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Homology
BLAST of mRNA_S-ischiensis_contig1.11.1 vs. uniprot
Match: A0A835ZG67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG67_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.950e-50 Identity = 98/163 (60.12%), Postives = 119/163 (73.01%), Query Frame = 2
Query: 362 RSDSMEGYLQCMGVADLAMEAQMKSEQDYESRNVISIEGNTLHIHKRTKINRFTEIFELGQEKSSPARTGTKRTTVRLREPGHPGAMVVTTSLPTVTGELRLVETRQLAEKGHVVAQELHATNLTTGTKCVTKRIWRRVPLTPEDRASLVEAVPEVPTGMPPP 850
RSD ME YLQC+ VA+LA+EAQ K E D ESRNVI+I+G IHKRTKIN TE FELG+E+ PAR+GT++T V LR+PG A+ VTT++P TG L L+ETR L +KGH QELH TNL TG KC+T+R+W RVP T EDRA+L E P + T MP P
Sbjct: 25 RSDVMEPYLQCLNVAELAIEAQAKCEADSESRNVINIDGTQFAIHKRTKINALTEHFELGKEREMPARSGTRKTMVTLRKPGDYSAIDVTTAMPISTGALHLLETRTLMDKGHTCLQELHLTNLATGAKCLTRRVWVRVPTTHEDRAALEEETPPL-TCMPGP 186
BLAST of mRNA_S-ischiensis_contig1.11.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI) HSP 1 Score: 185 bits (470), Expect = 2.360e-50 Identity = 93/151 (61.59%), Postives = 118/151 (78.15%), Query Frame = 2
Query: 362 RSDSMEGYLQCMGVADLAMEAQMKSEQDYESRNVISIEGNTLHIHKRTKINRFTEIFELGQEKSSPARTGTKRTTVRLREPGHPGAMVVTTSLPTVTGELRLVETRQLAEKGHVVAQELHATNLTTGTKCVTKRIWRRVPLTPEDRASLVE 814
RS++MEGYL+CM VADLA+EAQMK+EQD+ESRNV +IEG L IHKRTKIN FT+I+EL +EK + R+G K V L PG +V+TTS+PT G++ LVETRQL +KGHV AQELH +NLTTG +CVTKR W RV +TP D+ S+++
Sbjct: 34 RSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLPNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPVDQESVLQ 184
BLAST of mRNA_S-ischiensis_contig1.11.1 vs. uniprot
Match: A0A6H5JWZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ5_9PHAE) HSP 1 Score: 169 bits (427), Expect = 4.580e-45 Identity = 86/140 (61.43%), Postives = 108/140 (77.14%), Query Frame = 2
Query: 395 MGVADLAMEAQMKSEQDYESRNVISIEGNTLHIHKRTKINRFTEIFELGQEKSSPARTGTKRTTVRLREPGHPGAMVVTTSLPTVTGELRLVETRQLAEKGHVVAQELHATNLTTGTKCVTKRIWRRVPLTPEDRASLVE 814
M VADLA+EAQMK+EQD+ESRNV +IEG L IHKRTKIN FT+I+EL +EK + R+G K V LR PG +V+TTS+PT G++ LVETRQL +KGHV AQELH +NLTTG +CVTKR W RV +TP D+ S+++
Sbjct: 1 MNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLRNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPLDQESVLQ 140
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 2696 |
| Cds size | 486 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815379.200452-UTR-S-ischiensis_contig1:98264..100101 | 1622815379.200452-UTR-S-ischiensis_contig1:98264..100101 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 98265..100101 - |
