mRNA_S-ischiensis_contig1.1100.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1100.1
Unique NamemRNA_S-ischiensis_contig1.1100.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7521958..7523789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size601
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1100.1prot_S-ischiensis_contig1.1100.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7521973..7523789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.9464235-UTR-S-ischiensis_contig1:7521957..75219721622815359.9464235-UTR-S-ischiensis_contig1:7521957..7521972Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7521958..7521972 +
1695739659.3762329-UTR-S-ischiensis_contig1:7521957..75219721695739659.3762329-UTR-S-ischiensis_contig1:7521957..7521972Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7521958..7521972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.9608588-CDS-S-ischiensis_contig1:7521972..75222451622815359.9608588-CDS-S-ischiensis_contig1:7521972..7522245Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7521973..7522245 +
1695739659.3852394-CDS-S-ischiensis_contig1:7521972..75222451695739659.3852394-CDS-S-ischiensis_contig1:7521972..7522245Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7521973..7522245 +
1622815359.9759846-CDS-S-ischiensis_contig1:7523093..75231681622815359.9759846-CDS-S-ischiensis_contig1:7523093..7523168Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7523094..7523168 +
1695739659.3946393-CDS-S-ischiensis_contig1:7523093..75231681695739659.3946393-CDS-S-ischiensis_contig1:7523093..7523168Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7523094..7523168 +
1622815359.990127-CDS-S-ischiensis_contig1:7523552..75237891622815359.990127-CDS-S-ischiensis_contig1:7523552..7523789Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7523553..7523789 +
1695739659.4053068-CDS-S-ischiensis_contig1:7523552..75237891695739659.4053068-CDS-S-ischiensis_contig1:7523552..7523789Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7523553..7523789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1100.1

>prot_S-ischiensis_contig1.1100.1 ID=prot_S-ischiensis_contig1.1100.1|Name=mRNA_S-ischiensis_contig1.1100.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=195bp
MAVVAEELALSSALLVSRVSQTGVAAAAAAGCVGVGVRMESDGDSDGTAQ
VADALPALEAVELEATLHAQLLFALRLSDTRMGRELLATPKVVRALPPLL
CHGSVRVQNAVLQLLQAGVASGSLPVALTNHAFDTLFSLSLVGSPPALLK
AGAASAASATATATATANAARPRTDSGDRPEAPLPPAAGAGMITW
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mRNA from alignment at S-ischiensis_contig1:7521958..7523789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1100.1 ID=mRNA_S-ischiensis_contig1.1100.1|Name=mRNA_S-ischiensis_contig1.1100.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1832bp|location=Sequence derived from alignment at S-ischiensis_contig1:7521958..7523789+ (Schizocladia ischiensis KU_0333)
CTTCGAACAGGCCTCATGGCGGTCGTCGCTGAGGAGCTGGCTCTGTCATC
GGCCCTGCTAGTTTCCCGCGTGTCACAGACCGGGGTCGCCGCTGCTGCTG
CTGCCGGGTGTGTGGGCGTGGGTGTCCGCATGGAGTCGGATGGGGACAGC
GATGGCACGGCGCAGGTGGCCGACGCCCTCCCTGCCCTGGAGGCGGTGGA
ACTGGAAGCGACCCTGCATGCACAACTGCTCTTCGCTCTCCGGCTCAGCG
ACACTCGCATGGGCCGGGAGCTCCTGGCTACGCCGAAGGTGTGTTCCGTT
