mRNA_S-ischiensis_contig1.1149.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1149.1
Unique NamemRNA_S-ischiensis_contig1.1149.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1149.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 3.910e-21
Identity = 68/172 (39.53%), Postives = 90/172 (52.33%), Query Frame = 1 
Query:  286 SAEVVHEALPTEWMAEEVAVRQGV----LKPPDPLPAKDAFDLATGLEAVQHFGTHTLAEVVQAVA----------------------------SGPGAAELGLVEGPTCGGVVG---ANWPPPALTAALATVTVKQLMQVMRCDSEPLLQVWMRCFVPLDASARSRARGSL 696
            + ++  EA+ T  + +E+   + V    + PP PLPA  A+DL T LE+VQHF T TLA VVQA A                            +G G+A     EG    G+V    A WPP  LTAAL  VT +Q+   MRCD+EPL+Q+WMRCF P+DA  R++  G L
Sbjct:  548 ACDIFLEAVSTAGLQDELLCNRDVEVLGVDPPRPLPAA-AYDLQTALESVQHFATQTLAGVVQAAAVRGSDLYDNDYDPLSGARSPRHLAGGGRAGKGSAAKEAREGGVAAGLVEEWEAAWPPRELTAALGLVTARQMAHAMRCDTEPLIQIWMRCFTPVDAKHRTKLWGGL 718
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BLAST of mRNA_S-ischiensis_contig1.1149.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.620e-19
Identity = 61/142 (42.96%), Postives = 75/142 (52.82%), Query Frame = 1 
Query:  364 PPDPLPAKDAFDLATGLEAVQHFGTHTLAEVVQAVA----------------------------SGPGAAELGLVEGPTCGGVVG---ANWPPPALTAALATVTVKQLMQVMRCDSEPLLQVWMRCFVPLDASARSRARGSL 696
            PP PLPA  A+DL T LE+VQHF T TLA VVQA A                            +G G+      +G    G+V    A WPP  LTAAL  VT +Q+   MRCD+EPL+Q+WMRCF P+DA  R++  G L
Sbjct:   40 PPRPLPAA-AYDLQTALESVQHFATQTLAGVVQAAAVRGSDLYDNDYDSLSGARSPRHLAGGGRAGKGSGAKEARDGGVAAGLVEGWEAAWPPRELTAALGLVTARQMAHAMRCDAEPLIQIWMRCFTPVDAKHRTKLWGGL 180
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF16_ECTSI3.910e-2139.53PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMZ7_9PHAE2.620e-1942.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7810601..7813827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size801
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1149.1prot_S-ischiensis_contig1.1149.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7810601..7813825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.7087634-CDS-S-ischiensis_contig1:7810600..78109631622815360.7087634-CDS-S-ischiensis_contig1:7810600..7810963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7810601..7810963 +
1695739659.6452775-CDS-S-ischiensis_contig1:7810600..78109631695739659.6452775-CDS-S-ischiensis_contig1:7810600..7810963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7810601..7810963 +