| 1695739666.4572134-UTR-S-ischiensis_contig1:98264..100101 | 1695739666.4572134-UTR-S-ischiensis_contig1:98264..100101 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 98265..100101 - |
| 1622815379.3664806-UTR-S-ischiensis_contig1:103184..103557 | 1622815379.3664806-UTR-S-ischiensis_contig1:103184..103557 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 103185..103557 - |
| 1695739666.6210127-UTR-S-ischiensis_contig1:103184..103557 | 1695739666.6210127-UTR-S-ischiensis_contig1:103184..103557 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 103185..103557 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815379.3180552-CDS-S-ischiensis_contig1:100101..100248 | 1622815379.3180552-CDS-S-ischiensis_contig1:100101..100248 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 100102..100248 - |
| 1695739666.5631309-CDS-S-ischiensis_contig1:100101..100248 | 1695739666.5631309-CDS-S-ischiensis_contig1:100101..100248 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 100102..100248 - |
| 1622815379.332634-CDS-S-ischiensis_contig1:101606..101790 | 1622815379.332634-CDS-S-ischiensis_contig1:101606..101790 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 101607..101790 - |
| 1695739666.5850084-CDS-S-ischiensis_contig1:101606..101790 | 1695739666.5850084-CDS-S-ischiensis_contig1:101606..101790 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 101607..101790 - |
| 1622815379.3427026-CDS-S-ischiensis_contig1:102361..102462 | 1622815379.3427026-CDS-S-ischiensis_contig1:102361..102462 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 102362..102462 - |
| 1695739666.6037402-CDS-S-ischiensis_contig1:102361..102462 | 1695739666.6037402-CDS-S-ischiensis_contig1:102361..102462 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 102362..102462 - |
| 1622815379.3526223-CDS-S-ischiensis_contig1:103130..103184 | 1622815379.3526223-CDS-S-ischiensis_contig1:103130..103184 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 103131..103184 - |
| 1695739666.6125512-CDS-S-ischiensis_contig1:103130..103184 | 1695739666.6125512-CDS-S-ischiensis_contig1:103130..103184 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 103131..103184 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.11.1 >prot_S-ischiensis_contig1.11.1 ID=prot_S-ischiensis_contig1.11.1|Name=mRNA_S-ischiensis_contig1.11.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=162bp
