mRNA_S-ischiensis_contig1.1158.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1158.1
Unique NamemRNA_S-ischiensis_contig1.1158.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: UPI001ED8787A (probable cytosolic iron-sulfur protein assembly protein Ciao1 isoform X2 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8787A)

HSP 1 Score: 83.2 bits (204), Expect = 1.840e-13
Identity = 79/307 (25.73%), Postives = 116/307 (37.79%), Query Frame = 1
Query:  385 HGSAAYWVCFSKGGKYMATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFSPDEKYLLCASGMDLKIYWCESGILRHSIRGHDDTITGVDWSPDQQVFASCSHDAHVRFWGFHRALKMGKSSGTESLMADLFNRKCRHEEQVYRVVFAHKGPSALTCSKDKTVKLW----------NGSREHVMDFTGHEGPVLGVAWSSDDSRFASCSQDSTVNVYRPEDPAP-----LFRLRGHEGVVYAVAWCPVSTARRG---RLVSCGQDQQLIFWDYRKGRVRRRL---PSGAPQGWTMC-VTFHPGG 1239
            H    + V ++  G  +A+CG D+T  LW   SP+                           + G  L  + C S +    +  H  TI  + WSP     AS S D+    W   + L  G+ +  E + A L      HE +V  V +A  G    TCS+D++V +W          NG  E       H   V  VAW  +    AS S D TV +Y  E+P+      +  L  H   V+ +AW    + R     RL +C  D  +  W          +   P G P    +C ++ H GG
Sbjct:   13 HQGRVWNVAWNPQGDILASCGEDKTIRLW-TNSPS---------------------------SQGDKLGNWTCRSTL----VDAHQRTIRAIAWSPCGHRLASASFDSTTAIWERRQQLNTGRGADFECV-ATLEG----HESEVKSVSWARSGRLLATCSRDRSVWIWEVENGENEELNGEFECAAVLNSHTQDVKRVAWHPERELLASASYDDTVRLYM-ENPSDGEWGEVAVLSSHSSTVWGLAWESNVSERASKGTRLATCSGDGTVKIWQEFGPNNEEGVAPGPDGHPAWKCICTLSGHHGG 281          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: A0A498J896_MALDO (LisH domain-containing protein n=5 Tax=Malus TaxID=3749 RepID=A0A498J896_MALDO)

HSP 1 Score: 84.3 bits (207), Expect = 3.330e-13
Identity = 56/231 (24.24%), Postives = 109/231 (47.19%), Query Frame = 1
Query:  412 FSKGGKYMATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFSPDEKYLLCASGMDLKIYWCESGILRHSIR---GHDDTITGVDWSPDQQ-VFASCSHDAHVRFWGFHRAL----------------KMGK--SSGTESLMA--DLFNRKCRHEEQ-----VYRVVFAHKGPSALTCSKDKTVKLWNGSREHVMDFTGHEGPVLGVAWSSDDSRFASCSQDSTVNVYR 1017
            FS  GK++A+ GHD+ AVLW+  +  +  + L EH   +T   FSP    L   S  D  +   ++    +S+R   GH  ++  +D+ P++  +  SC  D  +R+W  +                   ++G+  ++  E++++  D+  + CRH  Q     ++ V +   G    + S+D +++LWN +    M  + H+G +  ++ S+     AS S D  V +++
Sbjct:  639 FSSDGKFLASGGHDKKAVLWYTDT-LKPKSTLEEHSALITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDSDGQIRYWSINNGSCSSVFKGGTAQMRFQPRLGRLLAAAAENVVSILDVETQTCRHSLQGHTKPIHSVCWDPSGEFLASVSEDSSLELWNMTENKTMTLSAHDGLIAALSVSTGTGLVASASHDKFVKLWK 867          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: A0A1J4KCT5_9EUKA (Transducin n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KCT5_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 3.660e-13
Identity = 63/243 (25.93%), Postives = 96/243 (39.51%), Query Frame = 1
Query:  385 HGSAAYWVCFSKGGKYMATCGHDRTAVLWHIRSPTRTFTRLAEHK-------EAVTQCCFSPDEKYLLCASGMDLKIYWCESGILRHSIRGHDDTITGVDWSPDQQVFASCSHDAHVRFWGFHRALKMGKSSGTESLMADLFNRKCRHEEQVYRVVFAHKGPSALTCSKDKTVKLWNGSR-EHVMDFTGHEGPVLGVAWSSDDSRFASCSQDSTVNVYRPEDPAPLFRLRGHEGVVYAVAWCP 1089
