEKEAIARALDEWERKKEAGELVTEQDQEEENIYAVTKEQEESDEDMETDQTEEGNQPFVAHVPVPSQKEVEEMLVQRKKMELLEKYASETL 270
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BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: A0A6P4ZB62_BRABE (pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZB62_BRABE)

HSP 1 Score: 253 bits (646), Expect = 7.580e-77
Identity = 147/268 (54.85%), Postives = 183/268 (68.28%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGE-KQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQEKGEEPEGXXXXXXXXXXXXXXXXXXXXANSAAIR--AHVPVPSQEDIKEAILAKKKQALLLKIQSGTL 909
            MARN EKA   + +W  M  QM +G+ K+RRPF+AS+  +L  AE WR  IIRE  KKVS+IQNAGLGE R+RD+ND+INKLLRE+ HW++RI ELGGPDY    PK  D +G+E+PG+ GYKYFGAAK+LPGVRELF+      PRRTR ++YK V  DYYGYRDE+DG+LV  E ++EK  VAEAV EW+  K     K  E E      XXXXXXXX             +  AHVPVPSQ++++EA+L +KK  LL K  S +L
Sbjct:    1 MARNAEKAMTTLARWRNM--QMDQGKVKERRPFLASEENDLGKAEKWRHQIIREVAKKVSQIQNAGLGEFRIRDLNDEINKLLREKKHWEERIKELGGPDYERVGPKMLDQEGKEVPGNRGYKYFGAAKDLPGVRELFEQEPPAPPRRTRAELYKEVDADYYGYRDEDDGVLVPLEQDLEKEVVAEAVAEWKSQKEAGLLKDVEEEEDIYAVXXXXXXXXTGESKMETEEGQQQFIAHVPVPSQKEVEEALLRRKKMELLQKYASDSL 266
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BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: A0A6S7I131_PARCT (Pre-mRNA-splicing factor ISY1 homolog n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7I131_PARCT)

HSP 1 Score: 253 bits (645), Expect = 9.690e-77
Identity = 133/273 (48.72%), Postives = 181/273 (66.30%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGEKQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQEKGEEPEGXXXXXXXXXXXXXXXXXXXXANSAAIR--AHVPVPSQEDIKEAILAKKKQALLLKIQSGTLDDDEDD 927
            MARN EKA AMM++WT M+K+  K  K+RRP++A++C++L+ AE WRR II E +KKV++IQNAGLGE R+RD+ND+INKLLRE+ HW+ RILELGGPDY    PK  D +G+E+PG+ GYKYFGAAK+LPGVRELF+      PR+TR ++ K +  DYYGYRDE+DG+LV  E + +K  +A+A+E++ + K      GE PE                          +   +HVPVPSQE+++  ++ +KK  LL K  S TL     D
Sbjct:    1 MARNAEKAMAMMSRWTAMQKEEGK-VKERRPYLATECSDLSKAEKWRRQIIGEVSKKVAQIQNAGLGEFRIRDLNDEINKLLREKRHWEDRILELGGPDYKRIGPKMLDREGKEVPGNRGYKYFGAAKDLPGVRELFEQEPPAPPRKTRGELMKKIDADYYGYRDEDDGVLVPLEKDAQKEALAQALEDYEKRKAA----GEIPEVEEEEDIYATATETVDSDEDNEEQDEVNFVSHVPVPSQEEVEALLVQRKKMELLEKYASETLMQQSQD 268
[Close]
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: A7RT52_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RT52_NEMVE)

HSP 1 Score: 251 bits (642), Expect = 3.280e-76