MEGYLQCMGVADLAMEAQMKSEQDYESRNVISIEGNTLHIHKRTKINRFT EIFELGQEKSSPARTGTKRTTVRLREPGHPGAMVVTTSLPTVTGELRLVE TRQLAEKGHVVAQELHATNLTTGTKCVTKRIWRRVPLTPEDRASLVEAVP EVPTGMPPPPP* back to topmRNA from alignment at S-ischiensis_contig1:98265..103557- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig1.11.1 ID=mRNA_S-ischiensis_contig1.11.1|Name=mRNA_S-ischiensis_contig1.11.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5293bp|location=Sequence derived from alignment at S-ischiensis_contig1:98265..103557- (Schizocladia ischiensis KU_0333) CCCTGCACTTCGAAGATTACCCCTAGTCGTGCCAGCTGTGATCCCGGGAG
GGTAAAACATGACCTCTGAGGCGCCCCATCGCGCAACCGGGACTGTTGGG
GGCCTCGGATTGTTGTGTCATCATCATGGCCGGTGTGCTGTCGATTTTAT
CTGCATTCCTCACAGCGTCCATCTTTCAATACTCGCCACGAGTCGAGGTG
ATCACACATCCACCGAGAACAAGTTATGATTTCTTGTACTTGCCGGGAAT
TTTGTTCCCCGCCTCTGGTTAGAGTGAGGTAGCCGGTGCTTCTGAAAAGT
GAAAGTCACCCGCCTGCCACAAACTACCTTGGACACCATTGCCCTTGCTC
AACCCGCGTGCAGGTCTGACTCGATGGAGGGGTACCTGCAGTGCATGGGG
GTGGCGGACCTGGCAATGGAGGCACAGGTGCTTCTCCAAGTACATGTACA
GAGTCCGTGTACTGCATATAGTAGTACACTTCGAAGTAACACTTCCAAAC
TAAAAATCATCCCTTGCACCACTCTAGCTGCTGCGCCCAATCCCCCGCGC
TGATGCAGTCCATTCTCCGTTTGCTCGGGGCAGCACGCTGTGGCGTCCCT
GGCAGGAGAGCAGAAAGGGGGGGGCGGGGGGGGGGGCACGCCCCGTCGGG
CGGGCGGTGAGCAGGCAGATAGGCAGGACGTTTATTCGCTCGGGGAGGGT
GGCCCGCAGTGCCGTGAAAGACGTGGCCTGGGCATGGGCTTTGCACTCGG
TTGCCACGGGCGGCCGGGTGACGTGAACGACAGACACATCCTCGGGAAAA
GAGGAAGCCTATCTCTTTGATTCCCCCTCAAAGGAGCGGAGCGAAATCCG
CAGTTGTTTGGCGGCTTCAATGACAGTGGGTAGAGACAGACCCCCGTTTT
TACCCCTGCGTGTACACGGCTTGGCAGCAAAACAGACAATAGCTTCGGTA
GGAAGGGCAAGGGCTCGTGCCGCCGTCCACCCCGAATACACGGCGGGGCC
TACTGTTTCCTCCTGATGTGGAGGTACCGCACCCCGGCCCCTCCGCCGCC
GCCGCCGCCGCTGCCGCTGCCGCGCCACACGCCACCGACCGGCAGATGAA
ATCGGAGCAGGACTATGAGAGCCGCAACGTCATCTCCATCGAGGGCAACA
CCCTGCACATCCACAAGCGCACCAAGATCAACCGCTTCACGGAGATGTGA
GGGGCGTGCTCGTATTGTGTCTGATCCCCTTCTCAAGCCTTTCTGCCTTC
CTGCCTGCCTGCCTGCCGCCTTGTCTGCCTCTCTGTTGGCCTGTCTGGCT
GTCGTCGTGTACAGGTAACGGCGGTAGTGCGTTAAGTACACCAAAGCTAC
TCAGTGTATGGCGGGGGACCCCCCTCCTCTGCTGAACCTCGGTCCGGCAG
GGGAGCCCCCCCCCAGCCCTGACTCTCACGAGTCAGGAGCAGGGGGGTTA
TGGGCCCAACCTCCCTCGCCATGAGCGGGGGGTTGGTCCCCCCCTCCCTC
CCTGGCTTGCCAGGGGGGGAAGGGAGATTGCTCCACCATCAACGGGGCGT
GGTCTATGGCCTCGGGGCTACGGCAAGCACAACGTGAGTACATATACACT
TCGAAGTATATCACTCCAAGCTCTCACAGCTACTGTAGTAATATCAGGAA
CAACAGGGCGAGGTGCAGGCCGCGTCACTATAGACCTCAGCAGCTACTGT
AGTAGTAGACCTGTGGTTGACTTGGGCGGTTTTTTTCTCTTCCTTCTTTT
TTTTTTTGCGCCCGCAGCTTCGAGCTCGGCCAGGAGAAGAGCTCTCCGGC
GCGCACCGGGACAAAGCGGACCACCGTGCGCCTGCGGGAGCCGGGCCACC
CGGGGGCCATGGTGGTGACCACGTCGCTGCCCACGGTCACAGGGGAGCTG