            H S  +  C+S  G+ +AT   D  A++W I+    +     +H        + +                          +G L  S+  H + I  + +SPD Q   + S D  V  W      K G+   T S           HE++V  + + +      TCS D  V +    + + +   TGH G V  + W +     ASCS D+TV V+RP D A    L+GH   VYA+ W P
Sbjct:  130 HYSDVFCGCWSPDGRLLATGSADAQAIIWEIQDNQYSSHLTLDHAVKNERMGKDIATLAXXXXXXXXXXXXXXXXXXXXTSNGELLFSLNKHREPIFALQFSPDGQYLLTGSSDFRVIMWN----TKTGEHVNTFS----------HHEQRVLDIDW-YDNRIFATCSGDSKVCICVIDQPKPIFTLTGHTGEVNKICWDTSRKMLASCSDDTTVRVFRPFDRAAPIVLQGHTQYVYAIKWAP 357          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: A0A068R5S0_9GAMM (Putative WD-repeat family protein n=1 Tax=Xenorhabdus poinarii G6 TaxID=1354304 RepID=A0A068R5S0_9GAMM)

HSP 1 Score: 83.6 bits (205), Expect = 3.780e-13
Identity = 67/273 (24.54%), Postives = 113/273 (41.39%), Query Frame = 1
Query:  427 KYMATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFSPDEKYLLCASG-MDLKIYWCESGILRHSIRGHDDTITGVDWSPDQQVFASCSHDAHVRFWGFH-RALKMGKSSGTESLMADLFNRKCRHEEQVYRVVFAHKGPSALTCSKDKTVKLWN---GSREHVMDFTGHEGPVLGVAWSSDDSRFASCSQDSTVNVYRPEDPAPLFRLRGHEGVVYAVAWCPVSTARRGRLVSCGQDQQLIFWDYRKGRVRRRLPSGAPQ-GWTMCVTF 1227
            +Y+AT G+D + +LW+    T        H     QC FS D KYL+ +S     +I+      L+  + GH D +    +SPD ++ A+CS D  +R +     +LK+                   HE  +  + ++  G S ++ S D T++ W+   G +   +DF G E     +A S D   FA    D  + +   E+     ++  H+  V  V W         +L+S   D+  I W    G + ++  +  P   W    TF
Sbjct:   16 QYIATAGYDNSIILWNALDGTPI--NKVNHDHLANQCSFSTDGKYLVSSSSDYSARIWVLPELRLKTVLYGHMDDVEMSQFSPDNKLVATCSRDKTIRVFDLEGNSLKVMHG----------------HEADIISISWSACGTSLISSSDDGTIRTWDVQQGKQVDCIDFGGVETDT--IALSCDGKIFAG-DDDGRLTIIEGENTT---QINAHKAGVKRVVW----DESNQKLISLSYDRSAIIWQLIDGTLVKQSQTALPSIVWPRSCTF 260          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: A0A087GP77_ARAAL (Uncharacterized protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087GP77_ARAAL)

HSP 1 Score: 83.2 bits (204), Expect = 4.640e-13
Identity = 78/322 (24.22%), Postives = 138/322 (42.86%), Query Frame = 1
Query:  382 AHGSAAYWVCFSKGGKYMATCGHDRTAVLWHIRSPTRTFTR--LAEHKEAVTQCCFSPDE-KYLLCASGMDLKIYWCESGILRHSIRGHDD---TITGVDWSPDQQVFASCSHDAHVRFWGFHRALKMGKSSGTESLMADLFNRKCRHEEQVYRVV---FAHKGPSALTCSKDKTVKLWNGSREHVMDFTGHEGPVLGVAWSSDDSRFASCSQDSTVNVY--RPEDPAPLFRLRGHEGVVYAVAWCPVSTARRGRLVSCGQDQQLIFWDYRKGRVRRRLPSGAPQGWTM---CVTFHPGGVKLATCSTESDVSALIWGRYAP 1305
            AH +  ++V FS  GKY+AT   D TA++W +    +   +  L  H+  V+   +SPD+ K L C +   LK++  ++G+LRH+  G+D+   T++   W PD       S D         R + M  + G E         K     ++ +VV       G S +T   DK +++ N   + V      E P+  ++ S++   F        ++++    E   PL +  GH+   Y +  C         + S  ++ Q+  W+ +K +     P     G +M   CV+++P   ++   S   D +  IWG   P
