mRNA_S-ischiensis_contig1.1116.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1116.1
Unique NamemRNA_S-ischiensis_contig1.1116.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7587184..7588330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.3015745-CDS-S-ischiensis_contig1:7587183..75874551622815360.3015745-CDS-S-ischiensis_contig1:7587183..7587455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7587184..7587455 +
1695739659.499572-CDS-S-ischiensis_contig1:7587183..75874551695739659.499572-CDS-S-ischiensis_contig1:7587183..7587455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7587184..7587455 +
1622815360.3162253-CDS-S-ischiensis_contig1:7588285..75883281622815360.3162253-CDS-S-ischiensis_contig1:7588285..7588328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7588286..7588328 +
1695739659.5086308-CDS-S-ischiensis_contig1:7588285..75883281695739659.5086308-CDS-S-ischiensis_contig1:7588285..7588328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7588286..7588328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1116.1prot_S-ischiensis_contig1.1116.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7587184..7588328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1116.1

>prot_S-ischiensis_contig1.1116.1 ID=prot_S-ischiensis_contig1.1116.1|Name=mRNA_S-ischiensis_contig1.1116.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
APAAAAAGSGAAAGSGAATAVAVAAPKAGEAGRSFALESMSADQVGQVLE
ASGLGRYVEVWREKGVDGACLARRVGAAADPDAVLRDLGVSVRLHRMRAI
KVVEE
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mRNA from alignment at S-ischiensis_contig1:7587184..7588330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1116.1 ID=mRNA_S-ischiensis_contig1.1116.1|Name=mRNA_S-ischiensis_contig1.1116.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1147bp|location=Sequence derived from alignment at S-ischiensis_contig1:7587184..7588330+ (Schizocladia ischiensis KU_0333)
GCACCAGCAGCAGCTGCGGCTGGCAGTGGTGCGGCGGCCGGCAGCGGTGC
GGCTACGGCGGTGGCTGTAGCGGCGCCCAAGGCAGGCGAAGCCGGGCGTT
CTTTTGCGCTGGAGAGCATGTCGGCAGACCAGGTGGGCCAGGTTTTGGAG
GCGTCGGGCTTGGGCCGGTACGTGGAGGTCTGGCGTGAGAAGGGCGTGGA
CGGGGCCTGCCTGGCGAGGAGGGTTGGCGCGGCGGCGGACCCGGATGCGG
TTCTGCGGGACTTGGGCGTGAGGTGAGTGAGAGAGGCAGGGAGGGCCCTG
CCTAAGCGTTGCCGAGGCGGGCAGGTGCAGAATGTACCGTACATTGCGGT
GGAACACACGGCAGCAAAAGTACTTCAAAGTACTTGGAAGGAAGAGCTGT
ACAACTGCTCCAAAATTGAGCAAGGAAGCAGCGGGCCTCGAAAGAGGGCA
TTACTTCAAAGTATGCATGGACTACTCACCCTCTGTTCGTTTCGGGGGAT
CCATCGCCAGTGCTCTGGCGATTGTCAACAGGCGCGGTTGCCAGCCTTTT
TCCTCCCTCTGCCCGCAGACGCCCGAGCATCTGCCTCTGGATGCCCTCCC
CTGCCCTCTTCTGTGCTCTGTGTTGTATATGGTCACCCCTGTGGGCTGTG
CGGTCAACAGTCATATATATATATATATATATAGCTATGTACTGCAAGCA
GCTCCTGAGTACCTCCCTCGCCCTCCCCTCTCCTCACTAGGATTGCCCCG
GGTGACAAGCCGCGGAGAGGCTAGACATAGCCACTGCAGTCTCCCACAAA
ACGGGGCGGAGACGGTGCTCTTGCCATGAAGTCTCCCCTGCGTGAGGACC
CCTGGTGGTAGTTCATCCAAAAAACTATGTACTTCGTACTTTGAAGTTCC
ATACATAGCGCTGTGACATCCCCGCCGCCCTCCCTGCCTCCCTCGCCCCC
TCCCGCTTGCTGTATTCATTCCTTCATCGACCAACCCCTTTTTCCCCGCG
CGATTTTCGGATGCGGCCCCTCCGAATCGACCGATGCATTGTTGGCTGTG
GCCCCCTCCGGCCGCCCCCCCCCCCCCCCTCATTCGCAACAATGCACCAA
AGTGTGAGGCTTCACCGGATGAGAGCTATCAAGGTCGTTGAGGAAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7587184..7588330+

>mRNA_S-ischiensis_contig1.1116.1 ID=mRNA_S-ischiensis_contig1.1116.1|Name=mRNA_S-ischiensis_contig1.1116.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig1:7587184..7588330+ (Schizocladia ischiensis KU_0333)
GCACCAGCAGCAGCTGCGGCTGGCAGTGGTGCGGCGGCCGGCAGCGGTGC
GGCTACGGCGGTGGCTGTAGCGGCGCCCAAGGCAGGCGAAGCCGGGCGTT
CTTTTGCGCTGGAGAGCATGTCGGCAGACCAGGTGGGCCAGGTTTTGGAG
GCGTCGGGCTTGGGCCGGTACGTGGAGGTCTGGCGTGAGAAGGGCGTGGA
CGGGGCCTGCCTGGCGAGGAGGGTTGGCGCGGCGGCGGACCCGGATGCGG
TTCTGCGGGACTTGGGCGTGAGGCACCAGCAGCAGCTGCGGCTGGCAGTG
GTGCGGCGGCCGGCAGCGGTGCGGCTACGGCGGTGGCTGTAGCGGCGCCC
AAGGCAGGCGAAGCCGGGCGTTCTTTTGCGCTGGAGAGCATGTCGGCAGA
CCAGGTGGGCCAGGTTTTGGAGGCGTCGGGCTTGGGCCGGTACGTGGAGG
TCTGGCGTGAGAAGGGCGTGGACGGGGCCTGCCTGGCGAGGAGGGTTGGC
GCGGCGGCGGACCCGGATGCGGTTCTGCGGGACTTGGGCGTGAGTGTGAG
GCTTCACCGGATGAGAGCTATCAAGGTCGTTGAGGAATGTGAGGCTTCAC
CGGATGAGAGCTATCAAGGTCGTTGAGGAA
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