mRNA_S-ischiensis_contig1.1090.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1090.1
Unique NamemRNA_S-ischiensis_contig1.1090.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7512057..7512555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.1846979-CDS-S-ischiensis_contig1:7512056..75125541622815376.1846979-CDS-S-ischiensis_contig1:7512056..7512554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7512057..7512554 +
1695739665.612001-CDS-S-ischiensis_contig1:7512056..75125541695739665.612001-CDS-S-ischiensis_contig1:7512056..7512554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7512057..7512554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1090.1prot_S-ischiensis_contig1.1090.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7512057..7512554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1090.1

>prot_S-ischiensis_contig1.1090.1 ID=prot_S-ischiensis_contig1.1090.1|Name=mRNA_S-ischiensis_contig1.1090.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=166bp
DRGSAGANERRRASCRSPRLLLLGALLHRLSQPQRALQLLETLAAIPSPA
GGGSLGGGDGACGHILPSSLPAMFQLFDSYCAWATTAPATGQGALEGGAV
GATTTVNPAATAEEAATMAAAAEVALLRVHHGLLVWLAGHGVNDGATPAV
AAAAGTPAARRLVLRY
back to top

mRNA from alignment at S-ischiensis_contig1:7512057..7512555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1090.1 ID=mRNA_S-ischiensis_contig1.1090.1|Name=mRNA_S-ischiensis_contig1.1090.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=499bp|location=Sequence derived from alignment at S-ischiensis_contig1:7512057..7512555+ (Schizocladia ischiensis KU_0333)
GACAGAGGCAGCGCGGGTGCCAATGAGCGGCGGCGGGCTTCGTGCCGTTC
CCCCCGCCTGCTGCTGCTGGGGGCGCTGCTGCACAGGCTGTCACAGCCGC
AGCGGGCGCTTCAGCTGCTCGAGACTCTTGCTGCAATCCCCAGCCCGGCT
GGTGGTGGCAGCCTTGGCGGTGGTGATGGCGCTTGCGGCCATATTTTGCC
GTCATCGCTTCCAGCCATGTTCCAGCTGTTCGACTCTTACTGCGCGTGGG
CGACCACCGCTCCTGCCACCGGGCAGGGGGCATTGGAGGGAGGCGCTGTT
GGGGCGACCACCACCGTGAACCCCGCCGCCACCGCGGAAGAGGCAGCAAC
GATGGCGGCGGCGGCCGAGGTGGCCCTACTGCGGGTGCACCACGGCTTGC
TTGTCTGGCTGGCCGGGCACGGGGTCAACGACGGGGCCACCCCTGCCGTG
GCAGCTGCCGCAGGGACCCCCGCCGCGCGCCGCCTCGTGCTGCGCTACC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7512057..7512555+

>mRNA_S-ischiensis_contig1.1090.1 ID=mRNA_S-ischiensis_contig1.1090.1|Name=mRNA_S-ischiensis_contig1.1090.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=996bp|location=Sequence derived from alignment at S-ischiensis_contig1:7512057..7512555+ (Schizocladia ischiensis KU_0333)
GACAGAGGCAGCGCGGGTGCCAATGAGCGGCGGCGGGCTTCGTGCCGTTC
CCCCCGCCTGCTGCTGCTGGGGGCGCTGCTGCACAGGCTGTCACAGCCGC
AGCGGGCGCTTCAGCTGCTCGAGACTCTTGCTGCAATCCCCAGCCCGGCT
GGTGGTGGCAGCCTTGGCGGTGGTGATGGCGCTTGCGGCCATATTTTGCC
GTCATCGCTTCCAGCCATGTTCCAGCTGTTCGACTCTTACTGCGCGTGGG
CGACCACCGCTCCTGCCACCGGGCAGGGGGCATTGGAGGGAGGCGCTGTT
GGGGCGACCACCACCGTGAACCCCGCCGCCACCGCGGAAGAGGCAGCAAC
GATGGCGGCGGCGGCCGAGGTGGCCCTACTGCGGGTGCACCACGGCTTGC
TTGTCTGGCTGGCCGGGCACGGGGTCAACGACGGGGCCACCCCTGCCGTG
GCAGCTGCCGCAGGGACCCCCGCCGCGCGCCGCCTCGTGCTGCGCTACGA
CAGAGGCAGCGCGGGTGCCAATGAGCGGCGGCGGGCTTCGTGCCGTTCCC
CCCGCCTGCTGCTGCTGGGGGCGCTGCTGCACAGGCTGTCACAGCCGCAG
CGGGCGCTTCAGCTGCTCGAGACTCTTGCTGCAATCCCCAGCCCGGCTGG
TGGTGGCAGCCTTGGCGGTGGTGATGGCGCTTGCGGCCATATTTTGCCGT
CATCGCTTCCAGCCATGTTCCAGCTGTTCGACTCTTACTGCGCGTGGGCG
ACCACCGCTCCTGCCACCGGGCAGGGGGCATTGGAGGGAGGCGCTGTTGG
GGCGACCACCACCGTGAACCCCGCCGCCACCGCGGAAGAGGCAGCAACGA
TGGCGGCGGCGGCCGAGGTGGCCCTACTGCGGGTGCACCACGGCTTGCTT
GTCTGGCTGGCCGGGCACGGGGTCAACGACGGGGCCACCCCTGCCGTGGC
AGCTGCCGCAGGGACCCCCGCCGCGCGCCGCCTCGTGCTGCGCTAC
back to top