Identity = 131/269 (48.70%), Postives = 177/269 (65.80%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKW-TTMKKQMAKGEKQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQEKGEEPEGXXXXXXXXXXXXXXXXXXXXANSA---AIRAHVPVPSQEDIKEAILAKKKQALLLKIQSGTL 909
            MARN EKA  M+++W    +K+  KG K+RRPF+A++C NL +AE WR  IIRE  KKV++IQNAGLGE R+RD+ND+INKLLRE+ HW+ RI ELGGPDY    PK  D +G+E+PG+ GYKYFGAAKELPGVRELF+      PR+TR ++YK +  DYYGYRDE+DG+LV  E E E+  ++ A++EW+  K   Q + E+                         +    +  AHVPVPSQ++++E ++ +KK+ LL K  S  L
Sbjct:    1 MARNAEKAMTMLSRWYDVQRKEAGKGIKERRPFLATECDNLQEAEKWRHQIIREVAKKVAQIQNAGLGEFRIRDLNDEINKLLREKRHWEDRIKELGGPDYGKIGPKMLDHEGKEVPGNRGYKYFGAAKELPGVRELFEQEPPAPPRKTRGELYKDIDADYYGYRDEDDGVLVPIEQEAEEEAISRAMDEWKRKKEEGQVELEDXXXEDIYAVKPGPEGDDEDMDTEEGAEKEQSFVAHVPVPSQKEVEELLVQRKKRELLDKYASEAL 269
[Close]
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: A0A401Q119_SCYTO (Uncharacterized protein n=10 Tax=Chondrichthyes TaxID=7777 RepID=A0A401Q119_SCYTO)

HSP 1 Score: 250 bits (638), Expect = 1.330e-75
Identity = 136/278 (48.92%), Postives = 179/278 (64.39%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGE-KQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQEKGEEPE------GXXXXXXXXXXXXXXXXXXXXANSAAIRAHVPVPSQEDIKEAILAKKKQALLLKIQSGTLDDDEDD 927
            MARN EKA   + ++     Q+  G+ K+RRPF+AS+C +L  AE WRR II E +KKV++IQNAGLGE R+RD+ND+INKLLRE+ HW+ RI ELGGPDY    PK  D +G+E+PG+ GYKYFGAAK+LPGVRELF+      PR+TR ++ K +  DYYGYRDE+DG+L+  E E+EK+ + EAVE+W+E K  R E G + E                            N     AHVPVPSQ++I+EA++ +KK  LL K  S TL    +D
Sbjct:    1 MARNAEKAMTALARFRQA--QLEDGKVKERRPFLASECNDLHKAEKWRRQIISEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGRIGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPPAPPRKTRAELMKDIDADYYGYRDEDDGVLLPLEQELEKQVILEAVEKWKEDKEARLESGGDKEEXXXXVNIYAVKDDESDDEGEEQTEGEENEQKFIAHVPVPSQKEIEEALVRRKKMELLQKYASETLMAQSED 276
[Close]
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: A0A6P8PEH7_GEOSA (pre-mRNA-splicing factor ISY1 homolog n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8PEH7_GEOSA)

HSP 1 Score: 249 bits (636), Expect = 2.400e-75
Identity = 140/269 (52.04%), Postives = 180/269 (66.91%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGE-KQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKR---VRQEKGEEPEGXXXXXXXXXXXXXXXXXXXXANSAAIRAHVPVPSQEDIKEAILAKKKQALLLKIQSGTL 909
            MARN EKA   + ++     Q+  G+ K+RRPF+AS+C  L  AE WRR II E +KKV++IQNAGLGE R+RD+ND+INKLLRE+ HW+ RI ELGGPDYA   PK  D +G+E+PG+ GYKYFGAAK+LPGVRELF+      PR+TR ++ K +  +YYGYRDE+DG+LV  E E EK+ +AEAVE+W+  K     R EK EE +                XXXX        AHVPVPSQ++I+EA++ +KK  LL K  S TL
