mRNA_S-ischiensis_contig1.1151.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1151.1
Unique NamemRNA_S-ischiensis_contig1.1151.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5K6E3_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.870e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG    ++P  +         +    I VD   T++P +H
Sbjct:  243 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRRECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 383
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5KCQ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.080e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG    ++P  +         +    I VD   T++P +H
Sbjct:  243 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRRECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 383
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5KN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN52_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.160e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG    ++P  +         +    I VD   T++P +H
Sbjct:  243 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRRECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 383
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5K4B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.290e-22
Identity = 56/141 (39.72%), Postives = 80/141 (56.74%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +   V RF    ++V+VGDFN+RVG     G  IGQ GE+  N +G +M+ FL S  L+  NG    ++P SS         +T   I VD   T++P +H
Sbjct:  210 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEHVQRFSRKEDLVMVGDFNSRVGKASSRGQAIGQHGEEKVNDNGVRMLEFLGSNELMVLNGRRECDKPESSRQRADCNEYSTLDYILVDRGSTQIPELH 350
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5KT17_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT17_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.310e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG    ++P  +         +    I VD   T++P +H
Sbjct:  243 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRRECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 383
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BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5K6P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.370e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG    ++P  +         +    I VD   T++P +H
Sbjct:  323 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRRECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 463
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.540e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG    ++P  +         +    I VD   T++P +H
Sbjct:  486 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRRECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 626
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.580e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG    ++P  +         +    I VD   T++P +H
Sbjct:  221 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRRECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 361
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5L2J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.020e-21
Identity = 57/141 (40.43%), Postives = 77/141 (54.61%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG---LERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVH 418
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF     VV+VGDFN+RVG     G  IGQ GED  N +G  M+ FL S  LV  NG    ++P  +         +    I VD   T++P +H
Sbjct:   30 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGVVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVFMLEFLGSNELVVLNGRTECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELH 170
[Close]
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Match: A0A6H5KYY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.260e-21
Identity = 63/169 (37.28%), Postives = 89/169 (52.66%), Query Frame = 2 
Query:    8 ESMWLKAPGDRGRRDLYIGNVYMPFVGTQIAD-VTEWFDNLAGDVGRFQALWEVVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANGLERPSSSPLGETLRPLATRR*IAVDDSGTRLPMVHRFL*PRPSDEHPREHGRNGVNNQS*TMFSSV 511
            ES+WLK PG+RG +DL++GNVY+P    ++A    E F  +  DV RF    EVV+VGDFN+RVG     G  IGQ GED  N +G +M+ FL S  L+  NG          E  +P  TR+  A ++S     ++   L  R S + P  H +  V  +   ++  V
Sbjct:  182 ESLWLKIPGERGEKDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRR--------ECDQPDFTRQRAACNESS----ILDHVLADRGSTQIPELHVKGLVKKKKKCIWDEV 338
