mRNA_S-ischiensis_contig1.1119.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1119.1
Unique NamemRNA_S-ischiensis_contig1.1119.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7606134..7610418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size629
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1119.1prot_S-ischiensis_contig1.1119.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7606136..7610418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.3486905-CDS-S-ischiensis_contig1:7606135..76062581622815360.3486905-CDS-S-ischiensis_contig1:7606135..7606258Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7606136..7606258 -
1695739659.5179665-CDS-S-ischiensis_contig1:7606135..76062581695739659.5179665-CDS-S-ischiensis_contig1:7606135..7606258Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7606136..7606258 -
1622815360.36022-CDS-S-ischiensis_contig1:7607210..76073511622815360.36022-CDS-S-ischiensis_contig1:7607210..7607351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7607211..7607351 -
1695739659.5275187-CDS-S-ischiensis_contig1:7607210..76073511695739659.5275187-CDS-S-ischiensis_contig1:7607210..7607351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7607211..7607351 -
1622815360.3757524-CDS-S-ischiensis_contig1:7608426..76085631622815360.3757524-CDS-S-ischiensis_contig1:7608426..7608563Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7608427..7608563 -
1695739659.536595-CDS-S-ischiensis_contig1:7608426..76085631695739659.536595-CDS-S-ischiensis_contig1:7608426..7608563Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7608427..7608563 -
1622815360.3892581-CDS-S-ischiensis_contig1:7609624..76097221622815360.3892581-CDS-S-ischiensis_contig1:7609624..7609722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7609625..7609722 -
1695739659.5468266-CDS-S-ischiensis_contig1:7609624..76097221695739659.5468266-CDS-S-ischiensis_contig1:7609624..7609722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7609625..7609722 -
1622815360.4038312-CDS-S-ischiensis_contig1:7610290..76104181622815360.4038312-CDS-S-ischiensis_contig1:7610290..7610418Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7610291..7610418 -
1695739659.557-CDS-S-ischiensis_contig1:7610290..76104181695739659.557-CDS-S-ischiensis_contig1:7610290..7610418Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7610291..7610418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1119.1