Sbjct:    1 MARNAEKAMTALARFRQA--QLEDGKVKERRPFLASECNELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYARIGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPVPPPRKTRAELMKDIDAEYYGYRDEDDGVLVPLEQEYEKKVIAEAVEKWKAEKENHLARGEKAEEDDINIYAVNDKESDDEDDXXXXDEGQQTFIAHVPVPSQQEIEEALVRRKKMELLQKYASETL 267
[Close]
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Match: A0A6P7Y335_9AMPH (pre-mRNA-splicing factor ISY1 homolog n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A6P7Y335_9AMPH)

HSP 1 Score: 247 bits (630), Expect = 1.870e-74
Identity = 140/269 (52.04%), Postives = 182/269 (67.66%), Query Frame = 1 
Query:  115 MARNEEKAQAMMNKWTTMKKQMAKGE-KQRRPFIASDCTNLADAEVWRRDIIRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDYAANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRKDMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEW---RETKRVRQEKGEEPEGXXXXXXXXXXXXXXXXXXXXANSAAIRAHVPVPSQEDIKEAILAKKKQALLLKIQSGTL 909
            MARN EKA   + ++     Q+  G+ K+RRPF+AS+C  L  AE WRR II E +KKV++IQNAGLGE ++RD+ND+INKLLRE+ HW+ RI ELGGPDYA   PK  D +G+E+PG+ GYKYFGAAK+LPGVRELF+      PR+TR ++ K +  +YYGYRDE+DG+LV  E E EK+ +AEAV++W   RE +  R EK EE +                XXXXX       AHVPVPSQ++I+EA++ +KK  LL K  S TL
Sbjct:    1 MARNAEKAMTALARFRQA--QLEDGKVKERRPFLASECNELPKAEKWRRQIIGEISKKVAQIQNAGLGEFKIRDLNDEINKLLREKGHWEVRIKELGGPDYARIGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPVPPPRKTRAELMKDIDAEYYGYRDEDDGVLVPLEQEYEKQVIAEAVKKWKAERENQLARGEKVEEEDVNIYAVNDKESDDEGDXXXXXXGQQTFIAHVPVPSQQEIEEALVRRKKMELLQKYASETL 267
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ55_ECTSI3.860e-11573.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TA77_9STRA1.590e-9968.01Pre-mrna-splicing factor isy1 n=1 Tax=Nannochlorop... [more]
A0A7S2S7Y0_9STRA3.460e-8553.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI000C03B4925.050e-7950.37pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Astr... [more]
A0A6P4ZB62_BRABE7.580e-7754.85pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Bran... [more]
A0A6S7I131_PARCT9.690e-7748.72Pre-mRNA-splicing factor ISY1 homolog n=2 Tax=Alcy... [more]
A7RT52_NEMVE3.280e-7648.70Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A401Q119_SCYTO1.330e-7548.92Uncharacterized protein n=10 Tax=Chondrichthyes Ta... [more]
A0A6P8PEH7_GEOSA2.400e-7552.04pre-mRNA-splicing factor ISY1 homolog n=2 Tax=Gymn... [more]
A0A6P7Y335_9AMPH1.870e-7452.04pre-mRNA-splicing factor ISY1 homolog n=2 Tax=Eute... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7925557..7929875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score349.7