Sbjct:  223 AHKNEVWFVQFSNNGKYLATASSDCTAIIWKVLDDNKLELKHTLQSHQNPVSFVSWSPDDNKLLTCGNAEVLKLWDVDTGVLRHTF-GNDNNGFTVSSCAWFPDSTRLVCGSSDPE-------RGIVMWDTDGNEI--------KAWRGTRIPKVVDLAVTPDGESMITVFSDKEIRILNLETK-VERVIPEEQPITSLSISANGKFFIVNLSSQEIHLWDLAGEWKQPL-KFSGHKQSKYVIRSC-FGGLDSSFIASGSENSQVYIWNLKKAK-----PLEVLSGHSMTVNCVSWNPRNPRMLA-SASDDQTIRIWGPAKP 519          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: A3LYT2_PICST (Uncharacterized protein n=1 Tax=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) TaxID=322104 RepID=A3LYT2_PICST)

HSP 1 Score: 81.6 bits (200), Expect = 2.160e-12
Identity = 71/263 (27.00%), Postives = 110/263 (41.83%), Query Frame = 1
Query:  433 MATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFSPDEKYL-------------LCASG-MDLKIYWCESGIL---------RHSIRGHDDTITGVDWSPDQQVFASCSHDAHVRFWGFHRALKMGKSSGTESLMADLFNRKCRHEEQVYRVVFAHKGPSALTCSKDKTVKLWNGSREHVMDFTGHEGPVLGVAWSSDDSRFASCSQDSTVNVYRPEDPAPLFRLRGHEGVVYAVAWCPVSTARRGRLVSCGQDQQLIFW 1152
            + TC  D T  +W   S ++    +++  E +     SP+  ++             L ASG  D  IY  E  +          ++ + GH   +  +++  +Q +  S S D   + W     L          +  DL      HE  V+ V       + LTCS DK+++LWNG +E V  F+GH   +  +    D SRFAS S D TV ++  +    L  L GHE  VY +   P      G LVS G+D+ +  W
Sbjct:   27 VVTCSRDSTTRIWLPPSDSKQSRFVSDRTEPLI-VFHSPNNSFINSVTYIDSKQHEPLIASGSQDAIIYLSEVAVSDRKPGDDTGKYQLIGHAGNVCALEYKNNQII--SGSWDCTAKVWDLDTLL----------VKYDLVG----HESSVWDVKILDND-TFLTCSADKSIRLWNGKKE-VQRFSGHTDVIRKLLVFPDGSRFASASNDGTVKLWDLKSGRVLQTLHGHESFVYDLTLLP-----NGDLVSVGEDRTIRVW 265          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: A0A498HRD5_MALDO (LisH domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498HRD5_MALDO)

HSP 1 Score: 81.3 bits (199), Expect = 3.590e-12
Identity = 55/229 (24.02%), Postives = 108/229 (47.16%), Query Frame = 1
Query:  412 FSKGGKYMATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFSPDEKYLLCASGMDLKIYWCESGILRHSIR---GHDDTITGVDWSPDQQ-VFASCSHDAHVRFWGFHRAL----------------KMGK--SSGTESLMA--DLFNRKCRHEEQ-----VYRVVFAHKGPSALTCSKDKTVKLWNGSREHVMDFTGHEGPVLGVAWSSDDSRFASCSQDSTVNV 1011
            FS  GK++A+ GHD+ AVLW+  +  +  + L EH   +T   FSP    +   S  D  +   ++    +S+R   GH  ++  +D+ P++  +  SC  D  +R+W  ++                  ++G+  ++  E++++  D+  + CRH  Q     ++ V +   G    + S+D +++LWN +    M  + H+G +  ++ S+     AS S D   +V
Sbjct:  650 FSSDGKFLASGGHDKKAVLWYTDT-LKLKSTLEEHSALITDVRFSPSMPRVA-TSSFDKTVRVWDADNPDYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGQIRYWSINKGSCSCVSKGGTAQMRFQPRLGRFLAAAAENVVSILDVETQTCRHSLQGHTKPIHSVCWDPSGEFLASVSEDSSLELWNMTENKTMTLSAHDGLIAALSVSTVTGLVASASHDKFTDV 876          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: UPI001E5CF6E8 (WD40 repeat domain-containing protein n=1 Tax=Paraneptunicella aestuarii TaxID=2831148 RepID=UPI001E5CF6E8)

HSP 1 Score: 80.5 bits (197), Expect = 3.620e-12
Identity = 68/267 (25.47%), Postives = 112/267 (41.95%), Query Frame = 1
Query:  415 SKGGKYMATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFSPDEKYLLCASG-MDLKIYWCESGILRHSIRGHDDTITGVDWSPDQQVFASCSHDAHVRFWGFHRALKMGKSSGTESLMADLFNRKCRHEEQVYRVVFAHKGPSALTCSKDKTVKLWNGSREHVM---DFTGHEGPVLGVAWSSDDSRFASCSQDSTVNVYRPEDPAPLFRLRGHEGVVYAVAWCPVSTARRGRLVSCGQDQQLIFWDYR-KGRVRRRLPSGAP 1200