1622815360.7232833-CDS-S-ischiensis_contig1:7811342..78114861622815360.7232833-CDS-S-ischiensis_contig1:7811342..7811486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7811343..7811486 +
1695739659.654054-CDS-S-ischiensis_contig1:7811342..78114861695739659.654054-CDS-S-ischiensis_contig1:7811342..7811486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7811343..7811486 +
1622815360.7348566-CDS-S-ischiensis_contig1:7812506..78126321622815360.7348566-CDS-S-ischiensis_contig1:7812506..7812632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7812507..7812632 +
1695739659.662841-CDS-S-ischiensis_contig1:7812506..78126321695739659.662841-CDS-S-ischiensis_contig1:7812506..7812632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7812507..7812632 +
1622815360.7456715-CDS-S-ischiensis_contig1:7813660..78138251622815360.7456715-CDS-S-ischiensis_contig1:7813660..7813825Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7813661..7813825 +
1695739659.6720676-CDS-S-ischiensis_contig1:7813660..78138251695739659.6720676-CDS-S-ischiensis_contig1:7813660..7813825Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7813661..7813825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1149.1

>prot_S-ischiensis_contig1.1149.1 ID=prot_S-ischiensis_contig1.1149.1|Name=mRNA_S-ischiensis_contig1.1149.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=266bp
GGGSAGSQLHTSSRLSAPLTLGPLPLRLDPEDARPYWHDSVSTAGGVVAI
ARASPPRASVALNGDGGGGGGGGGRGSGVRTGTGGSFRVPLAEIPSAEVV
HEALPTEWMAEEVAVRQGVLKPPDPLPAKDAFDLATGLEAVQHFGTHTLA
EVVQAVASGPGAAELGLVEGPTCGGVVGANWPPPALTAALATVTVKQLMQ
VMRCDSEPLLQVWMRCFVPLDASARSRARGSLRFRSSARGREDEEDEDDY
EDDEEEEEEEEDEDDD
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mRNA from alignment at S-ischiensis_contig1:7810601..7813827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1149.1 ID=mRNA_S-ischiensis_contig1.1149.1|Name=mRNA_S-ischiensis_contig1.1149.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3227bp|location=Sequence derived from alignment at S-ischiensis_contig1:7810601..7813827+ (Schizocladia ischiensis KU_0333)
GGGGGGGGGAGTGCTGGCTCACAACTGCACACTTCCTCCCGCCTCTCCGC
CCCGTTGACGTTGGGCCCCTTGCCCTTAAGGCTAGACCCAGAGGACGCCC
GGCCCTACTGGCACGACAGCGTCTCGACCGCTGGCGGCGTAGTGGCCATC
GCCAGAGCCTCCCCTCCACGTGCTTCCGTCGCCCTCAACGGTGATGGTGG
TGGTGGCGGTGGTGGCGGGGGACGGGGCTCAGGTGTGCGGACGGGCACTG
GGGGGTCTTTCAGGGTGCCCTTGGCAGAGATTCCCTCGGCGGAGGTGGTG
CACGAGGCATTGCCGACGGAGTGGATGGCGGAAGAGGTGGCAGTTCGGCA
GGGGGTGCTTAAGGTGGGTTGGCGCTTGGCTACTGGCAGGGGGGATGGGG