Seed ortholog evalue1.2e-93
Seed eggNOG ortholog2880.D8LQ55
Preferred nameISY1
KEGG koko:K10352,ko:K12870
KEGG Pathwayko03040,ko04530,map03040,map04530
KEGG ModuleM00355
GOsGO:0000245,GO:0000350,GO:0000375,GO:0000377,GO:0000389,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0071008,GO:0071012,GO:0071013,GO:0071014,GO:0071020,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for second transesterification step
EggNOG OGsKOG3068@1,KOG3068@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIsy1-like splicing
Ec32 orthologEc-26_006080.1
Exons3
Model size1661
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1173.1prot_S-ischiensis_contig1.1173.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7926288..7929761 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.2993639-UTR-S-ischiensis_contig1:7925556..79262871622815488.2993639-UTR-S-ischiensis_contig1:7925556..7926287Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7925557..7926287 -
1695739730.3603244-UTR-S-ischiensis_contig1:7925556..79262871695739730.3603244-UTR-S-ischiensis_contig1:7925556..7926287Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7925557..7926287 -
1622815488.3630452-UTR-S-ischiensis_contig1:7929761..79298751622815488.3630452-UTR-S-ischiensis_contig1:7929761..7929875Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7929762..7929875 -
1695739730.4026506-UTR-S-ischiensis_contig1:7929761..79298751695739730.4026506-UTR-S-ischiensis_contig1:7929761..7929875Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7929762..7929875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.312313-CDS-S-ischiensis_contig1:7926287..79264521622815488.312313-CDS-S-ischiensis_contig1:7926287..7926452Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7926288..7926452 -
1695739730.3713794-CDS-S-ischiensis_contig1:7926287..79264521695739730.3713794-CDS-S-ischiensis_contig1:7926287..7926452Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7926288..7926452 -
1622815488.328148-CDS-S-ischiensis_contig1:7927971..79281311622815488.328148-CDS-S-ischiensis_contig1:7927971..7928131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7927972..7928131 -
1695739730.3798015-CDS-S-ischiensis_contig1:7927971..79281311695739730.3798015-CDS-S-ischiensis_contig1:7927971..7928131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7927972..7928131 -
1622815488.3486612-CDS-S-ischiensis_contig1:7929270..79297611622815488.3486612-CDS-S-ischiensis_contig1:7929270..7929761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7929271..7929761 -