CGCCTCGTGGAGACGCGGCAGCTGGCCGAGAAGGGGCATGTCGTGGCACA
GGTGTGGTGACTCGTATAAATTGTAACGAGGTACAATCGCGCGTGTGAGA
TTGACTGTTCTCGTATTAGTAGTTGTCCCATTTAAGAAATGAGTGTTCTG
GTATCCCAGTAGTGATTATCACATCAAGGAACTAAGAACAAGGAGGGGGG
GGGAAGGGGGGGGGGAGAAAGGGGGGGGCGGGGGAACAGGTGTGTTGGAA
GGTACCTACTTCCGGAAGTACTTGGTCAATGGTATCGGGACTACGGCAAG
CACAACATGAGTACATATATACATATATACTTGGAAGCATGTCCAAGTGC
TTGGGAGTATCTCGGAACGGCTGCGGGGTTAGGTTTGCTTTCTCGGTGCC
TCGTGCATGCGCAGATGGAAGTGCTGCAGTACTCTGCAGCAGGTACCGTA
TATTTCGGGTATATTGTGCCCCCCCCCCAGGTACAATTTTTCGTTTGGGA
GAACGTTACTGGACGGGTTGGGGTCCCGAATTGTCCCGAGATCCCTCGGG
CCAATTCCTCCCTGGAGGTCCGGAGGGCATTTCCTGAGTTTCCCTGAGCG
AATCCGACCAGTATCGACTATTCGGCGAGAAATGCCCTAGCGAAGTTTGG
CATGGGGGGGAAATGGCTTGAACTCTCCAAAGAGTTCAGTGCTGAGGGTG
GTGTTGCCGTGGTGAAGCGGGGACACGTTGCACACAAGACAGACGCTCAC
CACGTCCCGCGGCAGACGCCTGTACCAGCTGCGGCCAAGAAGGGGGACCC
ATTGGCCACGGGAGGTGCACATTTGTTGGGCGCTGTGTGCGTGCGGGTAA
GAGTTCAGTGCTGAGGGTGGTGTTGCCGTGGTGAAGCGGGGACACGTTGC
ACACAAGACAGACGCTCACCACGTCCCGCGGCAGACGCCTGTACCAGCTG
CGGCCAAGAAGGGGGACCCATTGGCCACGGGAGGTGCACATTTGTTGGGC
GCTGTGTGCGTGCGGGTAGGCACGGCGGCTTGCGCCGCAAGGAGCGCAAG
CTTTGTTCACGGTGCGTCGTGGAGCAGATGAGTTGGGCATTGCGGCAGCG
AGGGACGTTTTCTCAGCCGGCGCCTTGTGAGTGGTGTCGCCGAGCTGTGG
CCACGCGGGGACCCGTGGCATGCAGGGCAGATAGATGACAACAGCTCTCG
CGCCTGCCTCCCCCCCCTTCCTCCTCCTGAATCCTGCTCCTGCTCCTCTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCCCCCCCCCCTCCTCC
TCTGCCTCCTCCTCTTCCTCCTCCTCTCTCCTCCTCGCCCCTCCTGCTCC
TCCTCTTGCTGTGTCCTGCCCCCTCCCCTTGCCTCTGTAATCTGCGACGG
AACTCGCAGGAGCTGCACGCGACCAACCTCACAACGGGCACCAAGTGCGT
CACGAAGCGAATATGGCGGCGGGTGCCCTTGACTCCCGAAGACCGAGCAA
GCCTCGTAGAGGCTGTCCCGGAGGTGCCCACGGGCATGCCACCCCCCCCT
CCGTGATGACGACTGGGTAGCTGCACTGACAGCTAGCATGGGCTGCACGG
CAGACATGCGTGCCAGTGGGTCCTCATTGACTGTTACACCTTGGGCCCAC
AGGCCCAACTCTCCCGCGGGATACAGTACGGAAGGTGCAACAGTCAAGTG
GGCCACTGGCACCGGGGGGCTAACCCTTGGAGGACGACGACGCTCTGCAC
TGCTGGAGTTTATCGAGGAGTCAATGCACCACCGTCCTCCATGGGTTAGA
GTACCCAGGGAGATGTATAGTACTGGTGTGGCCGGCCCCCGAAGGAGTCC
GACAGCTTTGCGTTGTAGTGTGTGTGCTTCGAAGTACGAGCGTGCGGCAC
AACGGTACTGTACCTACTGTTAGTAGTAGTAGTTGTTGTTGTTGTAGTAG
TTGTAGTGACAATCAGATTCTGCATTTGCCAGTGCATGCGTGTGCATTGG
CTGATGGCGCCTGGTATATTAGAGTCGTGCTTGGAAGAACTTCAAGTATT
CGAGTACGATGCAGTGTGTAGGTGTTGTGAGATGTCTGCCCGCGATAATC
CTGAGGTCCCGGTGTCGGGACGGGCCCCGGAACTGGCCCGGTTATTCCTA
CTCTAAATGCACATGTGTTGGTGAGCTACGTAGACGAGTACCCGGGAGTT
CGCAGCAGTAACTGCGACTGTGCGTGAAGCAAGCCGGCAGTTCTGCTGCC
CCGTTCCAGAATTGGGACCTCGCCGGAAGCCTCCCTACACGTAGAACCTA
TTACTTGGAAGAACCCATTGCAAGGTCAGTTGCCACCTGGGAGGCTGATG