CCGGTTGAGGCAGGGGGGAATCAGTGCGGGGTGGGGAGTGGTCAGCACTC
TCTATCTCTCTCTCTCTCCCTCTCCCCCTCTCTCTGGCTCTGTTTGCCCC
CCCCCCTCTCTCTCTCCCCCCCCCCCCCTCTCTCTCTCTCTGTCTCCCTC
CCTCCCTCCCTCTCTGTCTCTCGCATGTGCATGCGCACACCGCATCAAGC
ATGCCAACTCACCCTTCCCCCCTTCTTCCTCGCACTCTCACACGCGCACG
CACACATATATCCTCAACCTCGCCTCCCTGCCCACGTCCCAACACGCCCC
TCCCGCTCTGGCCCGTTGTCATGGTGGTGGCATGTGAGGCAGCCCCCAGA
TCCTCTGCCCGCCAAGGATGCGTTTGACCTGGCCACGGGCCTGGAGGCGG
TACAGCACTTTGGGACACACACCCTAGCCGAGGTGGTGCAAGCGGTGGCC
AGTGGGCCGGGAGCGGCCGAGCTGGGGCTTGTGGAGGTGAGCAACAAGGA
TGGTGCTGATGGGATGATGGTGGTGGCGACGGTGGTGCTGGTGGTGGCTG
ATTGGCCACACTGTACTACTGTACTGGAAGTACGACTAGTGTATGTACTG
TAGTACTCTACATGATTTCCGCTGTACTCTATGTGGTCGCTGCACTATGT
GGTGCAGTGGTACTGTGACGTAGACGGGAGGTGTGGCGGGGCAAGGGCCA
CTCGAGAAGCTCTTTGGGATGTTGTCCGCTTGACGTTGATTGAGAGGCAT
GGCTCACGCAAGCCATGCGGAGGCCTTGGGTAGAAGAAAACTGACGGTGT
TGCCCTGGGCCCCTGAAAGTACTTGGCTGCCCCTGCACACAGTGAGGGTG
CGCGGCGAACTCCCCCCTTTCGCAACAATCTCACACACGTGCGATTGTAC
CTCGTTACAATTATAATGTATGTATCACCTGCCCCCTTGCGCCCCCCTAC
TGTAGTTTCGCCCGCCTTTTCGCCCCTTTCACCCCGACCTGGCCAATAGA
ATGGGGGGGGGAAGGGCAAAAGTTCCCTGTTTTGAGCTTTGACTGGACCA
AGAATGGGCCTGGCGGGTTTGGGGCATCACCTCCAGCGGGCAGAGGTCCG
TCGTACGTCCGTACAACAAACTACTTGATTCTAGACTACCAGAATTTTGC
CCTTTCCGCCCCACTTTGGCCCAGGGCCGACGGGCGCCAGACTTTCGCCC
CCGGGGCCCAATTACTTTTGCCACGCGCCCTGCATACTGTATACTGTATC
TCTGCGGCTGTGACCGCGCACCACCCCGCCGGACATGCCCCGCCCAGATC
CTGTTTCTCATTCCACCCCCTCTCCCCCCCACGCTCCCCTTCGTCCCCCC
CTGCGCCCATCTGTACCCCAACCCCCTGTCATGCACTCACCCTCTCCCCC
TCTCCCTCATCACCCTCCTTGCCGTCCACTGCTCCTCCTCCCTCCCCTTT
TCCTCCTGCTCCTCCCCCCCCCCCCGCCGACGCACCCTCCGTTCTGGACC
ATGTAGGGACCCACGTGTGGCGGCGTGGTGGGTGCCAACTGGCCGCCCCC
GGCTCTGACGGCGGCGCTGGCCACGGTAACGGTCAAGCAGCTCATGCAAG
TCATGCGGTGTGACTCCGAGCCCCTTCTGCAGGTAAGGAGGCCGACCACA
GAAGTTTCCATTGGTTCAATCGAGCAGGCCCAGTATTTGTTGATGGCGCC
ACAGTGTGCTTCAAACTACCTATCCTCTAGAGTGCTGTACATTCGGTTGT
GCTGCAATGTTTGTCTGGGAGATGCTGCGCCCCCAGCAGACCCTTCTGGT
TTGGGGGAGTGCTATTTCCGCTGTTAGAGTACGTGGCATGGAGTTTGCGG
CGGGCCGAAAACCTGGGACATGCTTTTTGTGAGGAGTGTCTAGGTCATAC
CTCCGGTAAACTGTAGATACCACTACTGTACTCTAAGGCAGTAGCAGTAT
GGTACGTACGTGCTTCAAAGGAGCAAGTGTTTCAGCGTTGTTGGAAGGAA
GGGCGGGGCTGCTGGCTGGCGGCCGTCAGCCAAGGAGTTGGTCAGTCCGT
TGAGCCTGTGGCGGGGGGGGGGGGTCGATGGTGTCTTGAGCCATGGCACG
GTGTGTTAGATATGGGAACATGCCGTGAGGATAGTGGGGGCTTGGGTTGT
TGAGGGATGGCTTACGTGCCGAGGATTACAGTATAGGAGCGTTGCACATG
CGCCCAGGTGGAAGCAGACTACTGCGTTCTCAATGTCCATACACCAGAGT
ACACTGCTGTACAAAGCACTTGGCCGAAAGGCCTCCAAGTACTCGGCAGT
ACCAATGATGATAGAAGTAGAGCGAGTGCCACGGTTGGGCGACGGACTTC
TCAGCTTTTGAAGAGAAGCACACACACACACACACTAGTCCAACCCGACC