1695739730.3884242-CDS-S-ischiensis_contig1:7929270..79297611695739730.3884242-CDS-S-ischiensis_contig1:7929270..7929761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7929271..7929761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1173.1

>prot_S-ischiensis_contig1.1173.1 ID=prot_S-ischiensis_contig1.1173.1|Name=mRNA_S-ischiensis_contig1.1173.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=272bp
MARNEEKAQAMMNKWTTMKKQMAKGEKQRRPFIASDCTNLADAEVWRRDI
IRETTKKVSEIQNAGLGEHRVRDINDQINKLLRERAHWDKRILELGGPDY
AANAPKTYDADGRELPGSGGYKYFGAAKELPGVRELFQASEAKKPRRTRK
DMYKLVTPDYYGYRDEEDGILVAKESEMEKRKVAEAVEEWRETKRVRQEK
GEEPEGGGDNEEDEDVQGAAEEASSAANSAAIRAHVPVPSQEDIKEAILA
KKKQALLLKIQSGTLDDDEDD*
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mRNA from alignment at S-ischiensis_contig1:7925557..7929875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1173.1 ID=mRNA_S-ischiensis_contig1.1173.1|Name=mRNA_S-ischiensis_contig1.1173.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4319bp|location=Sequence derived from alignment at S-ischiensis_contig1:7925557..7929875- (Schizocladia ischiensis KU_0333)
TTGGAGCTATCAACACCGTACGGACCAGGCGACACACCCCGCTCTCGCCC
CCTCACAGCTTCCCCTTGTTGAGAATACCACGCTTTTCGGGCCTGCACCC
CCCCGACCGCGACCATGGCTCGTAATGAGGAGAAAGCGCAGGCCATGATG
AACAAATGGACGACCATGAAGAAGCAGATGGCCAAGGGCGAGAAGCAACG
AAGACCATTCATCGCGTCAGATTGCACCAACCTCGCGGACGCGGAGGTGT
GGCGGCGGGACATTATTCGAGAGACGACCAAGAAGGTGTCCGAGATCCAG
AACGCGGGGTTGGGCGAGCACCGCGTTCGAGACATCAATGACCAGATCAA
CAAGCTCCTGCGGGAGCGGGCGCACTGGGACAAGCGCATACTCGAGCTAG
GGGGTCCAGACTACGCAGCAAATGCCCCAAAGACGTACGACGCGGACGGG
CGCGAGCTGCCGGGGAGCGGGGGGTACAAGTACTTTGGCGCAGCCAAGGA
ATTGCCTGGGGTTCGAGAGCTGTTTCAGGCTTCGGAAGCAAAGAAACCAA
GGCGAACACGAAAGGATATGTACAAGCTTGTCACGCCAGACTACTACGGC
TACAGGTGAGCCAGTGGGTGACTCGGGAAAAGAGTCCCCCGACTTCCGCA
ACTGTTTGGGGGCGGTGGATTGAGGGAATGGCCATGGATTTTGGCCGAGA
GCATGGTTGGCTACTTCACCAGGCGAGCAATACATTTTTAGTTAGTTTTG
CGCTTCAGGCGCTATGTAACAAAATATAATGCATTGCAAGTGGAACAGTG
CAGTACTTTGGTGACGGGGTTCCTCACAAGGCAACAAGTCCGCCGAGTTT
GATGTGTGTGCTTGGATGCTGCCTTGCACGATCCGCTCTGGGTACAGCAC
TGGTGGTAATCGTTTGGAGGCCGGTTCCAGATGTCCAGGGCACTACGCGA
GATGTTGTTATATCGCGCTCACTTAAGCTAGGCAAATCGCGGTGCTCCCT
GCCTGTCTCTCACGGACGCGGGTGAGCAACACTGCCGCAGGCAAGCAAAG
TTTGTGGGGGTTGCACACAGCACACCGCGCTACAGTCGCCACAAACGTGC
TCGGGAGCATGTTCACCCGCAGAAACGCTGCATGGAGCTGGTCATAATAG
AGCACCGTTTGAGAAAAGTGGGCTTTGATTTCCCCAACACTTGGGATGTG
TTATAGTGTCCTTCAACTACACCAAGCACCACGTGTCTGCTGCACTGTAC
ATGAACGGTAGCTGATATTTCAAGTCCAGTTTTTGCTTGGGACTACTGTC
CTGCTGTTGGGTGTCCCCGTGCGGGGGGCGACGCCCTCACAGACGGGGGG
