mRNA_S-ischiensis_contig1.110.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.110.1
Unique NamemRNA_S-ischiensis_contig1.110.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:707990..708812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size824
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.7431126-CDS-S-ischiensis_contig1:707989..7084661622815363.7431126-CDS-S-ischiensis_contig1:707989..708466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 707990..708466 +
1695739661.1603491-CDS-S-ischiensis_contig1:707989..7084661695739661.1603491-CDS-S-ischiensis_contig1:707989..708466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 707990..708466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.7571578-UTR-S-ischiensis_contig1:708466..7088121622815363.7571578-UTR-S-ischiensis_contig1:708466..708812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 708467..708812 +
1695739661.1744041-UTR-S-ischiensis_contig1:708466..7088121695739661.1744041-UTR-S-ischiensis_contig1:708466..708812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 708467..708812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.110.1prot_S-ischiensis_contig1.110.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 707990..708466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.110.1

>prot_S-ischiensis_contig1.110.1 ID=prot_S-ischiensis_contig1.110.1|Name=mRNA_S-ischiensis_contig1.110.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=159bp
GAPVWRVGQREVGAAHRVAGPAVGAVGYCGRPRFSARVLVLALKFLPPER
PDVDLGHTGAHPDFVLPAAHATFPCTICSTVKHFLCTYSRYHPTNCTTKG
SSSPRLCGKRASHSTRSVYRLTGVGRQLPADMDSCVLPGPGRYEAPVPTS
STSTYIVS*
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mRNA from alignment at S-ischiensis_contig1:707990..708812+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.110.1 ID=mRNA_S-ischiensis_contig1.110.1|Name=mRNA_S-ischiensis_contig1.110.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=823bp|location=Sequence derived from alignment at S-ischiensis_contig1:707990..708812+ (Schizocladia ischiensis KU_0333)
GGAGCCCCCGTTTGGAGAGTTGGGCAGAGAGAGGTGGGAGCGGCCCACCG
TGTGGCGGGTCCAGCAGTGGGCGCTGTAGGCTACTGTGGCCGGCCCCGTT
TCTCTGCCCGTGTACTCGTACTTGCACTGAAATTTTTACCTCCGGAACGG
CCGGATGTTGATCTTGGTCATACCGGTGCCCATCCTGATTTTGTGCTGCC
TGCTGCGCACGCCACGTTTCCCTGCACCATCTGCAGCACTGTGAAGCACT
TCTTGTGTACATACTCCAGGTATCATCCAACCAACTGTACGACCAAAGGT
TCTTCCTCGCCCCGGTTATGCGGGAAGCGAGCCAGCCACTCCACTCGTTC
TGTCTACCGACTCACCGGTGTAGGCCGGCAGCTTCCCGCTGACATGGACA
GCTGCGTCCTGCCGGGCCCGGGTCGCTACGAAGCACCCGTTCCTACTTCA
AGTACCTCCACGTATATAGTCAGCTGATATGTGCCCTTCGAGCTCATAGC
CCCTTGCAAACTTGAATGGACTCAGGCGTTGTGTGTTCTCTAGGGCAGGA
AAGCCGTGGTCGTTGGTCTGTGGGGCACAAGATGAGTACATACACACCAT
TGGTCAATTTGCTCTGGTACCCTTCCGTGGTCACCTATCGTACAAGTAGC
TCGTCTACGGACCCCGCTTGGCACTTGTTCGCTGTCTTCCTTGCTACTCC
GCTGTGTGTACGCTCGTGCAGGTACGCATCATGTGGGGCCTTCGTCGTCG
CTGCTACTGCAGCTGTGTGTTCCGTTTTGTGGCTCAAGGGACCCTTTCCC
CACTGTCCCTTCCTCTTTATCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:707990..708812+

>mRNA_S-ischiensis_contig1.110.1 ID=mRNA_S-ischiensis_contig1.110.1|Name=mRNA_S-ischiensis_contig1.110.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=954bp|location=Sequence derived from alignment at S-ischiensis_contig1:707990..708812+ (Schizocladia ischiensis KU_0333)
GGAGCCCCCGTTTGGAGAGTTGGGCAGAGAGAGGTGGGAGCGGCCCACCG
TGTGGCGGGTCCAGCAGTGGGCGCTGTAGGCTACTGTGGCCGGCCCCGTT
TCTCTGCCCGTGTACTCGTACTTGCACTGAAATTTTTACCTCCGGAACGG
CCGGATGTTGATCTTGGTCATACCGGTGCCCATCCTGATTTTGTGCTGCC
TGCTGCGCACGCCACGTTTCCCTGCACCATCTGCAGCACTGTGAAGCACT
TCTTGTGTACATACTCCAGGTATCATCCAACCAACTGTACGACCAAAGGT
TCTTCCTCGCCCCGGTTATGCGGGAAGCGAGCCAGCCACTCCACTCGTTC
TGTCTACCGACTCACCGGTGTAGGCCGGCAGCTTCCCGCTGACATGGACA
GCTGCGTCCTGCCGGGCCCGGGTCGCTACGAAGCACCCGTTCCTACTTCA
AGTACCTCCACGTATATAGTCAGCTGAGGAGCCCCCGTTTGGAGAGTTGG
GCAGAGAGAGGTGGGAGCGGCCCACCGTGTGGCGGGTCCAGCAGTGGGCG
CTGTAGGCTACTGTGGCCGGCCCCGTTTCTCTGCCCGTGTACTCGTACTT
GCACTGAAATTTTTACCTCCGGAACGGCCGGATGTTGATCTTGGTCATAC
CGGTGCCCATCCTGATTTTGTGCTGCCTGCTGCGCACGCCACGTTTCCCT
GCACCATCTGCAGCACTGTGAAGCACTTCTTGTGTACATACTCCAGGTAT
CATCCAACCAACTGTACGACCAAAGGTTCTTCCTCGCCCCGGTTATGCGG
GAAGCGAGCCAGCCACTCCACTCGTTCTGTCTACCGACTCACCGGTGTAG
GCCGGCAGCTTCCCGCTGACATGGACAGCTGCGTCCTGCCGGGCCCGGGT
CGCTACGAAGCACCCGTTCCTACTTCAAGTACCTCCACGTATATAGTCAG
CTGA
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