mRNA_S-ischiensis_contig1.1110.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1110.1
Unique NamemRNA_S-ischiensis_contig1.1110.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7545317..7546789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size702
Cds size699
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.0778193-CDS-S-ischiensis_contig1:7545316..75456281622815360.0778193-CDS-S-ischiensis_contig1:7545316..7545628Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7545317..7545628 +
1695739659.4422846-CDS-S-ischiensis_contig1:7545316..75456281695739659.4422846-CDS-S-ischiensis_contig1:7545316..7545628Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7545317..7545628 +
1622815360.090072-CDS-S-ischiensis_contig1:7546400..75467871622815360.090072-CDS-S-ischiensis_contig1:7546400..7546787Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7546401..7546787 +
1695739659.452131-CDS-S-ischiensis_contig1:7546400..75467871695739659.452131-CDS-S-ischiensis_contig1:7546400..7546787Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7546401..7546787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1110.1prot_S-ischiensis_contig1.1110.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7545317..7546787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1110.1

>prot_S-ischiensis_contig1.1110.1 ID=prot_S-ischiensis_contig1.1110.1|Name=mRNA_S-ischiensis_contig1.1110.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=233bp
GGAWSPGGSPTDTQSVGAEDGSDDRPHNVHDPSDLEPVGDGRGNEAGSPP
MPEEAQTEAEAEAEAAVAVEVDEGSVTEMVGFGLKANWARTALRRNGNSV
AAAMEFCFDNIDRMDSLVAAEQEAEVRILRRETAATEASMPPPNGRQDTI
HQRPVPAGTGAGTSGSGGDDQSAAPSATIQAGLTEPVSAGGAGGGGGSGG
AGAGGEAGDPSASAAGAAAMVPVAHAEAEVEGL
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mRNA from alignment at S-ischiensis_contig1:7545317..7546789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1110.1 ID=mRNA_S-ischiensis_contig1.1110.1|Name=mRNA_S-ischiensis_contig1.1110.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1473bp|location=Sequence derived from alignment at S-ischiensis_contig1:7545317..7546789+ (Schizocladia ischiensis KU_0333)
GGAGGGGCGTGGTCGCCGGGGGGCAGTCCGACAGACACGCAGAGCGTCGG
GGCGGAGGATGGCAGCGACGACCGCCCGCACAACGTGCACGACCCCTCGG
ATCTGGAACCTGTGGGAGATGGGCGGGGGAACGAAGCTGGGTCGCCCCCG
ATGCCGGAGGAGGCCCAGACGGAGGCGGAGGCAGAGGCGGAGGCGGCTGT
GGCGGTGGAGGTGGACGAGGGCAGCGTGACGGAGATGGTGGGGTTTGGGT
TGAAGGCCAACTGGGCGCGCACAGCACTCCGCCGCAACGGCAACAGTGTT
GCGGCGGCCATGGTGAGCGGAGCGGAGGGAGGGGGGGGAGTCGGAGGTGG
CGGGGTGGGTAGGGGTGGGGTAAGTGGAGAAGGGGGTGAGGGGGGGCGAG
GGGGAGAGAGAGAGGTGGGGTATGATGGAGGGAGAGTAGGAGCGAGAGAG
GCCCAGGCACGTTTACGCAGAAAAACATGTTGCACAGATACAGAGGAATG
CCCCCTCTGTGATGTGATGGTATGGCTGCCGTGTGCATGGCCAGCACCGG
GGATACTTGGTGCTTGGCGGGTAAATTTTGAGCTATCTGCCGGCCGTCCC