GACGCCCCGCCAACAACCCTTTCCCTCCGGTGGTGAGCGTGCGGAGTTGT
GGATTGCTCTGCTGGTGGAGTGAGTGCGTGCTTGGAAGTACTTAGTACCA
GTTCAGTACGCCTTGTACGATAGTGTACGTACAGCAGTGTACGGTGTGCT
GGTTTTTGAGGGGCACTGGCTGGAAGTAGTACCGGTGCAGTGCACACAGC
AGTGTGGTATAAAGCGTACGGCAGATGGTCTCAAGTTCGTGGTTGGGAAC
CTCACTCAAAAGCACCGTGAATGCGGGGGAGGGAGATGTTGCGTCGTGGC
TACTGCTTACCGTCAATTGCTTGCCTCACTACCTTCACACACACACCCCG
CCCCCCCTCGCCGAGGCTGCTGCCCCTGCTCCGTTCCGCATCCCTGCCGC
CAGAGGAGCTTTGCGGGCGGGCAGAACCCAGGTTGTGGAAGGGAGCCGGG
CTTTGTTTCCACTCTTGTGCCTCTGCAGCAGTTGCAAGGGGTCTCATATG
AAGCATTAGACTTTGGATGTTGATGAAGCCTCCTTCCCCCCTCAGCAGCC
TGCTGACGGTGCACTGATCATGCCCGGCCCCCTGGAGCTGTGTGCTATAA
GTACTGCACTACAGTACTTCAAGTACCTTTGAAGTACTTTGAACTACTGT
AGTCTATGGTCCTCTACGGTAAACGGTCGGCGCAGTGCCGCGAGCGTCCT
GACAGACTTGCTTTGCACGCATAGTGCCTACAGTAGGTGGGTTGAAAGCA
GTGGCGATGGCCGTGAGACGCGCAGGACCACCGGAATAAAAAAAGCAGCC
GACTGCAGCGCCGGCCATGATTTCTGTGTTGTGCAGGTGGTGAGGGCTCT
TCCTCCTCTGCTGTGCCACGGGTCCGTCCGGGTGCAGAACGCTGTCCTCC
AGCTCCTACAGGTGCTGTAGCCCACTCTGTGCTTGTGAGAGTGCTGTTGC
AGTAGTGCGCTTCCCGAGTGGTTGAGTTGGGATCCTTTCTCTGCGGGTCC
CTCGCGCCCTCCCTCCCTCCCTGTCCCTCCCTCCCTCCATCCATCCATCG
GTCTGGCCGCCCGCCTGCCTGGCTCCTGCCTCTGTCCACCCCTCTGATAG
CACCTGCTGTTACCTGTCTTCTGTCTGTCCGTCTGCCAGCCTGCCTGCCT
GCCTGCCTGCCTGCCCACCCGCCCTCCAACCTGGGTCCACATCTGCCACC
CACGGGAACACCTGCTTTGTACGCACCCGTGATGAGCCGCCCGCCCCCCC
CTCTTGACGTCGTCGATCACTCTTGTGTCTCATCATGCTGGGCAGGCGGG
GGTGGCCAGCGGAAGCCTCCCAGTGGCCCTCACGAACCACGCCTTTGACA
CCTTGTTCTCCTTGAGCTTGGTTGGCTCGCCGCCGGCGCTGCTCAAGGCT
GGCGCCGCCAGTGCCGCCAGCGCCACTGCCACCGCCACCGCCACCGCCAA
TGCTGCCCGGCCAAGGACTGACTCAGGCGACCGCCCAGAAGCGCCCCTGC
CGCCTGCCGCGGGAGCAGGCATGATCACCTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7521958..7523789+

>mRNA_S-ischiensis_contig1.1100.1 ID=mRNA_S-ischiensis_contig1.1100.1|Name=mRNA_S-ischiensis_contig1.1100.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1170bp|location=Sequence derived from alignment at S-ischiensis_contig1:7521958..7523789+ (Schizocladia ischiensis KU_0333)
ATGGCGGTCGTCGCTGAGGAGCTGGCTCTGTCATCGGCCCTGCTAGTTTC
CCGCGTGTCACAGACCGGGGTCGCCGCTGCTGCTGCTGCCGGGTGTGTGG
GCGTGGGTGTCCGCATGGAGTCGGATGGGGACAGCGATGGCACGGCGCAG
GTGGCCGACGCCCTCCCTGCCCTGGAGGCGGTGGAACTGGAAGCGACCCT
GCATGCACAACTGCTCTTCGCTCTCCGGCTCAGCGACACTCGCATGGGCC
GGGAGCTCCTGGCTACGCCGAAGATGGCGGTCGTCGCTGAGGAGCTGGCT
CTGTCATCGGCCCTGCTAGTTTCCCGCGTGTCACAGACCGGGGTCGCCGC
TGCTGCTGCTGCCGGGTGTGTGGGCGTGGGTGTCCGCATGGAGTCGGATG
GGGACAGCGATGGCACGGCGCAGGTGGCCGACGCCCTCCCTGCCCTGGAG
GCGGTGGAACTGGAAGCGACCCTGCATGCACAACTGCTCTTCGCTCTCCG
GCTCAGCGACACTCGCATGGGCCGGGAGCTCCTGGCTACGCCGAAGGTGG
TGAGGGCTCTTCCTCCTCTGCTGTGCCACGGGTCCGTCCGGGTGCAGAAC
GCTGTCCTCCAGCTCCTACAGGTGGTGAGGGCTCTTCCTCCTCTGCTGTG
CCACGGGTCCGTCCGGGTGCAGAACGCTGTCCTCCAGCTCCTACAGGCGG
GGGTGGCCAGCGGAAGCCTCCCAGTGGCCCTCACGAACCACGCCTTTGAC
ACCTTGTTCTCCTTGAGCTTGGTTGGCTCGCCGCCGGCGCTGCTCAAGGC
TGGCGCCGCCAGTGCCGCCAGCGCCACTGCCACCGCCACCGCCACCGCCA
ATGCTGCCCGGCCAAGGACTGACTCAGGCGACCGCCCAGAAGCGCCCCTG
CCGCCTGCCGCGGGAGCAGGCATGATCACCTGGGCGGGGGTGGCCAGCGG
AAGCCTCCCAGTGGCCCTCACGAACCACGCCTTTGACACCTTGTTCTCCT
TGAGCTTGGTTGGCTCGCCGCCGGCGCTGCTCAAGGCTGGCGCCGCCAGT
GCCGCCAGCGCCACTGCCACCGCCACCGCCACCGCCAATGCTGCCCGGCC
AAGGACTGACTCAGGCGACCGCCCAGAAGCGCCCCTGCCGCCTGCCGCGG
GAGCAGGCATGATCACCTGG
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