mRNA_S-ischiensis_contig1.1128.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1128.1
Unique NamemRNA_S-ischiensis_contig1.1128.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7689560..7689966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size407
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.830693-CDS-S-ischiensis_contig1:7689559..76899641622815376.830693-CDS-S-ischiensis_contig1:7689559..7689964Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7689560..7689964 +
1695739665.8432074-CDS-S-ischiensis_contig1:7689559..76899641695739665.8432074-CDS-S-ischiensis_contig1:7689559..7689964Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7689560..7689964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1128.1prot_S-ischiensis_contig1.1128.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7689560..7689964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1128.1

>prot_S-ischiensis_contig1.1128.1 ID=prot_S-ischiensis_contig1.1128.1|Name=mRNA_S-ischiensis_contig1.1128.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
PTKRLSLCTLRPGAPGRRLQRQLHTTLSTSLRVARVNTVHSPPSKAPQAA
AETYSVPMCQCCSGGPLSRLPYILKMSTLCCSLVPLPLPLGSLLAIAAGT
ARLSHPGPDPLCCLKYLPTVLQDLETQLTLTTHAY
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mRNA from alignment at S-ischiensis_contig1:7689560..7689966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1128.1 ID=mRNA_S-ischiensis_contig1.1128.1|Name=mRNA_S-ischiensis_contig1.1128.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=407bp|location=Sequence derived from alignment at S-ischiensis_contig1:7689560..7689966+ (Schizocladia ischiensis KU_0333)
CCCACCAAGCGCCTCTCGCTTTGTACTCTCAGGCCTGGAGCGCCAGGCCG
GCGGTTACAGCGGCAGCTACACACTACACTCAGCACGTCACTGCGTGTTG
CTCGTGTCAACACAGTACACAGCCCACCCTCAAAAGCGCCCCAGGCAGCG
GCAGAGACGTATTCTGTCCCAATGTGCCAGTGCTGCTCGGGCGGGCCTCT
ATCACGTCTGCCGTACATACTTAAGATGAGCACGCTGTGCTGTAGTCTCG
TACCCCTGCCTCTACCGCTTGGGTCGCTGCTGGCCATTGCCGCCGGGACC
GCAAGGCTCTCTCACCCCGGCCCAGACCCGCTGTGCTGTTTGAAGTACTT
GCCTACAGTACTGCAAGACTTAGAGACGCAACTTACACTCACCACACATG
CATATAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7689560..7689966+

>mRNA_S-ischiensis_contig1.1128.1 ID=mRNA_S-ischiensis_contig1.1128.1|Name=mRNA_S-ischiensis_contig1.1128.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig1:7689560..7689966+ (Schizocladia ischiensis KU_0333)
CCCACCAAGCGCCTCTCGCTTTGTACTCTCAGGCCTGGAGCGCCAGGCCG
GCGGTTACAGCGGCAGCTACACACTACACTCAGCACGTCACTGCGTGTTG
CTCGTGTCAACACAGTACACAGCCCACCCTCAAAAGCGCCCCAGGCAGCG
GCAGAGACGTATTCTGTCCCAATGTGCCAGTGCTGCTCGGGCGGGCCTCT
ATCACGTCTGCCGTACATACTTAAGATGAGCACGCTGTGCTGTAGTCTCG
TACCCCTGCCTCTACCGCTTGGGTCGCTGCTGGCCATTGCCGCCGGGACC
GCAAGGCTCTCTCACCCCGGCCCAGACCCGCTGTGCTGTTTGAAGTACTT
GCCTACAGTACTGCAAGACTTAGAGACGCAACTTACACTCACCACACATG
CATATCCCACCAAGCGCCTCTCGCTTTGTACTCTCAGGCCTGGAGCGCCA
GGCCGGCGGTTACAGCGGCAGCTACACACTACACTCAGCACGTCACTGCG
TGTTGCTCGTGTCAACACAGTACACAGCCCACCCTCAAAAGCGCCCCAGG
CAGCGGCAGAGACGTATTCTGTCCCAATGTGCCAGTGCTGCTCGGGCGGG
CCTCTATCACGTCTGCCGTACATACTTAAGATGAGCACGCTGTGCTGTAG
TCTCGTACCCCTGCCTCTACCGCTTGGGTCGCTGCTGGCCATTGCCGCCG
GGACCGCAAGGCTCTCTCACCCCGGCCCAGACCCGCTGTGCTGTTTGAAG
TACTTGCCTACAGTACTGCAAGACTTAGAGACGCAACTTACACTCACCAC
ACATGCATAT
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