mRNA_S-ischiensis_contig1.1154.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1154.1
Unique NamemRNA_S-ischiensis_contig1.1154.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7822814..7824046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size646
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.6037788-CDS-S-ischiensis_contig1:7822813..78230881622815486.6037788-CDS-S-ischiensis_contig1:7822813..7823088Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7822814..7823088 +
1695739729.313077-CDS-S-ischiensis_contig1:7822813..78230881695739729.313077-CDS-S-ischiensis_contig1:7822813..7823088Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7822814..7823088 +
1622815486.6171982-CDS-S-ischiensis_contig1:7823675..78240451622815486.6171982-CDS-S-ischiensis_contig1:7823675..7824045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7823676..7824045 +
1695739729.3235066-CDS-S-ischiensis_contig1:7823675..78240451695739729.3235066-CDS-S-ischiensis_contig1:7823675..7824045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7823676..7824045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1154.1prot_S-ischiensis_contig1.1154.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7822814..7824045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1154.1

>prot_S-ischiensis_contig1.1154.1 ID=prot_S-ischiensis_contig1.1154.1|Name=mRNA_S-ischiensis_contig1.1154.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=215bp
LVAVAAAEATAGGDGERLGVGWVPGGKAEARAGLAAAEAAAAGAELFSRP
GRLWQVYSGVVDGVVAAWSRDRSSYALDPTWLLPKLCAYGHWQGVIRVCL
SMASDWGGDRHRAANLPGGLAAAGPGPSAGLGLAQGPGRGLAQAPAVFDS
LRDACKAAFSAGDHALLAEALGAMWALDCRWGPGAAADAADNEDDLDGPA
GPGWEGGGGGVRGAG
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mRNA from alignment at S-ischiensis_contig1:7822814..7824046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1154.1 ID=mRNA_S-ischiensis_contig1.1154.1|Name=mRNA_S-ischiensis_contig1.1154.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1233bp|location=Sequence derived from alignment at S-ischiensis_contig1:7822814..7824046+ (Schizocladia ischiensis KU_0333)
CTCGTAGCGGTGGCGGCGGCGGAGGCGACGGCGGGGGGTGATGGGGAGCG
GTTGGGCGTGGGCTGGGTTCCGGGTGGCAAGGCCGAGGCCAGGGCTGGCC
TGGCGGCGGCTGAGGCTGCGGCGGCGGGGGCCGAGCTCTTTTCCCGGCCC
GGCAGGCTCTGGCAGGTTTACTCGGGCGTGGTGGACGGCGTGGTGGCTGC
CTGGAGCCGGGACCGGTCCTCGTACGCCCTGGACCCCACTTGGCTGCTGC
CCAAGCTCTGCGCATATGGGCACTGGTGCGTGCGTTGTGTGCGGGCGTGG
GGTGTGCCCCCCCCACTCCCCCCCCTCTCTCCGGCTCGTGCGGGGAGCGC
AAGCGGTGGCAAGGCGGGGCAGGGGGGCACAACTGGTCACCTGCTACCTA
CTGCGCGTTGCTCACTTCCCGCCATTGCTTGGAACTATTGCTGTAGAGGA