            S G +Y+AT G+D   +LW  +  T+       H     QC F PD KYL   S    ++I+   S  L H +  H D +  V ++P     A+CS D  +R +        G       L+         HE  V  V +   G   ++ S D T++ WN +   ++   DF G E   + V  SSD + FA  + +  +++ +  +    F+   H+  +  + +   S     RLVS   D+ +  W    K ++  +L S  P
Sbjct:   13 SLGDQYVATAGYDNKVILWDAK--TKHALAQGVHDHLANQCVFRPDGKYLASTSSDYSVRIWQLPSMRLTHLLNEHTDDVEFVCFNPVNDSIATCSRDKSIRIYD-------GSGKQQRVLLG--------HEADVLTVQWMADGEQLVSTSDDGTIRTWNANTGEMLAMYDFEGVETDTIVV--SSDGAIFAG-NDEGEISLLQGGELQQTFQA--HDAGIKRLVYSETSK----RLVSLSYDRTVKIWQLDDKQQLNLKLDSKLP 253          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: UPI000B79586A (transcriptional corepressor LEUNIG-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79586A)

HSP 1 Score: 78.2 bits (191), Expect = 5.780e-12
Identity = 58/203 (28.57%), Postives = 85/203 (41.87%), Query Frame = 1
Query:  412 FSKGGKYMATCGHDRTAVLWHIRS--PTRTFTRLAEHKEAVTQCCFSPDEKYLLCASGMDLKIYWCESGILR---HSIRGHDDTITGVDWSPDQQ-VFASCSHDAHVRFWGFHRALKMGKSSGTESLMADLFNRKCRHEEQVYRVVFAHKGPSALTCSKDKTVKLWNGSREHVMDFT-GHEGPVLGVAWSSDDSRFASCSQDS 999
            FS  GK++AT GHD+ AVLW+     P  TF     H   +T  CFSP   YL   S  D  I   ++G  R   H  RGH      VD+ P++  +  SC  +  +R+W             T+S  A +F     H      + F  +    L  ++D  V + +   +   D   GH  P+  + W       AS S+D+
Sbjct:   60 FSADGKWLATAGHDKKAVLWYADGLKPKSTFEG---HTSLITDVCFSPSMPYLA-TSSFDKTIRVWDAGNPRDSLHIFRGHSTCAVSVDFHPNRNDLICSCDGNGEIRYWSI-----------TDSNCAGVFKGGTSH------IKFQPRLGRYLAAAEDNAVSILDVETQARQDLLQGHVKPIQFLCWDPSGEYIASVSEDA 241          
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Match: A0A498HNY4_MALDO (GGACT domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498HNY4_MALDO)

HSP 1 Score: 79.7 bits (195), Expect = 7.520e-12
Identity = 56/213 (26.29%), Postives = 100/213 (46.95%), Query Frame = 1
Query:  412 FSKGGKYMATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFSPDEKYLLCASGMDLKIYWCESGILRHSIR---GHDDTITGVDWSPDQQ-VFASCSHDAHVRFWGFHRAL----------------KMGK--SSGTESLMA--DLFNRKCR-----HEEQVYRVVFAHKGPSALTCSKDKTVKLWNGSREHVMDFTGHEGPVLGVAWSS 963
            FS  GK++A+ GHD+ AVLW+  +     T L EH   +T   FSP  K  L  S  D  I   ++    +S+R   GH  ++  +D+ P++  +  SC  D  +R+W  +                   ++GK  ++  E++++  D+  + C+     H + ++ V +   G    + S+D T++LWN +    M    HEG +  +A S+
Sbjct:   63 FSSDGKFLASGGHDKRAVLWYTDTLKLKCT-LQEHSALITDVRFSPS-KPCLATSSFDKTIRVWDADNPSYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGQIRYWSINNGCCSCVSKGGTAQIRFQPRLGKFLAAAAENVVSILDVETQTCQYSLQGHTKPIHSVCWDPSGEFLASVSEDSTLELWNMTENKTMTLPAHEGLIDSLAVST 273          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001ED8787A1.840e-1325.73probable cytosolic iron-sulfur protein assembly pr... [more]
A0A498J896_MALDO3.330e-1324.24LisH domain-containing protein n=5 Tax=Malus TaxID... [more]
A0A1J4KCT5_9EUKA3.660e-1325.93Transducin n=1 Tax=Tritrichomonas foetus TaxID=114... [more]