CTGCCCTCACCGAGTCTGGCCCAAGCCGAAACCATGACAGTAGTATTCGT
GAGAGCCACGTGGTCAGTGGTCGCCGGGCTAAGACAAGCTCTGTTGGGTG
GGAGTATACCCTGCACTCAAGTACGTAGTTGAGCAAAAAGGTGCTGTACA
TTGCAAGGAAACATTGCCCCTTGCAACTACTGTAGAGTACGTGAAATGAC
AAGCACTTGACATGTAGAGTATACTTCGAAGTGCTTAGTACTGTACATAC
TTCTGTACAAGTACTGGCAAGAAAAAGAGCGTGGCGTGCTCAGGACCAGC
CTCTCCCCGGACGTTGGAAGCCCGTACGCGGTTTTGTCAAACATTGGTTT
ACCCACTACATTACACTGCTCTGTCGTTTGCCCGGCCGACACAGGGACGA
GGAAGATGGCATCCTGGTTGCCAAAGAGAGTGAGATGGAGAAGCGCAAGG
TCGCGGAGGCGGTGGAGGAATGGAGGGAGACCAAGAGGGTGCGGCAGGAG
AAGGGAGAGGAGCCAGAAGGCGGGGGGGACAACGAGGAGGACGAAGATGT
TCAGGTGAGCTTGCTCTTGCTGGGGGGGGCGCTGACAAGTAGCACTTGTA
CTACCGTAGTACTACGAGGCGTTTGGTCAATGGTCTTGGGACTATGGCAA
GCACCACGTGAGTACATATATATATAGTGGTCTAGAGACTACGGCAAGCA
CCATGTGAGTACATATATATATATATATATATGTACGGCAAGCACCACGT
GAGTGTACATGTATATATATTTATATAGTTATGTATATATGTACTCACGT
GGTGCTTGCCGTAGTCCCAAGACCGTTGACCACGCGCCTTATATATACTA
CTAAGTACTGCGAGTCAAGTTGAAGTGCACTGTCCGCAGTATAATGTATG
TGCAAGTACTTGACATACGTTGTGCTGCCGCACTTAGCCCAGGGACCGCA
GCAAGCGGTTGCATCGTGTTTCTTGGCGTGTTTCCTCTGTGCACGGCCAG
CGGTGGTGGCCGGAGGCCATGTGACATCTGGGTTGGAGCGAAGTGCACGT
CGCGAGACAAGCCGGGGTTCGACCAGGGTTCACCCCTAACGGACATATAC
TAGTAGCCATTCACCTCAGTGTCGATTTCTTCAATGACCGGCTAGTTCCT
GCCCGTCATACTTTGAAGTACTGCCACAGAATATGCTTTGTGTACGGTGT
GTCGCGTGAAATGATTGCATGCCTCGACCGCGTACAAGTATGCTCGTTGA
CGTGCGACCGGTGTCATGCCTTTGCCCGCCCTCAGACAGGCACTCTTGCG
TCGTTCAATTGCCACTTGGGAGTAATTTCGATTATGTATGATACCTACTT
CCAAGCTCAGTTGCCGGTTGCCGGCCATGTGCTGCAGACAGCCCCCCTTC
CCCATACATGTACAAGTGCTGCAGTGCCCCCCCCTGACGCACAAGCACCT
CTCTCTCACGGCCCATTATGCTGCGGCCTGGGATTCCAAGGCATGCGTCT
CCATTCATGGGCAACATGAAAGACAGGACAGTGACAACCGTGATACTTTA
CTCCTAAGTACCAAGTGCTGTCTGCACAGCACCATACGCCAAGCCCCGTG
CACAGCCTGCCAAAATAGTTCATACTTTCCAAGTACTTCGAAATATGTGT
ACAGTAGCTACCTACTGTATATACTACGTATATATATATATGTACTCACG
TCGTGCTTGCCGTAGTCTGGAGACCATGGACCCCAATTAGTATACACTTA
TATACTACGAAGTATGTACTTCAAGTACAAGTATTTTACCCGGGTACTTG
GGAGTGCTTTGGGACTACGGCAAGCACAATGGGAGTGCATGTTCACTACA
GTAGTTCGGAAACAGATGGCTGCGAGAAGTATGTACTGTAGGTAATCCTA
CTTGTACTAGCAGTGCTTCCAAGTAGAAAATGAGTCGGAGTACTCTACTG
TACACAGGGTATCCCGTAACCTCCACGCCCCTCAGCAAGCTCACCCTCCG
GTTCGCTGACTCTTTGCACTTTGCTTCCCCCCCTACCGCCACCTGGCCCC
GGATTTCACCGGTGCACTACCAGGGGGCAGCCGAGGAGGCATCGTCGGCG
GCGAATTCGGCGGCCATCCGTGCGCACGTGCCAGTCCCGTCACAGGAGGA
CATCAAGGAGGCCATCCTGGCCAAGAAAAAGCAGGCCCTGCTGCTCAAGA
TACAGTCTGGGACACTGGACGACGACGAGGACGACTGACCGCTGGCCGGG
CGAATAGGCTACAGGACCCATCATGGTGCCATCAGGCTATTTCGCCGCCC
TCCTCCTCCCCCTCCCCCTTCCCCTCCTCCCCCGTGCTGCTGCGGTTCTG
TGGTGGCGGGCCAGCATGCAGCGGTGCATCACGGTGCTTGCTCTCCTTGG
GCGGGGAGAGTCTGCTGAGGCCTGGCACCAGAACACATGCCTGGGGACGT
TTAACCGCACCAAGGCCGGGGTGCGATAGATGGCGAACGGAAGTGTGTGC
