mRNA_S-ischiensis_contig1.1087.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1087.1
Unique NamemRNA_S-ischiensis_contig1.1087.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7508226..7509595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.6708949-CDS-S-ischiensis_contig1:7508225..75082911622815359.6708949-CDS-S-ischiensis_contig1:7508225..7508291Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7508226..7508291 +
1695739659.2662659-CDS-S-ischiensis_contig1:7508225..75082911695739659.2662659-CDS-S-ischiensis_contig1:7508225..7508291Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7508226..7508291 +
1622815359.6891325-CDS-S-ischiensis_contig1:7509334..75095951622815359.6891325-CDS-S-ischiensis_contig1:7509334..7509595Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7509335..7509595 +
1695739659.2769556-CDS-S-ischiensis_contig1:7509334..75095951695739659.2769556-CDS-S-ischiensis_contig1:7509334..7509595Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7509335..7509595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1087.1prot_S-ischiensis_contig1.1087.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7508226..7509595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1087.1

>prot_S-ischiensis_contig1.1087.1 ID=prot_S-ischiensis_contig1.1087.1|Name=mRNA_S-ischiensis_contig1.1087.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
DGSDSDDARGPREMLACLPHVQVLGAGIFGRHGRGGCRVRGRFYPNSVCL
APRSAPGGGGGDPGPGVAAVRYQLSPGGYGFFDCDVAVADPVLSAASAAP
QWPEEGREE
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mRNA from alignment at S-ischiensis_contig1:7508226..7509595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1087.1 ID=mRNA_S-ischiensis_contig1.1087.1|Name=mRNA_S-ischiensis_contig1.1087.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1370bp|location=Sequence derived from alignment at S-ischiensis_contig1:7508226..7509595+ (Schizocladia ischiensis KU_0333)
GATGGAAGCGATAGTGATGACGCGAGAGGCCCGAGGGAGATGCTGGCGTG
TCTGCCTCATGTCCAGGTGGGCAAGGGGAGGATGCAAGACATTGGGTTCT
GCCATTGTGCCAATGGCCTGTGCTCCGGCGCCCGTGTCTTGCCCGCCCCA
CCATTCCTCCCGCACATCCAAACCACACCGGGGCTGCATCTCGGCCACCG
CCTCGTGCTGGAGCTGTTGCCTTCATCACGTACTCGTACAGTACCAGCCA
GATGTTGCCTGCTCAACGCGCCTTGGGTAGTACGTGACGCTCACGTAGCC
TTGGGTACTGGACAATACTACAGCACTGCTTTCCTACAGTCTGGTAGAAT
ATGTACGAGTACAGTATATCTGCTCCGTCTCGATCGAGGCGCGCGGTCAA
TGGTCTCGGGACTACGGCAGGCTCAACGTGAGTATATATATCCATGGACT
TCGCCACCCCTCCGCCTCTGGCGGTGCGGTGGCCACCCCCTCCCACCCTG
GCTCTGCCACCTGGGGGAGGGAGGGGGCCTCTCCGTCTCGATCGAGGCGC
GTGGTCAATGGTCTCGGGACTACGGCAGGAACAACGTGAGTACATATACA
TCTGCTGTACTTCGCAGTACTCGGGACGGGTACTACTGCACAACACTGCT
CCGTCCCGGCAGAGGCGTGTGGACTGTTCTTGGGACCCACTGCAAGCACA
ACGTGAGTGCTTGAAGGGCTTCCGAAGGGGAAGTGCACATGTGTACTTGT
GCAGTACGGTACTAAGTAGTGCCGTGGTTCTCCAAGAGACAGAGCACAGC
TGTTCTATCTGCAACGCCGCCACTGGCTGCTGCGAAGCCTTGCACGAGCG
CGGGGACTGGCTGCTTCTGACGCGGTCCCCTCCCCCCCCCTCCCCCTCCT
CCTCCCCCTGCCCCTCCTCCTTCGCCCTCCTCTGCCTCCTTTTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTCCTCCTGCTCCTCCTGCT
CCTCCTCGTCCTCCTCCTCGTCCTCCTCCTCCTCCCCCTCCCCCttCCCC
CCCCCTCCCCATCCTGCTCCTCCTCCACCGCCACCACCGCCGCCGCTCTC
CGTCGCCAGGTCCTGGGGGCCGGCATCTTCGGTCGCCACGGCCGCGGCGG
CTGCCGCGTCCGGGGGCGGTTCTATCCCAACTCTGTCTGCCTTGCACCGA
GGTCCGCACCCGGTGGCGGCGGTGGCGATCCTGGTCCAGGGGTGGCGGCC
GTGCGTTACCAACTCTCTCCAGGAGGGTACGGGTTCTTTGACTGTGACGT
GGCAGTCGCGGACCCGGTCCTCTCTGCTGCAAGTGCCGCCCCGCAGTGGC
CGGAGGAAGGGCGGGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7508226..7509595+

>mRNA_S-ischiensis_contig1.1087.1 ID=mRNA_S-ischiensis_contig1.1087.1|Name=mRNA_S-ischiensis_contig1.1087.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig1:7508226..7509595+ (Schizocladia ischiensis KU_0333)
GATGGAAGCGATAGTGATGACGCGAGAGGCCCGAGGGAGATGCTGGCGTG
TCTGCCTCATGTCCAGGATGGAAGCGATAGTGATGACGCGAGAGGCCCGA
GGGAGATGCTGGCGTGTCTGCCTCATGTCCAGGTCCTGGGGGCCGGCATC
TTCGGTCGCCACGGCCGCGGCGGCTGCCGCGTCCGGGGGCGGTTCTATCC
CAACTCTGTCTGCCTTGCACCGAGGTCCGCACCCGGTGGCGGCGGTGGCG
ATCCTGGTCCAGGGGTGGCGGCCGTGCGTTACCAACTCTCTCCAGGAGGG
TACGGGTTCTTTGACTGTGACGTGGCAGTCGCGGACCCGGTCCTCTCTGC
TGCAAGTGCCGCCCCGCAGTGGCCGGAGGAAGGGCGGGAGGAGGTCCTGG
GGGCCGGCATCTTCGGTCGCCACGGCCGCGGCGGCTGCCGCGTCCGGGGG
CGGTTCTATCCCAACTCTGTCTGCCTTGCACCGAGGTCCGCACCCGGTGG
CGGCGGTGGCGATCCTGGTCCAGGGGTGGCGGCCGTGCGTTACCAACTCT
CTCCAGGAGGGTACGGGTTCTTTGACTGTGACGTGGCAGTCGCGGACCCG
GTCCTCTCTGCTGCAAGTGCCGCCCCGCAGTGGCCGGAGGAAGGGCGGGA
GGAG
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