A0A068R5S0_9GAMM3.780e-1324.54Putative WD-repeat family protein n=1 Tax=Xenorhab... [more]
A0A087GP77_ARAAL4.640e-1324.22Uncharacterized protein n=2 Tax=Arabis TaxID=50451... [more]
A3LYT2_PICST2.160e-1227.00Uncharacterized protein n=1 Tax=Scheffersomyces st... [more]
A0A498HRD5_MALDO3.590e-1224.02LisH domain-containing protein n=1 Tax=Malus domes... [more]
UPI001E5CF6E83.620e-1225.47WD40 repeat domain-containing protein n=1 Tax=Para... [more]
UPI000B79586A5.780e-1228.57transcriptional corepressor LEUNIG-like n=1 Tax=He... [more]
A0A498HNY4_MALDO7.520e-1226.29GGACT domain-containing protein n=1 Tax=Malus dome... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7846164..7850029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.9
Seed ortholog evalue4.8e-17
Seed eggNOG ortholog3711.Bra027514.1-P
KEGG koko:K17985,ko:K22382
KEGG Pathwayko04137,ko04140,map04137,map04140
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.Transducin family protein WD-40 repeat family
EggNOG OGs37IMI@33090,3G7II@35493,3HYUG@3699,KOG0266@1,KOG0266@2759,KOG0293@1,KOG0293@2759
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1883
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1158.1prot_S-ischiensis_contig1.1158.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7846260..7849520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.886252-UTR-S-ischiensis_contig1:7846163..78462591622815486.886252-UTR-S-ischiensis_contig1:7846163..7846259Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7846164..7846259 +
1695739729.453074-UTR-S-ischiensis_contig1:7846163..78462591695739729.453074-UTR-S-ischiensis_contig1:7846163..7846259Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7846164..7846259 +
1622815486.9495974-UTR-S-ischiensis_contig1:7849520..78500291622815486.9495974-UTR-S-ischiensis_contig1:7849520..7850029Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7849521..7850029 +
1695739729.5039887-UTR-S-ischiensis_contig1:7849520..78500291695739729.5039887-UTR-S-ischiensis_contig1:7849520..7850029Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7849521..7850029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.8961008-CDS-S-ischiensis_contig1:7846259..78466081622815486.8961008-CDS-S-ischiensis_contig1:7846259..7846608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7846260..7846608 +
1695739729.463862-CDS-S-ischiensis_contig1:7846259..78466081695739729.463862-CDS-S-ischiensis_contig1:7846259..7846608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7846260..7846608 +
1622815486.9064004-CDS-S-ischiensis_contig1:7846733..78468871622815486.9064004-CDS-S-ischiensis_contig1:7846733..7846887Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7846734..7846887 +
1695739729.4726253-CDS-S-ischiensis_contig1:7846733..78468871695739729.4726253-CDS-S-ischiensis_contig1:7846733..7846887Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7846734..7846887 +