AGAGACAAGGGGGGAAGAGGTGGAGGGGGGGCGGTCTCGCAGAAGCTGCC
GCAGGTTGTGCACCCAGACCTGGCTTGCGCTACGGCCGCTGGTTTGGCCC
GGTTGGTTCGTGTGTTGCACTCAACGCCCAAGTCTGTGGATACTCTGTTC
CGTGCCCCCCCCCCCCAGCCCAATGCATGCGCCCATTGCCTTGGTTTTCC
TTTGTATATGCTGCAAGCAGGGTGGATCGTGTGCGTGGGGGATGTGCTCA
AGTCTTTCATGCTCGCTGCCACATCCAGCTGCTGGAATATGTGCCCCACG
CCCACCCTTTCCCCCCTCCATGGCGTAATGTGTCTGCCCCTCCCGTCCGC
AACTCTTCCCAATCCTCTCATCTCCTCCCCTCCCCTCCCCTCCCCTCCCT
CCCCTGACCCCCCGTGGCTTGTCTCCCTGGACCTTGGCGGCGGTGATGCC
GCCCTCTCTTGACCCCCGGGTTTCGGTGGTTCAGGAATTCTGCTTTGACA
ACATCGATCGCATGGATTCACTGGTGGCCGCCGAGCAAGAGGCAGAGGTG
AGGATCCTGCGGCGGGAGACGGCGGCGACGGAGGCGTCCATGCCACCCCC
CAATGGCCGCCAGGACACCATCCACCAACGGCCTGTCCCGGCAGGCACGG
GGGCGGGCACATCCGGCAGCGGCGGCGATGACCAATCTGCTGCCCCCAGC
GCAACGATACAAGCAGGGCTCACGGAACCAGTGAGTGCTGGCGGTGCCGG
CGGCGGTGGTGGCAGCGGTGGTGCCGGCGCAGGCGGGGAGGCGGGCGACC
CTTCGGCATCGGCAGCTGGGGCGGCGGCAATGGTCCCAGTAGCCCATGCC
GAGGCGGAGGTGGAGGGCCTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7545317..7546789+

>mRNA_S-ischiensis_contig1.1110.1 ID=mRNA_S-ischiensis_contig1.1110.1|Name=mRNA_S-ischiensis_contig1.1110.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1398bp|location=Sequence derived from alignment at S-ischiensis_contig1:7545317..7546789+ (Schizocladia ischiensis KU_0333)
GGAGGGGCGTGGTCGCCGGGGGGCAGTCCGACAGACACGCAGAGCGTCGG
GGCGGAGGATGGCAGCGACGACCGCCCGCACAACGTGCACGACCCCTCGG
ATCTGGAACCTGTGGGAGATGGGCGGGGGAACGAAGCTGGGTCGCCCCCG
ATGCCGGAGGAGGCCCAGACGGAGGCGGAGGCAGAGGCGGAGGCGGCTGT
GGCGGTGGAGGTGGACGAGGGCAGCGTGACGGAGATGGTGGGGTTTGGGT
TGAAGGCCAACTGGGCGCGCACAGCACTCCGCCGCAACGGCAACAGTGTT
GCGGCGGCCATGGGAGGGGCGTGGTCGCCGGGGGGCAGTCCGACAGACAC
GCAGAGCGTCGGGGCGGAGGATGGCAGCGACGACCGCCCGCACAACGTGC
ACGACCCCTCGGATCTGGAACCTGTGGGAGATGGGCGGGGGAACGAAGCT
GGGTCGCCCCCGATGCCGGAGGAGGCCCAGACGGAGGCGGAGGCAGAGGC
GGAGGCGGCTGTGGCGGTGGAGGTGGACGAGGGCAGCGTGACGGAGATGG
TGGGGTTTGGGTTGAAGGCCAACTGGGCGCGCACAGCACTCCGCCGCAAC
GGCAACAGTGTTGCGGCGGCCATGGAATTCTGCTTTGACAACATCGATCG
CATGGATTCACTGGTGGCCGCCGAGCAAGAGGCAGAGGTGAGGATCCTGC
GGCGGGAGACGGCGGCGACGGAGGCGTCCATGCCACCCCCCAATGGCCGC
CAGGACACCATCCACCAACGGCCTGTCCCGGCAGGCACGGGGGCGGGCAC
ATCCGGCAGCGGCGGCGATGACCAATCTGCTGCCCCCAGCGCAACGATAC
AAGCAGGGCTCACGGAACCAGTGAGTGCTGGCGGTGCCGGCGGCGGTGGT
GGCAGCGGTGGTGCCGGCGCAGGCGGGGAGGCGGGCGACCCTTCGGCATC
GGCAGCTGGGGCGGCGGCAATGGTCCCAGTAGCCCATGCCGAGGCGGAGG
TGGAGGGCCTGGAATTCTGCTTTGACAACATCGATCGCATGGATTCACTG
GTGGCCGCCGAGCAAGAGGCAGAGGTGAGGATCCTGCGGCGGGAGACGGC
GGCGACGGAGGCGTCCATGCCACCCCCCAATGGCCGCCAGGACACCATCC
ACCAACGGCCTGTCCCGGCAGGCACGGGGGCGGGCACATCCGGCAGCGGC
GGCGATGACCAATCTGCTGCCCCCAGCGCAACGATACAAGCAGGGCTCAC
GGAACCAGTGAGTGCTGGCGGTGCCGGCGGCGGTGGTGGCAGCGGTGGTG
CCGGCGCAGGCGGGGAGGCGGGCGACCCTTCGGCATCGGCAGCTGGGGCG
GCGGCAATGGTCCCAGTAGCCCATGCCGAGGCGGAGGTGGAGGGCCTG
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