mRNA_S-ischiensis_contig1.1166.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1166.1
Unique NamemRNA_S-ischiensis_contig1.1166.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7888133..7889011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.8942504-CDS-S-ischiensis_contig1:7888132..78884291622815360.8942504-CDS-S-ischiensis_contig1:7888132..7888429Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7888133..7888429 -
1695739659.741372-CDS-S-ischiensis_contig1:7888132..78884291695739659.741372-CDS-S-ischiensis_contig1:7888132..7888429Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7888133..7888429 -
1622815360.9078808-CDS-S-ischiensis_contig1:7888948..78890111622815360.9078808-CDS-S-ischiensis_contig1:7888948..7889011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7888949..7889011 -
1695739659.749902-CDS-S-ischiensis_contig1:7888948..78890111695739659.749902-CDS-S-ischiensis_contig1:7888948..7889011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7888949..7889011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1166.1prot_S-ischiensis_contig1.1166.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7888133..7889011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1166.1

>prot_S-ischiensis_contig1.1166.1 ID=prot_S-ischiensis_contig1.1166.1|Name=mRNA_S-ischiensis_contig1.1166.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
GERWRAEALQLRAKVEELRDEATELRAQGGMAAAVDAREYAEALHAELAA
LERLNQALTARLAASRSAAAHTVDVAAAARAWLEAAATGEGAGGGLGPAA
AAAAAAAAVAAAGGGGRDAW
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mRNA from alignment at S-ischiensis_contig1:7888133..7889011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1166.1 ID=mRNA_S-ischiensis_contig1.1166.1|Name=mRNA_S-ischiensis_contig1.1166.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=879bp|location=Sequence derived from alignment at S-ischiensis_contig1:7888133..7889011- (Schizocladia ischiensis KU_0333)
GGGGAGCGGTGGAGGGCGGAGGCGCTGCAGTTGCGCGCGAAGGTGGAGGA
GCTGAGGGATGAGGCGAGTTGTTTCTGACTTAAAAGGAAGTGAGCATGTC
AAGTGCTTTATATACCTTTACTAACGTACTGCTATATTTGTTCACATGGA
ACAGAGATTGCCGCAGTCCTGAGAACGTTGACCGCACGCCTCTTCGGAGG
ACAGATGGAGCAATCCCCCTCCCCACCCAGGGTTACGGGGATTACAGTCC
TCCGCCCGATGGTGGCGGGCCAGGTCGGTACGATCGCAAGCCCAAGCATG
AGTGCCCACCATACCTACACATTACACATGTAGAGTAATTCCAAGTCCGC
GTACTTCCGGAAGTACATGTGCAAAACACAACCACACACACACACACAGC
CAGCCAGGCCACAACCTCCCATGGGGGCACCGCTTGCACATCTCACATGC
CCGCGCCTGCCACCACCTCTCATCTCGCCCATGCCCACCAACCCCCAGCT
GCTCTCCCCGCCCCTCATGTACGCCCCCTTCCCCCTCCCCTCGCCCCCCC
CGCCTGGGCCGGGCCTTGACTGTCCACTGCAGGCAACGGAACTGCGTGCT
CAGGGTGGCATGGCCGCGGCCGTAGACGCACGAGAGTACGCCGAAGCCCT
GCACGCCGAACTGGCGGCGCTGGAACGCCTAAACCAAGCCCTCACCGCCC
GCCTGGCCGCTTCCCGGAGCGCTGCCGCCCACACCGTCGACGTCGCCGCT
GCTGCCCGGGCCTGGCTCGAGGCCGCCGCCACCGGGGAGGGGGCAGGCGG
GGGGCTCGGGCCAGCGGCGGCTGCGGCGGCAGCGGCGGCAGCGGTGGCAG
CGGCTGGCGGGGGGGGGCGGGATGCGTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7888133..7889011-

>mRNA_S-ischiensis_contig1.1166.1 ID=mRNA_S-ischiensis_contig1.1166.1|Name=mRNA_S-ischiensis_contig1.1166.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig1:7888133..7889011- (Schizocladia ischiensis KU_0333)
GGGGAGCGGTGGAGGGCGGAGGCGCTGCAGTTGCGCGCGAAGGTGGAGGA
GCTGAGGGATGAGGGGGAGCGGTGGAGGGCGGAGGCGCTGCAGTTGCGCG
CGAAGGTGGAGGAGCTGAGGGATGAGGCAACGGAACTGCGTGCTCAGGGT
GGCATGGCCGCGGCCGTAGACGCACGAGAGTACGCCGAAGCCCTGCACGC
CGAACTGGCGGCGCTGGAACGCCTAAACCAAGCCCTCACCGCCCGCCTGG
CCGCTTCCCGGAGCGCTGCCGCCCACACCGTCGACGTCGCCGCTGCTGCC
CGGGCCTGGCTCGAGGCCGCCGCCACCGGGGAGGGGGCAGGCGGGGGGCT
CGGGCCAGCGGCGGCTGCGGCGGCAGCGGCGGCAGCGGTGGCAGCGGCTG
GCGGGGGGGGGCGGGATGCGTGGGCAACGGAACTGCGTGCTCAGGGTGGC
ATGGCCGCGGCCGTAGACGCACGAGAGTACGCCGAAGCCCTGCACGCCGA
ACTGGCGGCGCTGGAACGCCTAAACCAAGCCCTCACCGCCCGCCTGGCCG
CTTCCCGGAGCGCTGCCGCCCACACCGTCGACGTCGCCGCTGCTGCCCGG
GCCTGGCTCGAGGCCGCCGCCACCGGGGAGGGGGCAGGCGGGGGGCTCGG
GCCAGCGGCGGCTGCGGCGGCAGCGGCGGCAGCGGTGGCAGCGGCTGGCG
GGGGGGGGCGGGATGCGTGG
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