1622815486.9182215-CDS-S-ischiensis_contig1:7848032..78483031622815486.9182215-CDS-S-ischiensis_contig1:7848032..7848303Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7848033..7848303 +
1695739729.4813166-CDS-S-ischiensis_contig1:7848032..78483031695739729.4813166-CDS-S-ischiensis_contig1:7848032..7848303Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7848033..7848303 +
1622815486.9350538-CDS-S-ischiensis_contig1:7849016..78495201622815486.9350538-CDS-S-ischiensis_contig1:7849016..7849520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7849017..7849520 +
1695739729.492913-CDS-S-ischiensis_contig1:7849016..78495201695739729.492913-CDS-S-ischiensis_contig1:7849016..7849520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7849017..7849520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1158.1

>prot_S-ischiensis_contig1.1158.1 ID=prot_S-ischiensis_contig1.1158.1|Name=mRNA_S-ischiensis_contig1.1158.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=426bp
MLSKATALAKHTLGGGRHKKRPAPTGAKYGLGEDSDDDDVDKKPALKKED
TEGSLTHEGLLGDILSLTKDRGERDWATKNQHRIVAFEPETYFRGAHGSA
AYWVCFSKGGKYMATCGHDRTAVLWHIRSPTRTFTRLAEHKEAVTQCCFS
PDEKYLLCASGMDLKIYWCESGILRHSIRGHDDTITGVDWSPDQQVFASC
SHDAHVRFWGFHRALKMGKSSGTESLMADLFNRKCRHEEQVYRVVFAHKG
PSALTCSKDKTVKLWNGSREHVMDFTGHEGPVLGVAWSSDDSRFASCSQD
STVNVYRPEDPAPLFRLRGHEGVVYAVAWCPVSTARRGRLVSCGQDQQLI
FWDYRKGRVRRRLPSGAPQGWTMCVTFHPGGVKLATCSTESDVSALIWGR
YAPLRDVYQWFASRWNAVWVDNVVH*
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mRNA from alignment at S-ischiensis_contig1:7846164..7850029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1158.1 ID=mRNA_S-ischiensis_contig1.1158.1|Name=mRNA_S-ischiensis_contig1.1158.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3866bp|location=Sequence derived from alignment at S-ischiensis_contig1:7846164..7850029+ (Schizocladia ischiensis KU_0333)
GGCTGGACCGCGGTGTTGCCGTTTAGCTTCTGTCCTGTGCTGGAACCCGA GCCCCTCAACTCGACACTCGGATGGTGGCTGCTTTTGCGGGGCCTGATGC TCTCGAAGGCAACTGCTCTTGCCAAGCACACATTAGGCGGTGGGCGCCAT AAGAAAAGGCCGGCACCAACCGGCGCCAAGTATGGGTTGGGGGAAGACAG CGATGACGACGATGTCGACAAAAAACCGGCCCTCAAGAAAGAGGACACGG AGGGTTCCCTCACACATGAGGGCCTGCTGGGGGACATTTTGTCCCTCACG AAGGACCGGGGAGAGCGTGACTGGGCCACCAAAAATCAGCACAGAATCGT TGCGTTTGAACCGGAGACGTACTTCCGAGGTGCCCACGGCTCGGCCGCGT ATTGGGTATGTTTCTCCAAGGGCGGGAAGTACATGGCCACCTGCGGTGAG TTGACCTTGTTCACCTTCTTTACTTTACTTGATTCGTGGGCATAGCTCTC TGCTATGAATGTCTGTCTGTGCCGGTCTAATCAGAAGATCTTGTGCTCCA TTTGTGCTTGCATTTCGAAGGGCACGATCGCACCGCAGTCCTCTGGCATA TACGCAGCCCGACCCGGACCTTCACACGGCTTGCAGAGCACAAGGAGGCA GTGACACAATGTTGTTTCTCGCCGGACGAGAAGTACCTGCTGTGCGCGTC TGGGATGGACCTCAAGATTTATTGGTGGGTGACTCCTTGCCCCGCTGATA CTCAAATACTTCAAAGTACCTAAACACAGTTGCGTAGTACGAGATCAACC ATAAGCCGTGGGGTGGAAGCACTTGATACAAGGCCTCCTAATTGACCACC CCGGTCCATCCGGCCGATGGAACCCCCTACTAATTTCAGGTAGCACATGC CTGCCGGGGGGGGGCGGCGCAAATGCCTGCTCGGTGATCTCTTTAACGGC CAATTTTCCTAGCGCGGCCGAGCGCGAGCGAACGAGCGAACGACCCCCAA CCTCACGTCAAAACACCCCGAGGGGGAACCTCTCTAAGGCTGACCGCGGT