mRNA_S-ischiensis_contig1.1111.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1111.1
Unique NamemRNA_S-ischiensis_contig1.1111.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7546800..7547693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size895
Cds size894
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.7113419-CDS-S-ischiensis_contig1:7546799..75476931622815376.7113419-CDS-S-ischiensis_contig1:7546799..7547693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7546800..7547693 +
1695739665.7633889-CDS-S-ischiensis_contig1:7546799..75476931695739665.7633889-CDS-S-ischiensis_contig1:7546799..7547693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7546800..7547693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1111.1prot_S-ischiensis_contig1.1111.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7546800..7547693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1111.1

>prot_S-ischiensis_contig1.1111.1 ID=prot_S-ischiensis_contig1.1111.1|Name=mRNA_S-ischiensis_contig1.1111.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=298bp
QGAVTGIIAVAVLGPGSRVTLRAPRGMRAERGEEQGTDGGFLRASSTSCS
SSLSPSPLGGAGGVQDTGGGDGDSGGAGGIVLDGTSVLELVAPPRGAGAS
AGRAAGPGTRETSSGQGVVEPTAAPPPPLDHFWCLVRGPDGRGFLQVMPD
GRAAFTGSGDPRTATRFRLEVRRGGRYIALCTEGGRYLHRRAARGGDLGG
AGAGSGSGETGFHAEVVPVAAGAQAHGGGGSEEGLAWRGCLLEVMVRTAV
AGAEEAPWAPRRVTTLSPGRPLGLCSNSSEIGEDQLRASSSLTSAPGG
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mRNA from alignment at S-ischiensis_contig1:7546800..7547693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1111.1 ID=mRNA_S-ischiensis_contig1.1111.1|Name=mRNA_S-ischiensis_contig1.1111.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig1:7546800..7547693+ (Schizocladia ischiensis KU_0333)
CAGGGGGCGGTGACGGGCATCATTGCTGTGGCAGTGCTGGGTCCTGGCTC
CCGCGTAACCTTGCGTGCACCTAGGGGCATGCGAGCGGAGCGGGGAGAGG
AACAGGGGACAGACGGCGGCTTCCTGCGTGCCTCCTCCACCTCCTGTTCC
TCCTCCTTGTCCCCCTCCCCCCTCGGCGGCGCTGGGGGGGTTCAAGACAC
TGGAGGTGGGGACGGTGACAGCGGCGGGGCCGGCGGCATCGTCCTGGACG
GCACATCCGTTTTGGAGCTGGTGGCCCCGCCGCGAGGCGCTGGGGCTTCC
GCAGGCCGCGCCGCCGGGCCTGGCACAAGGGAGACTTCGTCCGGCCAGGG
CGTGGTCGAGCCCACGGCCGCTCCGCCGCCGCCGCTGGACCACTTCTGGT
GCCTTGTGCGGGGCCCGGATGGACGGGGCTTCCTGCAGGTGATGCCTGAC
GGGCGAGCGGCCTTCACGGGGTCCGGCGATCCCCGGACCGCCACCCGCTT
CCGCCTTGAGGTCCGCCGCGGGGGGCGTTACATAGCCCTCTGCACCGAGG
GTGGCAGGTACCTGCACCGCCGTGCTGCCAGGGGAGGGGACTTGGGCGGT
GCCGGGGCGGGCTCCGGGTCAGGGGAGACCGGGTTTCACGCTGAGGTGGT
GCCCGTGGCCGCTGGCGCACAAGCCCACGGCGGCGGCGGGTCGGAGGAAG
