mRNA_S-ischiensis_contig1.115.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.115.1
Unique NamemRNA_S-ischiensis_contig1.115.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:740606..741133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.115.1prot_S-ischiensis_contig1.115.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 740610..740927 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.8392577-UTR-S-ischiensis_contig1:740605..7406091622815363.8392577-UTR-S-ischiensis_contig1:740605..740609Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 740606..740609 +
1695739661.195338-UTR-S-ischiensis_contig1:740605..7406091695739661.195338-UTR-S-ischiensis_contig1:740605..740609Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 740606..740609 +
1622815363.8672953-UTR-S-ischiensis_contig1:740927..7411331622815363.8672953-UTR-S-ischiensis_contig1:740927..741133Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 740928..741133 +
1695739661.219788-UTR-S-ischiensis_contig1:740927..7411331695739661.219788-UTR-S-ischiensis_contig1:740927..741133Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 740928..741133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.856059-CDS-S-ischiensis_contig1:740609..7409271622815363.856059-CDS-S-ischiensis_contig1:740609..740927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 740610..740927 +
1695739661.2083719-CDS-S-ischiensis_contig1:740609..7409271695739661.2083719-CDS-S-ischiensis_contig1:740609..740927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 740610..740927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.115.1

>prot_S-ischiensis_contig1.115.1 ID=prot_S-ischiensis_contig1.115.1|Name=mRNA_S-ischiensis_contig1.115.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
MDRKWARPTHRGQAGVQLAGRATGGSSSGHDRPVLPVLGLLQQKWLNKVR
CAAAAVYLLRGPWAASRFCPLARGFSSARARPGRVWPPALLEREARVCTR
ASVQT*
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mRNA from alignment at S-ischiensis_contig1:740606..741133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.115.1 ID=mRNA_S-ischiensis_contig1.115.1|Name=mRNA_S-ischiensis_contig1.115.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=528bp|location=Sequence derived from alignment at S-ischiensis_contig1:740606..741133+ (Schizocladia ischiensis KU_0333)
AGTTATGGACCGCAAGTGGGCGAGGCCCACCCACCGTGGGCAAGCAGGCG
TCCAGCTGGCCGGCCGTGCTACCGGCGGGAGTAGCAGCGGCCATGACAGG
CCCGTTCTGCCGGTTCTGGGTCTGCTGCAGCAAAAATGGCTCAACAAGGT
GCGATGTGCAGCCGCGGCTGTGTATCTGCTGCGTGGGCCCTGGGCGGCCT
CGCGTTTTTGTCCGCTGGCGAGGGGGTTTAGCTCAGCGCGGGCCAGGCCT
GGGCGTGTGTGGCCCCCCGCCCTCCTTGAGAGAGAGGCGAGAGTGTGCAC
GCGGGCCTCCGTGCAGACATAGGACATAGGACGATCGTGTCACTTGCAGT
ACTGTACTTCCGGAATTGGTTTATTGAACGTGTGCGGCACGGTACACGTG
CAGCAGCGGCGTTTACTCAACTTCAAGTACTTGGAAGTACCGAGCTCTGC
TGGCAGGGGTGTGGGATGGGTGCTACGCCTTGGGGCGAAGGGACGGGGGC
TAGCTGGGCCAGTCGCGGCGCCCGCCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:740606..741133+

>mRNA_S-ischiensis_contig1.115.1 ID=mRNA_S-ischiensis_contig1.115.1|Name=mRNA_S-ischiensis_contig1.115.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig1:740606..741133+ (Schizocladia ischiensis KU_0333)
ATGGACCGCAAGTGGGCGAGGCCCACCCACCGTGGGCAAGCAGGCGTCCA
GCTGGCCGGCCGTGCTACCGGCGGGAGTAGCAGCGGCCATGACAGGCCCG
TTCTGCCGGTTCTGGGTCTGCTGCAGCAAAAATGGCTCAACAAGGTGCGA
TGTGCAGCCGCGGCTGTGTATCTGCTGCGTGGGCCCTGGGCGGCCTCGCG
TTTTTGTCCGCTGGCGAGGGGGTTTAGCTCAGCGCGGGCCAGGCCTGGGC
GTGTGTGGCCCCCCGCCCTCCTTGAGAGAGAGGCGAGAGTGTGCACGCGG
GCCTCCGTGCAGACATAGATGGACCGCAAGTGGGCGAGGCCCACCCACCG
TGGGCAAGCAGGCGTCCAGCTGGCCGGCCGTGCTACCGGCGGGAGTAGCA
GCGGCCATGACAGGCCCGTTCTGCCGGTTCTGGGTCTGCTGCAGCAAAAA
TGGCTCAACAAGGTGCGATGTGCAGCCGCGGCTGTGTATCTGCTGCGTGG
GCCCTGGGCGGCCTCGCGTTTTTGTCCGCTGGCGAGGGGGTTTAGCTCAG
CGCGGGCCAGGCCTGGGCGTGTGTGGCCCCCCGCCCTCCTTGAGAGAGAG
GCGAGAGTGTGCACGCGGGCCTCCGTGCAGACATAG
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