TCTACGAGATTGGACGTATGGGAGGGGCGCCCCTCCGTACTTGCAGTAGG CTTTCAAATTACTGGTACCGGCTCTGTCGCGGTGTTGCTCGCGGTGCGCG CGGGGATGACGTTTTTTCTGGCGGCGCAATTAGGACTTTGCCACTGGGCT GCTTCAGACAGTGTTTCAACTTGTGAAAGGTGCCGTGAATTTTTATCATT CCATCAGTGGGGGGCGGGTCGCGAACCGTGCAGCACAGCGTGAGAACTCC CGCTCAAACCCGCACAAAAGAGTCACTACAGACGGGACATTTTTCGGCGA TTGGCACCCTAGAGCTATGGCGAAAAACCCGTGCATGCCTGCCACGATGA TACGAAAGGAGTTGCACTCCGCCTAACCGGCGTCTTGCCCCTCCCATGAA AAAAATCTAGCCCAAACCCGCACCTCCACCACCCCCCCAAAGGGGGCTGA GGGTTCATCGGGGCCGGTGGACCCCCGGGGTCCATTGGTGAGTTTTGCAC TTGATATGTGCTGCCAAGTTTTGCTGCACAGGGCTCTCGCAAGAGAACCT CACGGGCACAGCTTTGGACACACGGCCAGTCATGGGGAAGGTCACTCCTG GCTCCAAGTGGTTTGCGGACATAGGTTAGCCTGTGAATGTCTGCGCATCA GGATCATCTTCACAGTGCCCCAACATATTTGGGCTTCTTTGCTCGAAATA TTGAGATGCGTGCCGCCTTGTTCATTGCCATCATTTGAGGTATAGCTGTT CGGGCGGATAACTTATGGCCACAACAAAAATATGGAATGGGACTATTCTC TGCCCCCACTTGCACCCAGGTGTGAGAGCGGGATATTGCGGCACAGCATT CGTGGCCACGATGACACAATCACCGGGGTGGACTGGTCCCCAGACCAGCA GGTTTTTGCATCCTGCTCGCATGATGCTCACGTGCGTTTCTGGGGCTTCC ACCGGGCCCTGAAGATGGGCAAATCGTCCGGCACGGAGTCCTTGATGGCC GACCTGTTCAACCGGAAGTGCCGTCACGAGGAGCAAGTTTACCGGGTTGT GTTCGCTCACAAAGGGCCCTCTGCCCTAACGTGTTCCAAGGTACGCTATT GTACCCCCCAGCGTCGTGCTGTGCAGGTATGACCACCTATGCGCACCAAT AGCATGGTGATATGATACAGGTGGCTGTCGTCATCAATATATACTTCTCA GTAGTTTCTTGCAAGAAGTTAAACAAAGGAGTGGGAAAGAAGAGGTGTCA CTGCATACGCGAGATCAGGGCCCCACCCCCGGAAGCCCCTTCCTTCACTC GCAGGGCATATAGAGCAGAAAATTGAAGAACAAGGAAGGAAGAGAGCGGG AGGGAACAACAGTGGGGGAGGGATCTCTTGTGCCATCAACAAATAGTTTT GGGCAAGCAAATTCTTCAGAGCATCTAAATATCGATGCTGCATCTATTAT ACGTTTCTGCCCTCGTACACAGTGAGGCATGAGGTGGTTCTCCCAATGTT GACTGCAGACCAGAGGAAGGCTGCCACACACCCCACTCGTCTTGGCACCC TTACTCCCCTTCTCACGCATCTCAACAGCACACCCACCCCCATGAGCCCT TTGGCACCCTCGAAGATCAACATTTGACCGTTAGAGTCCACAGCAGGACG GCACACGCCCACAGTACCATGGGCGATTTGCGTAAGCAATGCCGGGCGAG AAAAAAAGCACAACGGCTACTTACTGCAGCGCCCCCCAGCACCGCAGCTG CCACCAACCCCGCCTCCGCCCTGCCTATTCCGCCCGCCCCCTGGGGGGCC CAGGACAAGACAGTCAAGCTGTGGAACGGGAGCCGCGAGCACGTGATGGA TTTCACGGGCCACGAGGGCCCCGTGCTGGGGGTGGCCTGGAGCTCGGACG ACTCGCGGTTCGCCTCCTGCTCACAGGACAGCACGGTCAACGTCTACCGG CCCGAAGACCCGGCCCCGCTCTTCCGCCTGCGGGGCCACGAGGGGGTGGT GTACGCCGTGGCCTGGTGCCCTGTCTCCACGGCCCGCCGCGGGCGCCTGG TGTCGTGCGGGCAGGACCAGCAGCTCATATTCTGGGATTACCGCAAGGGA AGGGTGAGGCGGCGGCTGCCGTCGGGCGCGCCGCAGGGGTGGACCATGTG CGTGACCTTCCACCCGGGGGGGGTGAAGCTGGCCACCTGCAGCACGGAGA GCGACGTCTCCGCCCTGATCTGGGGGCGGTACGCGCCCCTCAGGGACGTC TACCAGTGGTTTGCGTCCCGGTGGAACGCCGTCTGGGTGGACAACGTCGT GCACTGAACTTGGTACTTCCATGAGTTCTTCGAAGTACATGCTTTGTGCA AGTACGAGTGCCAAGATACTGTACTGTACATACCATACTATAGTGCCTAT TTTGAAGTACCCTAGCGCACTTCGAGTGGTTTTTCAGAGTATTGCGGCCG TACGCTGGTCGCATTATACGCTAGTGGATTCGTAAGGAAGCACCTGTTGT ACTGTGCGGTCCTTGGAAGTCCTTCGACGTACACGAGTAGTCCTGTACGT GAAATAGCATTGTTGCTGACTCACCTGTTAGCCCCATAGGTACAAACGTT GCAATACAGTAGTGGGGGCAGTCGATCGGCGAGAAACAATAACTAAACCT GGTCCATGAATCGGGTCTTCGGACAGCACCAGCGTCTGAATCGCTGCAAC AATTGCCCCACACATGGAGACGCGCGCTCTCGTTGCTTCCATGCCCATTC AACCCCGGGCTCGTTCGCACCACAATTCACCAGCACCATTGCCCTTGCCT GTACAGTACTGTAGTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7846164..7850029+