>prot_S-ischiensis_contig1.1119.1 ID=prot_S-ischiensis_contig1.1119.1|Name=mRNA_S-ischiensis_contig1.1119.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=209bp
GGERGPQGSGGGSCGAGSDDCWRSLLLVTEVMGVKACFVGPCCLSEADLK
YRLLGHLGLDRVLRDMKDQVVADNNDHPEHRNRQAVIDYTVDVFSDVSAL
YREAVKGRPQDRAKYARILGQLVATPAVLTDSSVGFALNVLADSAANPQV
VRSWVLLLAEVLGRRPVAHTAATAAQAAGGPNGGKRRRHRHRGDHRRRSG
SQSGEGADG
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mRNA from alignment at S-ischiensis_contig1:7606134..7610418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1119.1 ID=mRNA_S-ischiensis_contig1.1119.1|Name=mRNA_S-ischiensis_contig1.1119.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4285bp|location=Sequence derived from alignment at S-ischiensis_contig1:7606134..7610418- (Schizocladia ischiensis KU_0333)
GGAGGGGAGAGGGGGCCACAGGGCAGCGGGGGCGGCAGCTGCGGCGCCGG
CAGTGACGACTGTTGGCGGTCGCTGCTGTTGGTGACGGAGGTGATGGGCG
TCAAGGCCTGTTTCGTGGGGCCGTGCTGGTGAGTTTGTGCGTTGGTGGCT
GTGCGCAGGCAACGGGGTAGGGAACCTGCATGAACGAACCTTCTGTGCAT
GCGTCGCATGGCCAGGCACCTGAGCCTGGGGGCAGTGCCCCCGCTTTCCC
GCTTTCAACCCCCTGTCCTGTGCCATGCCCCCCCCCCCCGAAGAAAAACA
TGTGCTTCCTGAACTGCTGTATTGTATTGGAGTTTGCTGGAGCTAGGGCA
GGCCCGCTGCCGAGGCCTTAGTGACGTGGTCCGTTCCTCGCCGATAGTTT
TTTCTCGTATCTTAATACTGTACTCGTAGGTAGCTTATGTAGAGCTCTGT
ACGTGCAACTCGAAGCGATTGCGTTTTCCGTGTAGGCGAGCAAGCTCACC
TTTCGCGTACACCGTTCCTTGCCGCAGAGGTTATTTAGCGGCGCGGAGAC
CGCTGACCGCGCGCGCTCTGCGCCCCCCCTCTCCGTCCTTGCTGTGTGGG
CAAGGCTCCCAATCAGATGAGTGCCAAGCATGGAGCATAAAGTACTTTGG
CCATTTGCTCGCGGTGTGGTGCCCCCCCCCTGCGCTTGTGCGGCAGCCTG
AGTGAGGCGGACTTGAAGTACCGCCTCCTGGGACACCTGGGGCTGGACCG
AGTCCTCCGGGACATGAAAGACCAGGTCGTGGCCGACAATAACGGTGCGT
GCATGCTTGTACAAAGTACTTGTTAGAGTACAGTACAGTACTGTAGTTGC
GCGAGTTGGATACTTATGTTAGGCTCCGTCCCGGCGAAATTGTAGGGATG
CGTGGCCAATGGCCGAAAGGCTACCCAGCAGGGGCTGGCGGACGGTCCAA
CAAGTAGTATACTGGGCCGACGGTCGGTGGCATGCACAGGACGGGGTGTC
CCCGGTACAACATGAGTACACACAGTACAGTAGTCATGCGCGAAAGCTAC
CATATCGTTCACCCAGGGGCCACGGGCATTGCCACTGTCAGGCTACCGGG
GGCCTGGGTGGCCTCAACCCAGGTGGCTTTGTCTTAGCAGTACGGTACTT
GCAGTGGGTACAGTGCTTTGAAGAAGTGACAGAAATGAAGTACTTCCAAG
TACTCCGCTCTACTTGTGCAAGTATTGACTGTGTGTTTTCCCCTCCCTTC
CCTGTCCCCGTCATGCCCCCCATCCAACCGGCGCGGACCACTTACGCCCC
TGTTCGTGCGCCTACCCCGGCGGGGATTGTTTCCTACGCCTGGCCCGGGG
GGCCTCTCCCTGGTCGATTGCACGTTTTCCCTCGGCCTGTAGAGCTCATT