GCCTGGCGTGGCGGGGCTGTCTCCTGGAGGTGATGGTGAGGACGGCGGTG
GCGGGGGCCGAGGAAGCCCCCTGGGCACCCCGGCGTGTGACCACGCTGTC
ACCGGGCCGGCCGCTGGGCCTGTGCAGCAACAGCAGCGAGATAGGGGAGG
ATCAGCTCCGTGCCAGCTCCTCCTTGACATCGGCACCTGGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7546800..7547693+

>mRNA_S-ischiensis_contig1.1111.1 ID=mRNA_S-ischiensis_contig1.1111.1|Name=mRNA_S-ischiensis_contig1.1111.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1788bp|location=Sequence derived from alignment at S-ischiensis_contig1:7546800..7547693+ (Schizocladia ischiensis KU_0333)
CAGGGGGCGGTGACGGGCATCATTGCTGTGGCAGTGCTGGGTCCTGGCTC
CCGCGTAACCTTGCGTGCACCTAGGGGCATGCGAGCGGAGCGGGGAGAGG
AACAGGGGACAGACGGCGGCTTCCTGCGTGCCTCCTCCACCTCCTGTTCC
TCCTCCTTGTCCCCCTCCCCCCTCGGCGGCGCTGGGGGGGTTCAAGACAC
TGGAGGTGGGGACGGTGACAGCGGCGGGGCCGGCGGCATCGTCCTGGACG
GCACATCCGTTTTGGAGCTGGTGGCCCCGCCGCGAGGCGCTGGGGCTTCC
GCAGGCCGCGCCGCCGGGCCTGGCACAAGGGAGACTTCGTCCGGCCAGGG
CGTGGTCGAGCCCACGGCCGCTCCGCCGCCGCCGCTGGACCACTTCTGGT
GCCTTGTGCGGGGCCCGGATGGACGGGGCTTCCTGCAGGTGATGCCTGAC
GGGCGAGCGGCCTTCACGGGGTCCGGCGATCCCCGGACCGCCACCCGCTT
CCGCCTTGAGGTCCGCCGCGGGGGGCGTTACATAGCCCTCTGCACCGAGG
GTGGCAGGTACCTGCACCGCCGTGCTGCCAGGGGAGGGGACTTGGGCGGT
GCCGGGGCGGGCTCCGGGTCAGGGGAGACCGGGTTTCACGCTGAGGTGGT
GCCCGTGGCCGCTGGCGCACAAGCCCACGGCGGCGGCGGGTCGGAGGAAG
GCCTGGCGTGGCGGGGCTGTCTCCTGGAGGTGATGGTGAGGACGGCGGTG
GCGGGGGCCGAGGAAGCCCCCTGGGCACCCCGGCGTGTGACCACGCTGTC
ACCGGGCCGGCCGCTGGGCCTGTGCAGCAACAGCAGCGAGATAGGGGAGG
ATCAGCTCCGTGCCAGCTCCTCCTTGACATCGGCACCTGGGGGGCAGGGG
GCGGTGACGGGCATCATTGCTGTGGCAGTGCTGGGTCCTGGCTCCCGCGT
AACCTTGCGTGCACCTAGGGGCATGCGAGCGGAGCGGGGAGAGGAACAGG
GGACAGACGGCGGCTTCCTGCGTGCCTCCTCCACCTCCTGTTCCTCCTCC
TTGTCCCCCTCCCCCCTCGGCGGCGCTGGGGGGGTTCAAGACACTGGAGG
TGGGGACGGTGACAGCGGCGGGGCCGGCGGCATCGTCCTGGACGGCACAT
CCGTTTTGGAGCTGGTGGCCCCGCCGCGAGGCGCTGGGGCTTCCGCAGGC
CGCGCCGCCGGGCCTGGCACAAGGGAGACTTCGTCCGGCCAGGGCGTGGT
CGAGCCCACGGCCGCTCCGCCGCCGCCGCTGGACCACTTCTGGTGCCTTG
TGCGGGGCCCGGATGGACGGGGCTTCCTGCAGGTGATGCCTGACGGGCGA
GCGGCCTTCACGGGGTCCGGCGATCCCCGGACCGCCACCCGCTTCCGCCT
TGAGGTCCGCCGCGGGGGGCGTTACATAGCCCTCTGCACCGAGGGTGGCA
GGTACCTGCACCGCCGTGCTGCCAGGGGAGGGGACTTGGGCGGTGCCGGG
GCGGGCTCCGGGTCAGGGGAGACCGGGTTTCACGCTGAGGTGGTGCCCGT
GGCCGCTGGCGCACAAGCCCACGGCGGCGGCGGGTCGGAGGAAGGCCTGG
CGTGGCGGGGCTGTCTCCTGGAGGTGATGGTGAGGACGGCGGTGGCGGGG
GCCGAGGAAGCCCCCTGGGCACCCCGGCGTGTGACCACGCTGTCACCGGG
CCGGCCGCTGGGCCTGTGCAGCAACAGCAGCGAGATAGGGGAGGATCAGC
TCCGTGCCAGCTCCTCCTTGACATCGGCACCTGGGGGG
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