>mRNA_S-ischiensis_contig1.1158.1 ID=mRNA_S-ischiensis_contig1.1158.1|Name=mRNA_S-ischiensis_contig1.1158.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2556bp|location=Sequence derived from alignment at S-ischiensis_contig1:7846164..7850029+ (Schizocladia ischiensis KU_0333)
ATGCTCTCGAAGGCAACTGCTCTTGCCAAGCACACATTAGGCGGTGGGCG
CCATAAGAAAAGGCCGGCACCAACCGGCGCCAAGTATGGGTTGGGGGAAG
ACAGCGATGACGACGATGTCGACAAAAAACCGGCCCTCAAGAAAGAGGAC
ACGGAGGGTTCCCTCACACATGAGGGCCTGCTGGGGGACATTTTGTCCCT
CACGAAGGACCGGGGAGAGCGTGACTGGGCCACCAAAAATCAGCACAGAA
TCGTTGCGTTTGAACCGGAGACGTACTTCCGAGGTGCCCACGGCTCGGCC
GCGTATTGGGTATGTTTCTCCAAGGGCGGGAAGTACATGGCCACCTGCGA
TGCTCTCGAAGGCAACTGCTCTTGCCAAGCACACATTAGGCGGTGGGCGC
CATAAGAAAAGGCCGGCACCAACCGGCGCCAAGTATGGGTTGGGGGAAGA
CAGCGATGACGACGATGTCGACAAAAAACCGGCCCTCAAGAAAGAGGACA
CGGAGGGTTCCCTCACACATGAGGGCCTGCTGGGGGACATTTTGTCCCTC
ACGAAGGACCGGGGAGAGCGTGACTGGGCCACCAAAAATCAGCACAGAAT
CGTTGCGTTTGAACCGGAGACGTACTTCCGAGGTGCCCACGGCTCGGCCG
CGTATTGGGTATGTTTCTCCAAGGGCGGGAAGTACATGGCCACCTGCGGG
CACGATCGCACCGCAGTCCTCTGGCATATACGCAGCCCGACCCGGACCTT
CACACGGCTTGCAGAGCACAAGGAGGCAGTGACACAATGTTGTTTCTCGC
CGGACGAGAAGTACCTGCTGTGCGCGTCTGGGATGGACCTCAAGATTTAT
TGGGCACGATCGCACCGCAGTCCTCTGGCATATACGCAGCCCGACCCGGA
CCTTCACACGGCTTGCAGAGCACAAGGAGGCAGTGACACAATGTTGTTTC
TCGCCGGACGAGAAGTACCTGCTGTGCGCGTCTGGGATGGACCTCAAGAT
TTATTGGTGTGAGAGCGGGATATTGCGGCACAGCATTCGTGGCCACGATG
ACACAATCACCGGGGTGGACTGGTCCCCAGACCAGCAGGTTTTTGCATCC
TGCTCGCATGATGCTCACGTGCGTTTCTGGGGCTTCCACCGGGCCCTGAA
GATGGGCAAATCGTCCGGCACGGAGTCCTTGATGGCCGACCTGTTCAACC
GGAAGTGCCGTCACGAGGAGCAAGTTTACCGGGTTGTGTTCGCTCACAAA
GGGCCCTCTGCCCTAACGTGTTCCAAGGTGTGAGAGCGGGATATTGCGGC
ACAGCATTCGTGGCCACGATGACACAATCACCGGGGTGGACTGGTCCCCA
GACCAGCAGGTTTTTGCATCCTGCTCGCATGATGCTCACGTGCGTTTCTG
GGGCTTCCACCGGGCCCTGAAGATGGGCAAATCGTCCGGCACGGAGTCCT
TGATGGCCGACCTGTTCAACCGGAAGTGCCGTCACGAGGAGCAAGTTTAC
CGGGTTGTGTTCGCTCACAAAGGGCCCTCTGCCCTAACGTGTTCCAAGGA
CAAGACAGTCAAGCTGTGGAACGGGAGCCGCGAGCACGTGATGGATTTCA
CGGGCCACGAGGGCCCCGTGCTGGGGGTGGCCTGGAGCTCGGACGACTCG
CGGTTCGCCTCCTGCTCACAGGACAGCACGGTCAACGTCTACCGGCCCGA
AGACCCGGCCCCGCTCTTCCGCCTGCGGGGCCACGAGGGGGTGGTGTACG
CCGTGGCCTGGTGCCCTGTCTCCACGGCCCGCCGCGGGCGCCTGGTGTCG
TGCGGGCAGGACCAGCAGCTCATATTCTGGGATTACCGCAAGGGAAGGGT
GAGGCGGCGGCTGCCGTCGGGCGCGCCGCAGGGGTGGACCATGTGCGTGA
CCTTCCACCCGGGGGGGGTGAAGCTGGCCACCTGCAGCACGGAGAGCGAC
GTCTCCGCCCTGATCTGGGGGCGGTACGCGCCCCTCAGGGACGTCTACCA
GTGGTTTGCGTCCCGGTGGAACGCCGTCTGGGTGGACAACGTCGTGCACT
GAGACAAGACAGTCAAGCTGTGGAACGGGAGCCGCGAGCACGTGATGGAT
TTCACGGGCCACGAGGGCCCCGTGCTGGGGGTGGCCTGGAGCTCGGACGA
CTCGCGGTTCGCCTCCTGCTCACAGGACAGCACGGTCAACGTCTACCGGC
CCGAAGACCCGGCCCCGCTCTTCCGCCTGCGGGGCCACGAGGGGGTGGTG
TACGCCGTGGCCTGGTGCCCTGTCTCCACGGCCCGCCGCGGGCGCCTGGT
GTCGTGCGGGCAGGACCAGCAGCTCATATTCTGGGATTACCGCAAGGGAA
GGGTGAGGCGGCGGCTGCCGTCGGGCGCGCCGCAGGGGTGGACCATGTGC
GTGACCTTCCACCCGGGGGGGGTGAAGCTGGCCACCTGCAGCACGGAGAG
CGACGTCTCCGCCCTGATCTGGGGGCGGTACGCGCCCCTCAGGGACGTCT
ACCAGTGGTTTGCGTCCCGGTGGAACGCCGTCTGGGTGGACAACGTCGTG
CACTGA
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