GCTCGTTGGTCTATCGGCGTACAGTTGTATGGATCTCATGAGCTGATTGG
TGTATCGTCCTCTTCGAGTACATTTTGATGCATCTGTACGAGGTATCCTA
CAGTATTGTACTGCAGTACGAGCACATTGTTGTCCTCAGCTCTCTCCCCC
TAACGCTTAGAAATACCTACGCTGCAAAACTGTTTCTTCACTTCCCACAT
CCTCCTCCTCCCCCCAGTCCTCTCATGTCTTGTCTCTCCCCCCCCCTCCC
CCCTTTTTACTGCCCCCGCCCTCCCCTTCCACCCCTCATATTATCCCCTT
CCCCTTCTCCTTCCCTTTCAACCCCCCCCTCCCCCCAACCCTCTTGCTTC
CCCCCCGCCCCGTCTTACCCATCCGCTCCTCCTTCTCTCCCCCATGCCCT
TGCCCTCCCCCCCCCACCGCTCCTCCTCTTTTTTCTCCCGATACATGGCA
CACAGACCACCCGGAGCACCGCAACCGGCAGGCTGTGATTGACTACACCG
TCGACGTCTTCAGCGATGTGTCCGCACTCTACAGAGAGGCAGTCAAGGGG
CGGCCGCAGGATAGGGCCAAGTATGCGCGGATCCTGGGGCAGGTGGGATG
GCATTTTGCCACGAAAACATTCCAGAAGGCTTATGCTGCTGCCTTGCGGG
AACCTTTGCGAGGACTGCGGCACGGTATGGCAAACTGTGGGATACGCACA
AGTACTGTATGGACTTGGCCGCCCCTCCGCCTCTGGCGGGCGGGTGGCCA
CCCCCTCCCACCCTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGTCT
CGCACGAGGCGCGGGGTCAATGGTCTCGGGACTACGACAAGCACCACGTG
AGTACATATACATGTACTGTAGGGCCGGCGCGTATATACATATATATATA
GTGTAGGGCCGTCACGCCGCAGGCAGCTTGTAAGGCCTGCCGTGCTAAAC
CCTTGGCGGACGATGGTGCACTACGTAAATCCCCGTGAGCTCTCGGTAGG
TTTGTAGGCCACCGTCCCCTGAAGTTCTGTTTTTGCCGTTCTCCGCGAAC
ATTGCGTTCCTCCGAGTGAAGGTTCTGGTGCACCCAAAACCCTCGGGAAG
AACATATTCATACTTGCCGCTCTGCTCGAGGCGCAAGTTTTTTTCCGCGG
CCCCTCCCACCTGCCCGCCCGCCCTCACACCCCCACTCACCCACCCGTCC
ACCCTCCAACGCCATAGTCCCCATTGTTTGGCGGGTTATGGGCGTGCGTT
GACATGATACTTGGAAGTATGCGGTGCAGTGCTTGCGCGCATACTTTTGA
AGTACGTACTCGAGTACGGGGATGCGTGCTTGTTGCGTGCCACTGTTTGT
TGTGTTGGAAGGAGCCTATGCACTCATTAGATGAGACGAGATGCATGTGC
GCGTTAACGTGTACTGTACTGCACCACGTGCCTGGAAGTACGCCGCGCTC
ACCCGCCCCTGCCAACACCCCGCTGTGGCATGTTCGTGCCTTGTCTGTCC
ATCGCTTTCTTTTCTCCCTCTCCGTATCCCTGTCTCCCCCCCCCCTCCCT
CCCCCCCCCCCCTCCTTCTCCATCTCCTCTCTCTCTGTGTCCCTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGGGCAT
GTGCTGTGTGTGTTCAGCTTGTGGCCACCCCGGCTGTCCTGACTGACTCC
AGCGTGGGCTTTGCCCTCAATGTCTTGGCTGACTCGGCGGCCAACCCTCA
AGTCGTGCGCTCCTGGGTGCTACTGCTGGCCGAGGTTTTGGGACGCAGAC
CTGTGGCGGTGAGCGGTTGGATGTGCTCTGTGGTGCGATGTATGTGATGT
GGTATGGTCCACTCTCAAGTATGAGTATATGGTGTGCTACAATATGAATG
GTGTGCGTACTCACGTCTCTGTGCATGCCCTGGACCCGAGCGATCCTTGT
CTTTGCTCCTTCTAGTGGATCGCTGGGCCAGCTGTAGCCGAGGCCACGCG
TCCGATTGGATGGAGCACGCCGGGTGTTTCACCGACAGTACTTTTTGGGT
TGCCATGTGATATACTTCCCAGTATGTACAGCAGCAAACACAGTAGCGTG
CATTGAGCTGCTTGTACAGTAGTGAGCGATGTGATGTGATTTGGCGTGAC
GTACTGGCATGTACTGAAGTATTATGTACTTTGTACGTACTCGAAGTACT
TTATGTACTTTTATGTACTTATGAGTACTTACAAGGCTCCGTCTCGCACG