AGCTTACTTGGGCGTAGAGAGCAACGCTGCTGTTGGGTGTGGGGAACCTG
AGCAGCTGTTGAGTATTTTTCAGATCCGTGGATGGGGCGGGCGCTGGGCT
ATGGGCTGTGCCAGTTGTCAGCGGTGCTTGCCATGGTGACCGTTCTGGCA
CCTCGAAGACCAGCCTGACCCAGGCGTGCATCAGGAAAAAATTGGCGTTG
TACTGACCGAGGGCAAGTCCCTGAGCGGCTCTGATACAGCGTTCGCGTTT
GCATGTGCTCACGCCTACAGTAGGTAGTTAGGTGCCGCGTGGCCTGCATC
GTGACCTGGAGTACCGCCCCGAAGTGTTGCCATAGTGCAAGCACTTGTAG
TAGATACCAGCTTTGTACATCGGACTCACAAAAGTCACCCGTGCCGTGAC
AGTCATGGTCCGGTGAGAAGTGTGACCCGACAGCAGGACAATCTCAGATC
AACCATGTTTTTTGAGATC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7925557..7929875-

>mRNA_S-ischiensis_contig1.1173.1 ID=mRNA_S-ischiensis_contig1.1173.1|Name=mRNA_S-ischiensis_contig1.1173.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1632bp|location=Sequence derived from alignment at S-ischiensis_contig1:7925557..7929875- (Schizocladia ischiensis KU_0333)
ATGGCTCGTAATGAGGAGAAAGCGCAGGCCATGATGAACAAATGGACGAC
CATGAAGAAGCAGATGGCCAAGGGCGAGAAGCAACGAAGACCATTCATCG
CGTCAGATTGCACCAACCTCGCGGACGCGGAGGTGTGGCGGCGGGACATT
ATTCGAGAGACGACCAAGAAGGTGTCCGAGATCCAGAACGCGGGGTTGGG
CGAGCACCGCGTTCGAGACATCAATGACCAGATCAACAAGCTCCTGCGGG
AGCGGGCGCACTGGGACAAGCGCATACTCGAGCTAGGGGGTCCAGACTAC
GCAGCAAATGCCCCAAAGACGTACGACGCGGACGGGCGCGAGCTGCCGGG
GAGCGGGGGGTACAAGTACTTTGGCGCAGCCAAGGAATTGCCTGGGGTTC
GAGAGCTGTTTCAGGCTTCGGAAGCAAAGAAACCAAGGCGAACACGAAAG
GATATGTACAAGCTTGTCACGCCAGACTACTACGGCTACAGATGGCTCGT
AATGAGGAGAAAGCGCAGGCCATGATGAACAAATGGACGACCATGAAGAA
GCAGATGGCCAAGGGCGAGAAGCAACGAAGACCATTCATCGCGTCAGATT
GCACCAACCTCGCGGACGCGGAGGTGTGGCGGCGGGACATTATTCGAGAG
ACGACCAAGAAGGTGTCCGAGATCCAGAACGCGGGGTTGGGCGAGCACCG
CGTTCGAGACATCAATGACCAGATCAACAAGCTCCTGCGGGAGCGGGCGC
ACTGGGACAAGCGCATACTCGAGCTAGGGGGTCCAGACTACGCAGCAAAT
GCCCCAAAGACGTACGACGCGGACGGGCGCGAGCTGCCGGGGAGCGGGGG
GTACAAGTACTTTGGCGCAGCCAAGGAATTGCCTGGGGTTCGAGAGCTGT
TTCAGGCTTCGGAAGCAAAGAAACCAAGGCGAACACGAAAGGATATGTAC
AAGCTTGTCACGCCAGACTACTACGGCTACAGGGACGAGGAAGATGGCAT
CCTGGTTGCCAAAGAGAGTGAGATGGAGAAGCGCAAGGTCGCGGAGGCGG
TGGAGGAATGGAGGGAGACCAAGAGGGTGCGGCAGGAGAAGGGAGAGGAG
CCAGAAGGCGGGGGGGACAACGAGGAGGACGAAGATGTTCAGGGACGAGG
AAGATGGCATCCTGGTTGCCAAAGAGAGTGAGATGGAGAAGCGCAAGGTC
GCGGAGGCGGTGGAGGAATGGAGGGAGACCAAGAGGGTGCGGCAGGAGAA
GGGAGAGGAGCCAGAAGGCGGGGGGGACAACGAGGAGGACGAAGATGTTC
AGGGGGCAGCCGAGGAGGCATCGTCGGCGGCGAATTCGGCGGCCATCCGT
GCGCACGTGCCAGTCCCGTCACAGGAGGACATCAAGGAGGCCATCCTGGC
CAAGAAAAAGCAGGCCCTGCTGCTCAAGATACAGTCTGGGACACTGGACG
ACGACGAGGACGACTGAGGGGCAGCCGAGGAGGCATCGTCGGCGGCGAAT
TCGGCGGCCATCCGTGCGCACGTGCCAGTCCCGTCACAGGAGGACATCAA
GGAGGCCATCCTGGCCAAGAAAAAGCAGGCCCTGCTGCTCAAGATACAGT
CTGGGACACTGGACGACGACGAGGACGACTGA
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