mRNA_S-ischiensis_contig1.113.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.113.1
Unique NamemRNA_S-ischiensis_contig1.113.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.113.1 vs. uniprot
Match: A0A6H5L5S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5S1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.010e-12
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  259 EPRPLSRLTWEVEDVATRFPSMAIPDHFTHAVATCVGLDTRAIGLAPLLCRTL 417
            EP PLSRLTW V D+   FP +AIPD  THA+A+   LDTRAIG+ P+LC+ L
Sbjct:  939 EPSPLSRLTWSVGDLMNSFPGLAIPDSLTHAIASWAALDTRAIGVIPMLCQPL 991
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BLAST of mRNA_S-ischiensis_contig1.113.1 vs. uniprot
Match: D7FQA6_ECTSI (DBC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.110e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  259 EPRPLSRLTWEVEDVATRFPSMAIPDHFTHAVATCVGLDTRAIGLAPLLCRTL 417
            EP PLS+LTW V D+   FP +AIPD  THA+A+   LDTRAIG+ P+LC+ L
Sbjct:  291 EPTPLSKLTWSVGDLMNSFPGLAIPDSLTHAIASWAALDTRAIGVIPMLCQPL 343
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5S1_9PHAE9.010e-1260.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQA6_ECTSI2.110e-1158.49DBC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:727946..729179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size491
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.113.1prot_S-ischiensis_contig1.113.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 727946..729179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.367827-CDS-S-ischiensis_contig1:727945..7282651622815344.367827-CDS-S-ischiensis_contig1:727945..728265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 727946..728265 +
1695739648.0953817-CDS-S-ischiensis_contig1:727945..7282651695739648.0953817-CDS-S-ischiensis_contig1:727945..728265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 727946..728265 +
1622815344.3778558-CDS-S-ischiensis_contig1:728682..7287521622815344.3778558-CDS-S-ischiensis_contig1:728682..728752Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 728683..728752 +
1695739648.17298-CDS-S-ischiensis_contig1:728682..7287521695739648.17298-CDS-S-ischiensis_contig1:728682..728752Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 728683..728752 +
1622815344.3872533-CDS-S-ischiensis_contig1:729080..7291791622815344.3872533-CDS-S-ischiensis_contig1:729080..729179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 729081..729179 +
1695739648.1909025-CDS-S-ischiensis_contig1:729080..7291791695739648.1909025-CDS-S-ischiensis_contig1:729080..729179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 729081..729179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.113.1

>prot_S-ischiensis_contig1.113.1 ID=prot_S-ischiensis_contig1.113.1|Name=mRNA_S-ischiensis_contig1.113.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
PEAKRRRTTRSSSAVGEGAGARETPSQQQPKRAAAAAAASAAPASAASAS
AVAGTTAAGGGKASGGMDGTEAGSTGEDLDAAPAGPEPRPLSRLTWEVED
VATRFPSMAIPDHFTHAVATCVGLDTRAIGLAPLLCRTLGSSVSEEGKVG
KKDGRVNGGGGTG