GTGCAGGGGCAAATAAGGACTGCTTGTACTACAGTGGTGCAAGTCACAAG
CACGACATTGATGCCAAGTGAGGTTTTAATTCATGATAAAGTGAGGGGCG
GGGCCTGGCCGGCGGCGCGGCGAAAGCCTGAGCAGTATACTTGGCAGTAC
GGGGCCGATGACTCGATTCGGACCGGTGGCGGCATGCACAGGACGGGTTA
CCGTGGCTCCCTGTCCGATTGAGCAACGCACGCTCCCGTGGTGAGCTCTC
AGGCTACAGGCTACAGTAACTGTGGTACCTCCAGGAAGTACTCGAGCATT
AACAGGAACAACACCGTGACAGGGCGAGGTGCAGGCCACGTCTGACTCCT
AAAGACCTCAACAGTGGCCCTTCCTCATGGCTGCCGGGGGAAATTTGTGT
GGGGTACTCGAGTAGTCCGTAACGCAGTACTCGAGTATGTGCAGGACTCT
CAGAGGCGAGCAATGAGCTTCCCCATCGAGCTTGGGCTGTGCTCGCCACT
GCGCGCGGGCTTGCCCACGGAAGTACCTGGGAGCGCTTCCGAGGAAGAAT
TCAGTTTTGAGACAGACTAGGTACAATTGTACTTCGAGGTAGTAGGTTAC
TCACTTCGGTACAGTGTACGCTCAGCCTGGTCCCCCGGCGGAGCCCGCCT
GGCTACAGTTACTCTATACCTGTAGATAGCAGTGGGGACAATCTGTAATT
AATCTATCACTATGGCATACTTGGAGAAGCATGCAATAGCTGGTAATGCC
TTGTAATGAAAAGTAAGTACTCGAGTAGGTACTGTACTCTACATGTACAG
ACAGCATCGCAAGGTCACCGTATGGCGTGCTGCTACAGTACCCCAAAGTA
CTTGGACAAGTACTTGGAAGTACTTATTGTAATAGTACATTGTTTCACCC
CGCAGGCTGTGATTGCGGCGCGCCCCTCTGCGCCAGCCGCCACCTCACAC
AACGAGTCGGAATGACTGTGCTGGATCTGAACTCTAACATCTATATACTA
CGCAGTACTATTCTCTGACGACTATGTACTGACCCGGACAGCA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig1:98265..103557- >mRNA_S-ischiensis_contig1.11.1 ID=mRNA_S-ischiensis_contig1.11.1|Name=mRNA_S-ischiensis_contig1.11.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=972bp|location=Sequence derived from alignment at S-ischiensis_contig1:98265..103557- (Schizocladia ischiensis KU_0333) ATGGAGGGGTACCTGCAGTGCATGGGGGTGGCGGACCTGGCAATGGAGGC ACAGATGGAGGGGTACCTGCAGTGCATGGGGGTGGCGGACCTGGCAATGG AGGCACAGATGAAATCGGAGCAGGACTATGAGAGCCGCAACGTCATCTCC ATCGAGGGCAACACCCTGCACATCCACAAGCGCACCAAGATCAACCGCTT CACGGAGATATGAAATCGGAGCAGGACTATGAGAGCCGCAACGTCATCTC CATCGAGGGCAACACCCTGCACATCCACAAGCGCACCAAGATCAACCGCT TCACGGAGATCTTCGAGCTCGGCCAGGAGAAGAGCTCTCCGGCGCGCACC GGGACAAAGCGGACCACCGTGCGCCTGCGGGAGCCGGGCCACCCGGGGGC CATGGTGGTGACCACGTCGCTGCCCACGGTCACAGGGGAGCTGCGCCTCG TGGAGACGCGGCAGCTGGCCGAGAAGGGGCATGTCGTGGCACAGCTTCGA GCTCGGCCAGGAGAAGAGCTCTCCGGCGCGCACCGGGACAAAGCGGACCA CCGTGCGCCTGCGGGAGCCGGGCCACCCGGGGGCCATGGTGGTGACCACG TCGCTGCCCACGGTCACAGGGGAGCTGCGCCTCGTGGAGACGCGGCAGCT GGCCGAGAAGGGGCATGTCGTGGCACAGGAGCTGCACGCGACCAACCTCA CAACGGGCACCAAGTGCGTCACGAAGCGAATATGGCGGCGGGTGCCCTTG ACTCCCGAAGACCGAGCAAGCCTCGTAGAGGCTGTCCCGGAGGTGCCCAC GGGCATGCCACCCCCCCCTCCGTGAGAGCTGCACGCGACCAACCTCACAA CGGGCACCAAGTGCGTCACGAAGCGAATATGGCGGCGGGTGCCCTTGACT CCCGAAGACCGAGCAAGCCTCGTAGAGGCTGTCCCGGAGGTGCCCACGGG CATGCCACCCCCCCCTCCGTGA back to top
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