mRNA_S-ischiensis_contig1.1114.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1114.1
Unique NamemRNA_S-ischiensis_contig1.1114.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7579290..7580414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.1822307-CDS-S-ischiensis_contig1:7579291..75795381622815360.1822307-CDS-S-ischiensis_contig1:7579291..7579538Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7579292..7579538 -
1695739659.4822547-CDS-S-ischiensis_contig1:7579291..75795381695739659.4822547-CDS-S-ischiensis_contig1:7579291..7579538Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7579292..7579538 -
1622815360.267249-CDS-S-ischiensis_contig1:7580391..75804141622815360.267249-CDS-S-ischiensis_contig1:7580391..7580414Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7580392..7580414 -
1695739659.490838-CDS-S-ischiensis_contig1:7580391..75804141695739659.490838-CDS-S-ischiensis_contig1:7580391..7580414Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7580392..7580414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1114.1prot_S-ischiensis_contig1.1114.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7579292..7580414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1114.1

>prot_S-ischiensis_contig1.1114.1 ID=prot_S-ischiensis_contig1.1114.1|Name=mRNA_S-ischiensis_contig1.1114.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
SRIADCSRGSAMSSPSRRTAQPSTTARGRPWTSLCHRDSCTPARNTLDLS
GPRRTCSSMPPSLTLAPCTCAAPPAGREGMPRRPRRRGNM
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mRNA from alignment at S-ischiensis_contig1:7579290..7580414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1114.1 ID=mRNA_S-ischiensis_contig1.1114.1|Name=mRNA_S-ischiensis_contig1.1114.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1125bp|location=Sequence derived from alignment at S-ischiensis_contig1:7579290..7580414- (Schizocladia ischiensis KU_0333)
AGCCGTATTGCTGATTGTTCGAGGTAAGCGTTCGCATTTGACCCAGAGCA
TCGTCTGAGCCCACGTCTGACGCCCAGGCCGAGTCCACGGATGAGACATC
CGCAAACCCGGAGGGAGTGTTTGCGGCGGGATATAGCCCCACGGCTGCAG
TTGCTCACCATAGCACCACCCCCCGGCTAGGGGTGTAGATTCGAATCCCA
GAGCCTTTGGAGCGGTCGGGGTGGAGGCCTCCAGAGGAGGAAGGGACTGC
AGGGGCTGTGGACCGTGACCTCTGGGGCTTGACCTGCACCCATGACCCAT
TCAATCCGAGGCCATAGTCGCACATCATGCCCTTGCTATACGGGGGGTAC
AATCGGCACGACGCATGCGGAATGTCGGCCGATACGGTTCCCCGGCTTTT
GAATGTTTGGGCCACCACCCACCGAACCCCCTGCGCTACTCTGCCCCACC
CACCAAAGGCCTCCGCCCTTCACAGCTGCGTGCCAGCCCCCGCGAAAATG
CCGCCGCCTTGCGGATCTGAAAATTCGAGCCTGAGCCAGCTAAGTTTTGG
CATACTTGGATCCGCGACGAGTTGCCGACGACAAGGTTCGCACCCCAAAT
ATGCTGCCACAATGCAGCTTCTGTGCAACCGTGAGCGACCCGCCCGTGCA
TATGTGTGCACACTATAGTTCAAACCTAAGCTTGGAACGGGCCAGGGTGG
CCCCACTGAAGGTTCCCCGGACGAGGCCCCGTCGGCGGCCCCTCCCCGAG
GGTTTTGGAACGGTAGTGCGTTGCTTGCTCAGTTTAAACCAACACCGATC
ATTGCGTCGGGGAATGATATTTAAAACGGTAGCACACCACGGGTTTGTGC
GTGACGGCATCCTGCCCCTGCTCAAGGGGGAGTGCCATGTCATCGCCCTC
CAGGAGGACGGCGCAGCCTTCCACGACAGCTCGGGGAAGGCCATGGACGT
CTTTGTGCCACAGGGACAGCTGCACACCAGCCAGGAACACCCTGGACCTG
AGTGGGCCTCGAAGAACCTGCTCATCAATGCCACCATCACTCACCCTGGC
ACCGTGCACCTGCGCGGCCCCGCCAGCCGGGAGGGAGGGCATGCCACGGA
GGCCGCGGCGAAGAGGAAACATGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7579290..7580414-

>mRNA_S-ischiensis_contig1.1114.1 ID=mRNA_S-ischiensis_contig1.1114.1|Name=mRNA_S-ischiensis_contig1.1114.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig1:7579290..7580414- (Schizocladia ischiensis KU_0333)
AGCCGTATTGCTGATTGTTCGAGAGCCGTATTGCTGATTGTTCGAGGGGG
AGTGCCATGTCATCGCCCTCCAGGAGGACGGCGCAGCCTTCCACGACAGC
TCGGGGAAGGCCATGGACGTCTTTGTGCCACAGGGACAGCTGCACACCAG
CCAGGAACACCCTGGACCTGAGTGGGCCTCGAAGAACCTGCTCATCAATG
CCACCATCACTCACCCTGGCACCGTGCACCTGCGCGGCCCCGCCAGCCGG
GAGGGAGGGCATGCCACGGAGGCCGCGGCGAAGAGGAAACATGGGGGAGT
GCCATGTCATCGCCCTCCAGGAGGACGGCGCAGCCTTCCACGACAGCTCG
GGGAAGGCCATGGACGTCTTTGTGCCACAGGGACAGCTGCACACCAGCCA
GGAACACCCTGGACCTGAGTGGGCCTCGAAGAACCTGCTCATCAATGCCA
CCATCACTCACCCTGGCACCGTGCACCTGCGCGGCCCCGCCAGCCGGGAG
GGAGGGCATGCCACGGAGGCCGCGGCGAAGAGGAAACATG
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