GAGTACCATTCTTCCAGGGGGCGGGCCAACATGCTTCGTTTGTGTGCCTG
CCTGGCTGCGTTCCTGTGTTTCTGTCTGCCTACCAGTGGATGCAGCGGTG
GAGCAATTTGCCCCACGCACCTTCTCCGCTGCGTGGGTTTTTGTGTTCAG
AGCTCTCTGCGGAGTGGCCGTATCCATCGCGGGAGAGTCTTGCCCCCCCC
CCTTCTCCCGTGTCGCCTGTCCTGCTCGTGCGAGCCCCCCCCAACGCGCT
GGCGTTCGTCCTGTTGCACTCTGGATGCTCTATAGCACCACCCCTTCTGC
CCTTGTGGACCCTCAAGCTCACTCACACGTCCACTACAAAACGCAGCCAA
TACGTGCCCGGATGCATGTCACGGTAAATAACGCATGCACTGCGTCCCCG
CACCTCACACAGGCAAGGCGTCATCCGTGTGTGCCTAAGCATGGCCAGCG
ACTGGGGCGGGGACCGTCACCGCGCCGCCAACCTCCCGGGGGGATTGGCG
GCGGCGGGCCCGGGACCCAGTGCCGGCCTGGGCCTGGCTCAGGGCCCTGG
GCGAGGGCTGGCCCAAGCCCCGGCCGTTTTTGACAGCCTACGGGACGCCT
GCAAGGCGGCGTTTTCCGCCGGCGACCACGCTCTGCTCGCCGAGGCACTG
GGCGCCATGTGGGCCCTGGACTGCCGCTGGGGGCCGGGCGCGGCGGCGGA
CGCCGCGGACAACGAGGACGACCTTGACGGCCCTGCCGGACCCGGATGGG
AGGGCGGTGGCGGTGGCGTGCGTGGGGCCGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7822814..7824046+

>mRNA_S-ischiensis_contig1.1154.1 ID=mRNA_S-ischiensis_contig1.1154.1|Name=mRNA_S-ischiensis_contig1.1154.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1290bp|location=Sequence derived from alignment at S-ischiensis_contig1:7822814..7824046+ (Schizocladia ischiensis KU_0333)
CTCGTAGCGGTGGCGGCGGCGGAGGCGACGGCGGGGGGTGATGGGGAGCG
GTTGGGCGTGGGCTGGGTTCCGGGTGGCAAGGCCGAGGCCAGGGCTGGCC
TGGCGGCGGCTGAGGCTGCGGCGGCGGGGGCCGAGCTCTTTTCCCGGCCC
GGCAGGCTCTGGCAGGTTTACTCGGGCGTGGTGGACGGCGTGGTGGCTGC
CTGGAGCCGGGACCGGTCCTCGTACGCCCTGGACCCCACTTGGCTGCTGC
CCAAGCTCTGCGCATATGGGCACTGCTCGTAGCGGTGGCGGCGGCGGAGG
CGACGGCGGGGGGTGATGGGGAGCGGTTGGGCGTGGGCTGGGTTCCGGGT
GGCAAGGCCGAGGCCAGGGCTGGCCTGGCGGCGGCTGAGGCTGCGGCGGC
GGGGGCCGAGCTCTTTTCCCGGCCCGGCAGGCTCTGGCAGGTTTACTCGG
GCGTGGTGGACGGCGTGGTGGCTGCCTGGAGCCGGGACCGGTCCTCGTAC
GCCCTGGACCCCACTTGGCTGCTGCCCAAGCTCTGCGCATATGGGCACTG
GCAAGGCGTCATCCGTGTGTGCCTAAGCATGGCCAGCGACTGGGGCGGGG
ACCGTCACCGCGCCGCCAACCTCCCGGGGGGATTGGCGGCGGCGGGCCCG
GGACCCAGTGCCGGCCTGGGCCTGGCTCAGGGCCCTGGGCGAGGGCTGGC
CCAAGCCCCGGCCGTTTTTGACAGCCTACGGGACGCCTGCAAGGCGGCGT
TTTCCGCCGGCGACCACGCTCTGCTCGCCGAGGCACTGGGCGCCATGTGG
GCCCTGGACTGCCGCTGGGGGCCGGGCGCGGCGGCGGACGCCGCGGACAA
CGAGGACGACCTTGACGGCCCTGCCGGACCCGGATGGGAGGGCGGTGGCG
GTGGCGTGCGTGGGGCCGGCGCAAGGCGTCATCCGTGTGTGCCTAAGCAT
GGCCAGCGACTGGGGCGGGGACCGTCACCGCGCCGCCAACCTCCCGGGGG
GATTGGCGGCGGCGGGCCCGGGACCCAGTGCCGGCCTGGGCCTGGCTCAG
GGCCCTGGGCGAGGGCTGGCCCAAGCCCCGGCCGTTTTTGACAGCCTACG
GGACGCCTGCAAGGCGGCGTTTTCCGCCGGCGACCACGCTCTGCTCGCCG
AGGCACTGGGCGCCATGTGGGCCCTGGACTGCCGCTGGGGGCCGGGCGCG
GCGGCGGACGCCGCGGACAACGAGGACGACCTTGACGGCCCTGCCGGACC
CGGATGGGAGGGCGGTGGCGGTGGCGTGCGTGGGGCCGGC
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