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6E3_9PHAE4.870e-2240.43Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KCQ8_9PHAE5.080e-2240.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KN52_9PHAE5.160e-2240.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4B6_9PHAE5.290e-2239.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT17_9PHAE5.310e-2240.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6P2_9PHAE5.370e-2240.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5C9_9PHAE5.540e-2240.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LB09_9PHAE5.580e-2240.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2J3_9PHAE3.020e-2140.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYY9_9PHAE3.260e-2137.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7816455..7816992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1151.1prot_S-ischiensis_contig1.1151.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7816468..7816830 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.3868504-UTR-S-ischiensis_contig1:7816454..78164671622815486.3868504-UTR-S-ischiensis_contig1:7816454..7816467Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7816455..7816467 +
1695739729.2481403-UTR-S-ischiensis_contig1:7816454..78164671695739729.2481403-UTR-S-ischiensis_contig1:7816454..7816467Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7816455..7816467 +
1622815486.4159088-UTR-S-ischiensis_contig1:7816830..78169921622815486.4159088-UTR-S-ischiensis_contig1:7816830..7816992Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7816831..7816992 +
1695739729.2673078-UTR-S-ischiensis_contig1:7816830..78169921695739729.2673078-UTR-S-ischiensis_contig1:7816830..7816992Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7816831..7816992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.3975961-CDS-S-ischiensis_contig1:7816467..78168301622815486.3975961-CDS-S-ischiensis_contig1:7816467..7816830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7816468..7816830 +
1695739729.2586062-CDS-S-ischiensis_contig1:7816467..78168301695739729.2586062-CDS-S-ischiensis_contig1:7816467..7816830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7816468..7816830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1151.1

>prot_S-ischiensis_contig1.1151.1 ID=prot_S-ischiensis_contig1.1151.1|Name=mRNA_S-ischiensis_contig1.1151.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
MWLKAPGDRGRRDLYIGNVYMPFVGTQIADVTEWFDNLAGDVGRFQALWE
VVVVGDFNARVGCVDLPGDVIGQFGEDTRNIHGDKMIAFLHSTGLVAANG
LERPSSSPLGETLRPLATRR*
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mRNA from alignment at S-ischiensis_contig1:7816455..7816992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1151.1 ID=mRNA_S-ischiensis_contig1.1151.1|Name=mRNA_S-ischiensis_contig1.1151.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=538bp|location=Sequence derived from alignment at S-ischiensis_contig1:7816455..7816992+ (Schizocladia ischiensis KU_0333)
GTGCCTTGAGAGTATGTGGTTGAAGGCCCCAGGGGATAGGGGTAGGCGGG
ATTTGTATATTGGGAACGTGTATATGCCCTTCGTTGGTACCCAGATAGCG
GATGTGACAGAATGGTTTGACAATCTGGCAGGCGATGTAGGTAGGTTCCA
AGCCCTCTGGGAGGTAGTTGTGGTTGGGGACTTCAATGCTAGGGTAGGTT
GCGTGGACTTGCCTGGTGATGTGATAGGACAGTTTGGAGAGGACACTAGG
AATATCCATGGAGACAAGATGATAGCTTTTCTACACAGCACTGGTCTTGT
CGCCGCGAACGGTCTGGAGCGCCCCTCATCTAGCCCCTTGGGCGAAACCC
TCCGACCCCTAGCCACTCGGCGGTAAATAGCCGTGGACGACAGCGGAACT
CGACTACCCATGGTGCACAGGTTCCTGTAGCCCCGCCCCTCGGATGAACA
CCCGCGCGAGCACGGCCGCAACGGGGTGAACAATCAGTCCTAGACTATGT
TCTCGTCAGTGCCACCATGCTGCGGAAGTGTCGAGTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7816455..7816992+

>mRNA_S-ischiensis_contig1.1151.1 ID=mRNA_S-ischiensis_contig1.1151.1|Name=mRNA_S-ischiensis_contig1.1151.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig1:7816455..7816992+ (Schizocladia ischiensis KU_0333)
ATGTGGTTGAAGGCCCCAGGGGATAGGGGTAGGCGGGATTTGTATATTGG
GAACGTGTATATGCCCTTCGTTGGTACCCAGATAGCGGATGTGACAGAAT
GGTTTGACAATCTGGCAGGCGATGTAGGTAGGTTCCAAGCCCTCTGGGAG
GTAGTTGTGGTTGGGGACTTCAATGCTAGGGTAGGTTGCGTGGACTTGCC
TGGTGATGTGATAGGACAGTTTGGAGAGGACACTAGGAATATCCATGGAG
ACAAGATGATAGCTTTTCTACACAGCACTGGTCTTGTCGCCGCGAACGGT
CTGGAGCGCCCCTCATCTAGCCCCTTGGGCGAAACCCTCCGACCCCTAGC
CACTCGGCGGTAAATGTGGTTGAAGGCCCCAGGGGATAGGGGTAGGCGGG
ATTTGTATATTGGGAACGTGTATATGCCCTTCGTTGGTACCCAGATAGCG
GATGTGACAGAATGGTTTGACAATCTGGCAGGCGATGTAGGTAGGTTCCA
AGCCCTCTGGGAGGTAGTTGTGGTTGGGGACTTCAATGCTAGGGTAGGTT
GCGTGGACTTGCCTGGTGATGTGATAGGACAGTTTGGAGAGGACACTAGG
AATATCCATGGAGACAAGATGATAGCTTTTCTACACAGCACTGGTCTTGT
CGCCGCGAACGGTCTGGAGCGCCCCTCATCTAGCCCCTTGGGCGAAACCC
TCCGACCCCTAGCCACTCGGCGGTAA
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