mRNA_S-ischiensis_contig1.111.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.111.1
Unique NamemRNA_S-ischiensis_contig1.111.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:726869..727531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size638
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.3104115-CDS-S-ischiensis_contig1:726870..7269711622815344.3104115-CDS-S-ischiensis_contig1:726870..726971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 726871..726971 -
1695739648.030966-CDS-S-ischiensis_contig1:726870..7269711695739648.030966-CDS-S-ischiensis_contig1:726870..726971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 726871..726971 -
1622815344.3264604-CDS-S-ischiensis_contig1:726996..7275311622815344.3264604-CDS-S-ischiensis_contig1:726996..727531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 726997..727531 -
1695739648.048526-CDS-S-ischiensis_contig1:726996..7275311695739648.048526-CDS-S-ischiensis_contig1:726996..727531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 726997..727531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.111.1prot_S-ischiensis_contig1.111.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 726871..727531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.111.1

>prot_S-ischiensis_contig1.111.1 ID=prot_S-ischiensis_contig1.111.1|Name=mRNA_S-ischiensis_contig1.111.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=212bp
RHCLGGRSRLASHRRRRRRLASRRHHHRRCLGGCSRLPSCCRCRRHCLGG
RSRLPSRRRSCHCRRHCLGGCSRLASRPGRRRCLGSCSRRPSRPRRRHSL
GGRSRLPSRRCWRSLGGCSHLPSSHRCHRRCIGGRSRLPSRRCRHCLGSC
SRLRSRPRRRHCQGGCSRLPSRRPSRLPTAAGDVLALAPGVAFAATTAPA
APLLMALTPGVA
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mRNA from alignment at S-ischiensis_contig1:726869..727531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.111.1 ID=mRNA_S-ischiensis_contig1.111.1|Name=mRNA_S-ischiensis_contig1.111.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=663bp|location=Sequence derived from alignment at S-ischiensis_contig1:726869..727531- (Schizocladia ischiensis KU_0333)
CGGCACTGTCTTGGCGGCCGTAGCCGTCTTGCCAGCCACCGCCGCCGCCG
CCGCCGTCTTGCCAGCCGCCGCCACCACCACCGCCGCTGCCTTGGCGGCT
GCAGCCGTCTTCCCAGCTGCTGCCGCTGCCGCCGGCACTGTCTTGGGGGC
CGCAGCCGTCTTCCCAGCCGCCGCCGCAGCTGCCACTGCCGCCGGCACTG
TCTTGGCGGCTGCAGCCGTCTTGCCAGCCGCCCCGGCCGCCGGCGCTGCC
TTGGCAGCTGCAGCCGTCGTCCCAGCCGCCCCCGCCGCCGGCACAGTCTT
GGCGGCCGCAGCCGTCTTCCCAGCCGCCGCTGCTGGCGCAGTCTTGGCGG
CTGCAGCCATCTTCCCAGCTCCCACCGCTGCCACCGGCGCTGTATTGGCG
GCCGCAGCCGTCTTCCCAGCCGCCGCTGCCGGCACTGTCTTGGCAGCTGC
AGCCGCCTTCGCAGCCGCCCCCGCCGCCGGCACTGTCAAGGCGGCTGCAG
CCGTCTTCCCAGCCGCCGCCCCAGCCGTCTTCCCAGCCGCCGCCCCAGCC
GTCTTCCCAGCCGCCGCCGGCGATGTCTTGGCTTTGGCTCCGGGGGTGGC
CTTTGCCGCTACCACCGCCCCCGCCGCCCCCTTGCTCATGGCTTTGACCC
CAGGGGTGGCCTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:726869..727531-

>mRNA_S-ischiensis_contig1.111.1 ID=mRNA_S-ischiensis_contig1.111.1|Name=mRNA_S-ischiensis_contig1.111.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1272bp|location=Sequence derived from alignment at S-ischiensis_contig1:726869..727531- (Schizocladia ischiensis KU_0333)
CGGCACTGTCTTGGCGGCCGTAGCCGTCTTGCCAGCCACCGCCGCCGCCG
CCGCCGTCTTGCCAGCCGCCGCCACCACCACCGCCGCTGCCTTGGCGGCT
GCAGCCGTCTTCCCAGCTGCTGCCGCTGCCGCCGGCACTGTCTTGGGGGC
CGCAGCCGTCTTCCCAGCCGCCGCCGCAGCTGCCACTGCCGCCGGCACTG
TCTTGGCGGCTGCAGCCGTCTTGCCAGCCGCCCCGGCCGCCGGCGCTGCC
TTGGCAGCTGCAGCCGTCGTCCCAGCCGCCCCCGCCGCCGGCACAGTCTT
GGCGGCCGCAGCCGTCTTCCCAGCCGCCGCTGCTGGCGCAGTCTTGGCGG
CTGCAGCCATCTTCCCAGCTCCCACCGCTGCCACCGGCGCTGTATTGGCG
GCCGCAGCCGTCTTCCCAGCCGCCGCTGCCGGCACTGTCTTGGCAGCTGC
AGCCGCCTTCGCAGCCGCCCCCGCCGCCGGCACTGTCAAGGCGGCTGCAG
CCGTCTTCCCAGCCGCCGCCCCAGCCGTCTTCCCACGGCACTGTCTTGGC
GGCCGTAGCCGTCTTGCCAGCCACCGCCGCCGCCGCCGCCGTCTTGCCAG
CCGCCGCCACCACCACCGCCGCTGCCTTGGCGGCTGCAGCCGTCTTCCCA
GCTGCTGCCGCTGCCGCCGGCACTGTCTTGGGGGCCGCAGCCGTCTTCCC
AGCCGCCGCCGCAGCTGCCACTGCCGCCGGCACTGTCTTGGCGGCTGCAG
CCGTCTTGCCAGCCGCCCCGGCCGCCGGCGCTGCCTTGGCAGCTGCAGCC
GTCGTCCCAGCCGCCCCCGCCGCCGGCACAGTCTTGGCGGCCGCAGCCGT
CTTCCCAGCCGCCGCTGCTGGCGCAGTCTTGGCGGCTGCAGCCATCTTCC
CAGCTCCCACCGCTGCCACCGGCGCTGTATTGGCGGCCGCAGCCGTCTTC
CCAGCCGCCGCTGCCGGCACTGTCTTGGCAGCTGCAGCCGCCTTCGCAGC
CGCCCCCGCCGCCGGCACTGTCAAGGCGGCTGCAGCCGTCTTCCCAGCCG
CCGCCCCAGCCGTCTTCCCACCGCCGCCGGCGATGTCTTGGCTTTGGCTC
CGGGGGTGGCCTTTGCCGCTACCACCGCCCCCGCCGCCCCCTTGCTCATG
GCTTTGACCCCAGGGGTGGCCCCGCCGCCGGCGATGTCTTGGCTTTGGCT
CCGGGGGTGGCCTTTGCCGCTACCACCGCCCCCGCCGCCCCCTTGCTCAT
GGCTTTGACCCCAGGGGTGGCC
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