mRNA_S-ischiensis_contig1.1092.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1092.1
Unique NamemRNA_S-ischiensis_contig1.1092.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7513269..7513798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size190
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1092.1prot_S-ischiensis_contig1.1092.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7513290..7513798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.7766593-UTR-S-ischiensis_contig1:7513268..75132891622815359.7766593-UTR-S-ischiensis_contig1:7513268..7513289Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7513269..7513289 +
1695739659.311596-UTR-S-ischiensis_contig1:7513268..75132891695739659.311596-UTR-S-ischiensis_contig1:7513268..7513289Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7513269..7513289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.7928307-CDS-S-ischiensis_contig1:7513289..75133221622815359.7928307-CDS-S-ischiensis_contig1:7513289..7513322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7513290..7513322 +
1695739659.323061-CDS-S-ischiensis_contig1:7513289..75133221695739659.323061-CDS-S-ischiensis_contig1:7513289..7513322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7513290..7513322 +
1622815359.8082833-CDS-S-ischiensis_contig1:7513663..75137981622815359.8082833-CDS-S-ischiensis_contig1:7513663..7513798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7513664..7513798 +
1695739659.3343332-CDS-S-ischiensis_contig1:7513663..75137981695739659.3343332-CDS-S-ischiensis_contig1:7513663..7513798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7513664..7513798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1092.1

>prot_S-ischiensis_contig1.1092.1 ID=prot_S-ischiensis_contig1.1092.1|Name=mRNA_S-ischiensis_contig1.1092.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=56bp
MCDWAPLGPGLHRFQVTILSRGVPRTRGSAHAREEQQEEEEGAEEATSAT
DTMGPG
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mRNA from alignment at S-ischiensis_contig1:7513269..7513798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1092.1 ID=mRNA_S-ischiensis_contig1.1092.1|Name=mRNA_S-ischiensis_contig1.1092.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=530bp|location=Sequence derived from alignment at S-ischiensis_contig1:7513269..7513798+ (Schizocladia ischiensis KU_0333)
GGCGGGGATGATTCTGCAGCAATGTGCGACTGGGCCCCACTAGGACCAGG
GCTGGTAAGGAGTACTGAAGCAGGGGTGGGGGGGCAGGATCAGGGCGGGG
GGGGCAGGAGCAGATGCTAAGTAAGCAGCTGCCGTTTGCTGCCGTGGTCT
CAAGCCAGGAACACACTTCAAAGTTGATCTGTTCCACCCCTTTGAATTCA
CACGCCCCCGCCCTCAGCCTCATGAACTAGGCTCGCTTGCACGGGCCTCC
TCGGTGCACAGGCCCCGACGTTTCTCCCAGTTTCGGGACCCCTCTCCCCT
CACCTTGCTTCAACCTCTGTCACACACACCCTCCCCCCCTTCCCGTCCCC
TTCCCTCCCCCGACCACCCCCCCCCACTCCCTCCGCCGCCGGCAGCACCG
CTTCCAGGTGACAATCTTGTCCCGAGGCGTCCCCCGCACACGGGGCAGCG
CTCACGCCCGTGAGGAGCAGCAGGAGGAGGAGGAGGGGGCGGAAGAGGCC
ACCTCCGCAACTGACACCATGGGACCTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7513269..7513798+

>mRNA_S-ischiensis_contig1.1092.1 ID=mRNA_S-ischiensis_contig1.1092.1|Name=mRNA_S-ischiensis_contig1.1092.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=336bp|location=Sequence derived from alignment at S-ischiensis_contig1:7513269..7513798+ (Schizocladia ischiensis KU_0333)
ATGTGCGACTGGGCCCCACTAGGACCAGGGCTGATGTGCGACTGGGCCCC
ACTAGGACCAGGGCTGCACCGCTTCCAGGTGACAATCTTGTCCCGAGGCG
TCCCCCGCACACGGGGCAGCGCTCACGCCCGTGAGGAGCAGCAGGAGGAG
GAGGAGGGGGCGGAAGAGGCCACCTCCGCAACTGACACCATGGGACCTGG
GCACCGCTTCCAGGTGACAATCTTGTCCCGAGGCGTCCCCCGCACACGGG
GCAGCGCTCACGCCCGTGAGGAGCAGCAGGAGGAGGAGGAGGGGGCGGAA
GAGGCCACCTCCGCAACTGACACCATGGGACCTGGG
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