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mRNA from alignment at S-ischiensis_contig1:727946..729179+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.113.1 ID=mRNA_S-ischiensis_contig1.113.1|Name=mRNA_S-ischiensis_contig1.113.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1234bp|location=Sequence derived from alignment at S-ischiensis_contig1:727946..729179+ (Schizocladia ischiensis KU_0333)
CCAGAGGCAAAGCGGCGAAGGACGACGCGGAGCTCCTCGGCGGTAGGGGA
GGGGGCAGGGGCGCGAGAGACGCCTTCCCAGCAACAGCCCAAGCGGGCCG
CTGCGGCTGCCGCCGCGTCCGCCGCCCCTGCGTCCGCCGCCTCTGCCTCC
GCCGTCGCCGGGACAACGGCGGCCGGGGGGGGCAAGGCCTCAGGAGGGAT
GGACGGGACCGAGGCTGGGAGTACTGGCGAAGACTTGGACGCTGCGCCGG
CCGGGCCTGAGCCGCGCCCCCTGTCCCGCCTCACCTGGGAGGTGGAGGAC
GTGGCGACTCGCTTCCCCAGGTCAGTCTCTCAGTCGGTTTGGTTTGTTGG
TCGGCCGGTCGAGGTACCTGCGTGCGTGTGCGCGTGCATGCGTGCACGTG
GCGGTTTGATCAAATAGCACGCTCCCAAGCTTGGAAGTGCTGCCGTGCTG
AAGGACGCTGTGTGTGTGTGTGCGTGTGCCCGTGTGCAACGGCCGCAAGC
GAGTAGCATACCGCGTCCAAGCAGTGCTTCGAAGTACTGCAGTTTGTTGT
TGGGGAGGGCGCGACTGCGTTGCTGGCTGCCCGCGCTGACTGACCGTGCC
TCACCGCCGCCCCCGTCCTGCCCCCCTGCTGCCTGGTGTTTGTTTCTCCT
CCGCGGCGGGCGTGGGCTGTGTTGCCTTCAACGTGTTGCCCGGCCGGGGG
GGGGGGTGCTCGGCTTGGCTGGTGCATCATTCTTCAGCATGGCCATCCCG
GACCACTTCACGCATGCCGTGGCTACCTGTGTGGGCCTGGACACGAGGGC
GATAGGGGTGAGGATGCAGGCGTGCGCGAAAATCACACACTCACACGCGC
ACGCACACACACACACACACACAGGCATGCGCACACACGCGCGCGCACGC
AAAGACACACACACGTACTCCACACCCCCTGGACGTGAGGGCCAACACTC
GGGCGCGAGGGAAAGAACGCGGGCGCGAAACACACGCTCGCACGCACTTG
CACACGCGGCACACACACCCCCCCCGCGCGCGCGCGCGCGCGCACACACA
CACACATGTGCGCGGGCTCTCACACGCCCCCGCTCCACCACCACTGGCAA
TGTCCTCGCCACCACCACGCCCGGCTTCCCGGCAGCTGGCCCCCTTGCTC
TGCAGAACGCTGGGATCCTCCGTCTCGGAGGAGGGCAAGGTCGGCAAGAA
GGACGGTCGGGTCAATGGCGGCGGCGGCACCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:727946..729179+

>mRNA_S-ischiensis_contig1.113.1 ID=mRNA_S-ischiensis_contig1.113.1|Name=mRNA_S-ischiensis_contig1.113.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig1:727946..729179+ (Schizocladia ischiensis KU_0333)
CCAGAGGCAAAGCGGCGAAGGACGACGCGGAGCTCCTCGGCGGTAGGGGA
GGGGGCAGGGGCGCGAGAGACGCCTTCCCAGCAACAGCCCAAGCGGGCCG
CTGCGGCTGCCGCCGCGTCCGCCGCCCCTGCGTCCGCCGCCTCTGCCTCC
GCCGTCGCCGGGACAACGGCGGCCGGGGGGGGCAAGGCCTCAGGAGGGAT
GGACGGGACCGAGGCTGGGAGTACTGGCGAAGACTTGGACGCTGCGCCGG
CCGGGCCTGAGCCGCGCCCCCTGTCCCGCCTCACCTGGGAGGTGGAGGAC
GTGGCGACTCGCTTCCCCAGCCAGAGGCAAAGCGGCGAAGGACGACGCGG
AGCTCCTCGGCGGTAGGGGAGGGGGCAGGGGCGCGAGAGACGCCTTCCCA
GCAACAGCCCAAGCGGGCCGCTGCGGCTGCCGCCGCGTCCGCCGCCCCTG
CGTCCGCCGCCTCTGCCTCCGCCGTCGCCGGGACAACGGCGGCCGGGGGG
GGCAAGGCCTCAGGAGGGATGGACGGGACCGAGGCTGGGAGTACTGGCGA
AGACTTGGACGCTGCGCCGGCCGGGCCTGAGCCGCGCCCCCTGTCCCGCC
TCACCTGGGAGGTGGAGGACGTGGCGACTCGCTTCCCCAGCATGGCCATC
CCGGACCACTTCACGCATGCCGTGGCTACCTGTGTGGGCCTGGACACGAG
GGCGATAGGGCATGGCCATCCCGGACCACTTCACGCATGCCGTGGCTACC
TGTGTGGGCCTGGACACGAGGGCGATAGGGCTGGCCCCCTTGCTCTGCAG
AACGCTGGGATCCTCCGTCTCGGAGGAGGGCAAGGTCGGCAAGAAGGACG
GTCGGGTCAATGGCGGCGGCGGCACCGGGCTGGCCCCCTTGCTCTGCAGA
ACGCTGGGATCCTCCGTCTCGGAGGAGGGCAAGGTCGGCAAGAAGGACGG
TCGGGTCAATGGCGGCGGCGGCACCGGG
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