mRNA_S-ischiensis_contig1.1085.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1085.1
Unique NamemRNA_S-ischiensis_contig1.1085.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7503862..7505188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size490
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.5272179-CDS-S-ischiensis_contig1:7503861..75040861622815359.5272179-CDS-S-ischiensis_contig1:7503861..7504086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7503862..7504086 +
1695739659.2249222-CDS-S-ischiensis_contig1:7503861..75040861695739659.2249222-CDS-S-ischiensis_contig1:7503861..7504086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7503862..7504086 +
1622815359.5405982-CDS-S-ischiensis_contig1:7504923..75051871622815359.5405982-CDS-S-ischiensis_contig1:7504923..7505187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7504924..7505187 +
1695739659.2343209-CDS-S-ischiensis_contig1:7504923..75051871695739659.2343209-CDS-S-ischiensis_contig1:7504923..7505187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7504924..7505187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1085.1prot_S-ischiensis_contig1.1085.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7503862..7505187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1085.1

>prot_S-ischiensis_contig1.1085.1 ID=prot_S-ischiensis_contig1.1085.1|Name=mRNA_S-ischiensis_contig1.1085.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
VPGEQRGWSGSEGRRHLVAQDPRGFVPSTSPGRRYAPSRPVQELGLAMLV
SFLEVTDPASCPVQLIDHLSQQLLQTGHGALFRELSQRAPPWPERELHLR
ALHLAGGARCHSSTTARSRPSPEGYRPERVLHRDSLYWCSVQGLPETDWS
VAFRRPPQRGGRG
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mRNA from alignment at S-ischiensis_contig1:7503862..7505188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1085.1 ID=mRNA_S-ischiensis_contig1.1085.1|Name=mRNA_S-ischiensis_contig1.1085.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1327bp|location=Sequence derived from alignment at S-ischiensis_contig1:7503862..7505188+ (Schizocladia ischiensis KU_0333)
GTCCCGGGCGAGCAGAGAGGGTGGAGCGGGAGCGAGGGCAGGCGGCACCT
CGTCGCGCAGGACCCTCGGGGGTTTGTCCCGAGCACGTCCCCGGGCCGAC
GGTACGCCCCGAGCAGGCCGGTGCAGGAGCTGGGCCTGGCCATGCTTGTG
TCCTTCCTGGAGGTGACCGACCCGGCCTCATGCCCCGTGCAGCTGATAGA
CCACCTGTCCCAGCAGCTCCTTCAGGTGAGGTGTGGCTACACCCTGGGGG
GGCTGTGGGTGTCAGTAGTCCCCTTGGAACCCTCCCGTGGCGATGCGTAA
AGTGACACTGCCGTAGAGTACAGCAGGGCTGGGCTTTGGCATGCCATTTG
CCGTCGAAAGCGGTAAGTAGGGGCAAAAGGGTGGAGAGCGTAGCCCTCGA
GAACAAGCCGAATGACTCGATGTCTCCCAAGGCACACTTTTGTTCCCACG
CACAACGAAGACTGTGTACAACCTTCAGGTCTGTGAGTGTATGTGTAAAG
TAGTCACATTAGCAAACGAGTTTTATCTCTCTCCAGCGGCGCACGTTTGC
TCCCACACTCAACATGCTCAATGCAAAACAGAACACTGTTATAAGGAACT
AGGTACTGTAGTGCACCTATTGTACTGAAAGGCCAATGTGACTATCCTGT
TCTTTGATGTATACACTATTCCTGTGGCCGGCACATGTCCTGGTCCAGGC
AAACCAAGAACCACAAGCACCCCGCCCTCGCGCCCCCTCCCCCCCCGCTC
CTCACCCCTCACCCCTCCCATCATCTGGCCGCCCATCTACCTACTACTTA
CTTATGTAGAGTGTACTCGAGTACATCACTATCTGCCTGCTCCATCTCGA
TCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCGCAACGTGAGT
ACATACATCACTATCTGTATGTACTTCGAAGTATATGTACGAAGTACTTA
CTACGTATGAAGTAGTACACACTCCTACTACGCAGTATATATCTGCCTGC
CCACCTACTTACCTACTTACGTACATCCAGCCCCCCCCCCCCCCACCCCC
TCCGCCCCCAAGACCGGGCACGGGGCCCTCTTCAGGGAGCTAAGCCAGCG
CGCCCCCCCATGGCCCGAACGAGAGCTCCACCTGCGGGCCCTGCACCTGG
CGGGGGGTGCCCGCTGCCACTCTTCCACCACCGCGCGGAGCAGACCCAGC
CCGGAGGGGTACCGGCCCGAGCGGGTCCTCCACCGCGACTCACTTTACTG
GTGTAGTGTGCAGGGCTTGCCGGAGACGGACTGGTCGGTTGCCTTCCGGC
GCCCCCCGCAAAGGGGGGGAAGAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7503862..7505188+

>mRNA_S-ischiensis_contig1.1085.1 ID=mRNA_S-ischiensis_contig1.1085.1|Name=mRNA_S-ischiensis_contig1.1085.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig1:7503862..7505188+ (Schizocladia ischiensis KU_0333)
GTCCCGGGCGAGCAGAGAGGGTGGAGCGGGAGCGAGGGCAGGCGGCACCT
CGTCGCGCAGGACCCTCGGGGGTTTGTCCCGAGCACGTCCCCGGGCCGAC
GGTACGCCCCGAGCAGGCCGGTGCAGGAGCTGGGCCTGGCCATGCTTGTG
TCCTTCCTGGAGGTGACCGACCCGGCCTCATGCCCCGTGCAGCTGATAGA
CCACCTGTCCCAGCAGCTCCTTCAGGTCCCGGGCGAGCAGAGAGGGTGGA
GCGGGAGCGAGGGCAGGCGGCACCTCGTCGCGCAGGACCCTCGGGGGTTT
GTCCCGAGCACGTCCCCGGGCCGACGGTACGCCCCGAGCAGGCCGGTGCA
GGAGCTGGGCCTGGCCATGCTTGTGTCCTTCCTGGAGGTGACCGACCCGG
CCTCATGCCCCGTGCAGCTGATAGACCACCTGTCCCAGCAGCTCCTTCAG
ACCGGGCACGGGGCCCTCTTCAGGGAGCTAAGCCAGCGCGCCCCCCCATG
GCCCGAACGAGAGCTCCACCTGCGGGCCCTGCACCTGGCGGGGGGTGCCC
GCTGCCACTCTTCCACCACCGCGCGGAGCAGACCCAGCCCGGAGGGGTAC
CGGCCCGAGCGGGTCCTCCACCGCGACTCACTTTACTGGTGTAGTGTGCA
GGGCTTGCCGGAGACGGACTGGTCGGTTGCCTTCCGGCGCCCCCCGCAAA
GGGGGGGAAGAGGGACCGGGCACGGGGCCCTCTTCAGGGAGCTAAGCCAG
CGCGCCCCCCCATGGCCCGAACGAGAGCTCCACCTGCGGGCCCTGCACCT
GGCGGGGGGTGCCCGCTGCCACTCTTCCACCACCGCGCGGAGCAGACCCA
GCCCGGAGGGGTACCGGCCCGAGCGGGTCCTCCACCGCGACTCACTTTAC
TGGTGTAGTGTGCAGGGCTTGCCGGAGACGGACTGGTCGGTTGCCTTCCG
GCGCCCCCCGCAAAGGGGGGGAAGAGGG
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