mRNA_S-ischiensis_contig1.1122.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1122.1
Unique NamemRNA_S-ischiensis_contig1.1122.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7633183..7634054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size872
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1122.1prot_S-ischiensis_contig1.1122.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7633511..7633987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.7566395-UTR-S-ischiensis_contig1:7633182..76335101622815376.7566395-UTR-S-ischiensis_contig1:7633182..7633510Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7633183..7633510 +
1695739665.772868-UTR-S-ischiensis_contig1:7633182..76335101695739665.772868-UTR-S-ischiensis_contig1:7633182..7633510Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7633183..7633510 +
1622815376.7837481-UTR-S-ischiensis_contig1:7633987..76340541622815376.7837481-UTR-S-ischiensis_contig1:7633987..7634054Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7633988..7634054 +
1695739665.8330414-UTR-S-ischiensis_contig1:7633987..76340541695739665.8330414-UTR-S-ischiensis_contig1:7633987..7634054Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7633988..7634054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.7715845-CDS-S-ischiensis_contig1:7633510..76339871622815376.7715845-CDS-S-ischiensis_contig1:7633510..7633987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7633511..7633987 +
1695739665.8180647-CDS-S-ischiensis_contig1:7633510..76339871695739665.8180647-CDS-S-ischiensis_contig1:7633510..7633987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7633511..7633987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1122.1

>prot_S-ischiensis_contig1.1122.1 ID=prot_S-ischiensis_contig1.1122.1|Name=mRNA_S-ischiensis_contig1.1122.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=159bp
MESMDPSKPAGCSAYEQVALPPRKRKTLSAGEQVPTTASRPLVDGRNAML
TERGPLARVVSGGLFQWSGGSLGSCRFFWFALVRTWGSGLWHGHQAQFLL
TKIMFLPAELPLLLEARFSVSSSGRLVMPRWAPLSLNTASTRAIFPFSSA
TSAATSAF*
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mRNA from alignment at S-ischiensis_contig1:7633183..7634054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1122.1 ID=mRNA_S-ischiensis_contig1.1122.1|Name=mRNA_S-ischiensis_contig1.1122.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=872bp|location=Sequence derived from alignment at S-ischiensis_contig1:7633183..7634054+ (Schizocladia ischiensis KU_0333)
GCGCATAGCCGTGGGCACGGCAGCCAATCCAGTACCCGACATCTTTCTGA
AGTGCACGTATGGCCGTCCTTCGTGCTGTGTACCCTACAGTATTGCCTCT
CCTCAACAGCACAAGCAGACATGCAACATTCTGCAAGTGCGCCAGACCAC
AAGCGCCAGACCTCATGCCCAGGACACGAAAGAACGAAATACTACAACAG
TGCAGACAACTAAGCACCGAAATTGGCCCCACAGTACCTCAAGTGGGTCC
ATGAAAAACAAAAAGCCAAGATGGCGCATTCACGGAGGTGTGGACGATGG
AGGAAGCGCCATCCACATGCCTTGATCGATGGAGAGCATGGACCCTAGTA
AGCCAGCAGGGTGCAGTGCATACGAACAAGTAGCCCTTCCCCCACGAAAA
CGGAAAACCCTTAGCGCTGGGGAGCAGGTGCCCACGACGGCTTCAAGGCC
ACTGGTCGACGGCAGGAACGCAATGCTGACGGAACGGGGACCTTTAGCTC
GCGTAGTCTCCGGGGGGCTGTTTCAGTGGAGTGGTGGCTCACTTGGGTCG
TGTCGGTTCTTTTGGTTCGCTTTGGTTCGCACTTGGGGCAGCGGGCTGTG
GCATGGGCATCAGGCGCAGTTCCTTCTCACGAAGATCATGTTCCTTCCGG
CGGAGCTGCCCCTTCTCCTCGAGGCTCGCTTCTCAGTGAGCAGCTCGGGC
CGCTTGGTGATGCCGAGATGGGCCCCACTCTCGCTCAACACAGCCTCTAC
AAGAGCCATCTTCCCCTTCAGTTCCGCTACCTCTGCGGCAACCTCCGCGT
TCTGAACCTCGACCACCGCCAGCTCCCCACTCGGGGCATCGGGGTTGAAG
AGGTGGAGCTGATGACCAGTGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7633183..7634054+

>mRNA_S-ischiensis_contig1.1122.1 ID=mRNA_S-ischiensis_contig1.1122.1|Name=mRNA_S-ischiensis_contig1.1122.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=954bp|location=Sequence derived from alignment at S-ischiensis_contig1:7633183..7634054+ (Schizocladia ischiensis KU_0333)
ATGGAGAGCATGGACCCTAGTAAGCCAGCAGGGTGCAGTGCATACGAACA
AGTAGCCCTTCCCCCACGAAAACGGAAAACCCTTAGCGCTGGGGAGCAGG
TGCCCACGACGGCTTCAAGGCCACTGGTCGACGGCAGGAACGCAATGCTG
ACGGAACGGGGACCTTTAGCTCGCGTAGTCTCCGGGGGGCTGTTTCAGTG
GAGTGGTGGCTCACTTGGGTCGTGTCGGTTCTTTTGGTTCGCTTTGGTTC
GCACTTGGGGCAGCGGGCTGTGGCATGGGCATCAGGCGCAGTTCCTTCTC
ACGAAGATCATGTTCCTTCCGGCGGAGCTGCCCCTTCTCCTCGAGGCTCG
CTTCTCAGTGAGCAGCTCGGGCCGCTTGGTGATGCCGAGATGGGCCCCAC
TCTCGCTCAACACAGCCTCTACAAGAGCCATCTTCCCCTTCAGTTCCGCT
ACCTCTGCGGCAACCTCCGCGTTCTGAATGGAGAGCATGGACCCTAGTAA
GCCAGCAGGGTGCAGTGCATACGAACAAGTAGCCCTTCCCCCACGAAAAC
GGAAAACCCTTAGCGCTGGGGAGCAGGTGCCCACGACGGCTTCAAGGCCA
CTGGTCGACGGCAGGAACGCAATGCTGACGGAACGGGGACCTTTAGCTCG
CGTAGTCTCCGGGGGGCTGTTTCAGTGGAGTGGTGGCTCACTTGGGTCGT
GTCGGTTCTTTTGGTTCGCTTTGGTTCGCACTTGGGGCAGCGGGCTGTGG
CATGGGCATCAGGCGCAGTTCCTTCTCACGAAGATCATGTTCCTTCCGGC
GGAGCTGCCCCTTCTCCTCGAGGCTCGCTTCTCAGTGAGCAGCTCGGGCC
GCTTGGTGATGCCGAGATGGGCCCCACTCTCGCTCAACACAGCCTCTACA
AGAGCCATCTTCCCCTTCAGTTCCGCTACCTCTGCGGCAACCTCCGCGTT
CTGA
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