AGGCGCGGGGTCAATGGTCTCGGGACCACGGCAAGCACCACGTGAGTACA
TATATATATACAAGGACAGCACTCTGCACTGGGCTGCTAGCTACCTCCAA
GTATGGGTGATGTCATGTGATGTATGTCCCTGCAAGTGCAGTGCACTGCG
GTGATGCCAACCTGAGGTGGGCGGACCGGCGCTATGTCGTGTCATGTCTC
AAGCAGCGCGACGTCCCACTGGCGACGCGTGGGCAATAGGCATGGTGCCA
TATCACTTACCAACTTGTCACACTTGGTCGCTTTGCTCGTGATCCCGCGC
TCGGCCGGCTCCAACCCAGCAAGACTACTCAGGAGAGAGTCAGCCCCCCC
CGGTAGCCCCCCTCAACCCATGAAAATAAAGCGACCCAACTGTTTCGACC
GAACAGCGATAACCCCCACCCCCCCAATCAGAATCGACCGGACCCTTTCC
ACCCAATCCAATCGACTAAACCCCTCTCCGGCGGCCGCTGTGGCGACGGC
CCGCCTACAGCACACGGCGGCGACGGCAGCGCAAGCTGCCGGCGGCCCCA
ACGGAGGGAAGCGCCGCCGACACCGCCACCGGGGAGACCATAGGCGGCGA
TCTGGGAGCCAGAGCGGCGAGGGGGCGGACGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7606134..7610418-

>mRNA_S-ischiensis_contig1.1119.1 ID=mRNA_S-ischiensis_contig1.1119.1|Name=mRNA_S-ischiensis_contig1.1119.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1254bp|location=Sequence derived from alignment at S-ischiensis_contig1:7606134..7610418- (Schizocladia ischiensis KU_0333)
GGAGGGGAGAGGGGGCCACAGGGCAGCGGGGGCGGCAGCTGCGGCGCCGG
CAGTGACGACTGTTGGCGGTCGCTGCTGTTGGTGACGGAGGTGATGGGCG
TCAAGGCCTGTTTCGTGGGGCCGTGCTGGGAGGGGAGAGGGGGCCACAGG
GCAGCGGGGGCGGCAGCTGCGGCGCCGGCAGTGACGACTGTTGGCGGTCG
CTGCTGTTGGTGACGGAGGTGATGGGCGTCAAGGCCTGTTTCGTGGGGCC
GTGCTGCCTGAGTGAGGCGGACTTGAAGTACCGCCTCCTGGGACACCTGG
GGCTGGACCGAGTCCTCCGGGACATGAAAGACCAGGTCGTGGCCGACAAT
AACGCCTGAGTGAGGCGGACTTGAAGTACCGCCTCCTGGGACACCTGGGG
CTGGACCGAGTCCTCCGGGACATGAAAGACCAGGTCGTGGCCGACAATAA
CGACCACCCGGAGCACCGCAACCGGCAGGCTGTGATTGACTACACCGTCG
ACGTCTTCAGCGATGTGTCCGCACTCTACAGAGAGGCAGTCAAGGGGCGG
CCGCAGGATAGGGCCAAGTATGCGCGGATCCTGGGGCAGACCACCCGGAG
CACCGCAACCGGCAGGCTGTGATTGACTACACCGTCGACGTCTTCAGCGA
TGTGTCCGCACTCTACAGAGAGGCAGTCAAGGGGCGGCCGCAGGATAGGG
CCAAGTATGCGCGGATCCTGGGGCAGCTTGTGGCCACCCCGGCTGTCCTG
ACTGACTCCAGCGTGGGCTTTGCCCTCAATGTCTTGGCTGACTCGGCGGC
CAACCCTCAAGTCGTGCGCTCCTGGGTGCTACTGCTGGCCGAGGTTTTGG
GACGCAGACCTGTGGCGCTTGTGGCCACCCCGGCTGTCCTGACTGACTCC
AGCGTGGGCTTTGCCCTCAATGTCTTGGCTGACTCGGCGGCCAACCCTCA
AGTCGTGCGCTCCTGGGTGCTACTGCTGGCCGAGGTTTTGGGACGCAGAC
CTGTGGCGCACACGGCGGCGACGGCAGCGCAAGCTGCCGGCGGCCCCAAC
GGAGGGAAGCGCCGCCGACACCGCCACCGGGGAGACCATAGGCGGCGATC
TGGGAGCCAGAGCGGCGAGGGGGCGGACGGGCACACGGCGGCGACGGCAG
CGCAAGCTGCCGGCGGCCCCAACGGAGGGAAGCGCCGCCGACACCGCCAC
CGGGGAGACCATAGGCGGCGATCTGGGAGCCAGAGCGGCGAGGGGGCGGA
CGGG
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