CCAACCTCCGCGCCAACCTGCGCTGCCTTGGTACTTGGAAGCACGTGCCC
CGAACAACTCCTTTGCTTTGAACATGTTCGCCACGGCTTGGCCGGGGAAG
CGACCGAGGAAACCAAATGCACAAATCCCAGCGCAGCCCTCTGCCGGAAT
ACCTTGCTGCCATAGGAGACAGCGGCCAGCACGCCCCCGCCCGCCCGCCA
AGCAGTTCTAATGGATAAGGATCGATTAGCATTACTCGTCGCCATGTCGA
TCGGCGGCAGGTCTGGATGAGGTGCTTCGTGCCCCTGGATGCCTCGGCAC
GGTCCCGGGCCCGGGGCTCGCTCCGCTTCCGCTCCTCGGCCCGCGGACGG
GAAGACGAGGAAGATGAGGACGACTACGAGGACGACGAGGAGGAGGAGGA
GGAGGAGGAGGACGAGGATGATGACGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7810601..7813827+

>mRNA_S-ischiensis_contig1.1149.1 ID=mRNA_S-ischiensis_contig1.1149.1|Name=mRNA_S-ischiensis_contig1.1149.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1596bp|location=Sequence derived from alignment at S-ischiensis_contig1:7810601..7813827+ (Schizocladia ischiensis KU_0333)
GGGGGGGGGAGTGCTGGCTCACAACTGCACACTTCCTCCCGCCTCTCCGC
CCCGTTGACGTTGGGCCCCTTGCCCTTAAGGCTAGACCCAGAGGACGCCC
GGCCCTACTGGCACGACAGCGTCTCGACCGCTGGCGGCGTAGTGGCCATC
GCCAGAGCCTCCCCTCCACGTGCTTCCGTCGCCCTCAACGGTGATGGTGG
TGGTGGCGGTGGTGGCGGGGGACGGGGCTCAGGTGTGCGGACGGGCACTG
GGGGGTCTTTCAGGGTGCCCTTGGCAGAGATTCCCTCGGCGGAGGTGGTG
CACGAGGCATTGCCGACGGAGTGGATGGCGGAAGAGGTGGCAGTTCGGCA
GGGGGTGCTTAAGGGGGGGGGGAGTGCTGGCTCACAACTGCACACTTCCT
CCCGCCTCTCCGCCCCGTTGACGTTGGGCCCCTTGCCCTTAAGGCTAGAC
CCAGAGGACGCCCGGCCCTACTGGCACGACAGCGTCTCGACCGCTGGCGG
CGTAGTGGCCATCGCCAGAGCCTCCCCTCCACGTGCTTCCGTCGCCCTCA
ACGGTGATGGTGGTGGTGGCGGTGGTGGCGGGGGACGGGGCTCAGGTGTG
CGGACGGGCACTGGGGGGTCTTTCAGGGTGCCCTTGGCAGAGATTCCCTC
GGCGGAGGTGGTGCACGAGGCATTGCCGACGGAGTGGATGGCGGAAGAGG
TGGCAGTTCGGCAGGGGGTGCTTAAGCCCCCAGATCCTCTGCCCGCCAAG
GATGCGTTTGACCTGGCCACGGGCCTGGAGGCGGTACAGCACTTTGGGAC
ACACACCCTAGCCGAGGTGGTGCAAGCGGTGGCCAGTGGGCCGGGAGCGG
CCGAGCTGGGGCTTGTGGAGCCCCCAGATCCTCTGCCCGCCAAGGATGCG
TTTGACCTGGCCACGGGCCTGGAGGCGGTACAGCACTTTGGGACACACAC
CCTAGCCGAGGTGGTGCAAGCGGTGGCCAGTGGGCCGGGAGCGGCCGAGC
TGGGGCTTGTGGAGGGACCCACGTGTGGCGGCGTGGTGGGTGCCAACTGG
CCGCCCCCGGCTCTGACGGCGGCGCTGGCCACGGTAACGGTCAAGCAGCT
CATGCAAGTCATGCGGTGTGACTCCGAGCCCCTTCTGCAGGGACCCACGT
GTGGCGGCGTGGTGGGTGCCAACTGGCCGCCCCCGGCTCTGACGGCGGCG
CTGGCCACGGTAACGGTCAAGCAGCTCATGCAAGTCATGCGGTGTGACTC
CGAGCCCCTTCTGCAGGTCTGGATGAGGTGCTTCGTGCCCCTGGATGCCT
CGGCACGGTCCCGGGCCCGGGGCTCGCTCCGCTTCCGCTCCTCGGCCCGC
GGACGGGAAGACGAGGAAGATGAGGACGACTACGAGGACGACGAGGAGGA
GGAGGAGGAGGAGGAGGACGAGGATGATGACGTCTGGATGAGGTGCTTCG
TGCCCCTGGATGCCTCGGCACGGTCCCGGGCCCGGGGCTCGCTCCGCTTC
CGCTCCTCGGCCCGCGGACGGGAAGACGAGGAAGATGAGGACGACTACGA
GGACGACGAGGAGGAGGAGGAGGAGGAGGAGGACGAGGATGATGAC
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