mRNA_S-ischiensis_contig1.108.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.108.1
Unique NamemRNA_S-ischiensis_contig1.108.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:706923..707220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size299
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.7680101-CDS-S-ischiensis_contig1:706922..7072191622815386.7680101-CDS-S-ischiensis_contig1:706922..707219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 706923..707219 +
1695739673.9126925-CDS-S-ischiensis_contig1:706922..7072191695739673.9126925-CDS-S-ischiensis_contig1:706922..707219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 706923..707219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.108.1prot_S-ischiensis_contig1.108.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 706923..707219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.108.1

>prot_S-ischiensis_contig1.108.1 ID=prot_S-ischiensis_contig1.108.1|Name=mRNA_S-ischiensis_contig1.108.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=99bp
HPPTLGGREEGPVPPDPAVAAAAAVAALPPSWSEAAFEALAAPGEHEYVV
PFPSGVEPSPAFYLWLKFSLVAEAYAGLRPPDGRPLGRRWAPAAGEEEG
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mRNA from alignment at S-ischiensis_contig1:706923..707220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.108.1 ID=mRNA_S-ischiensis_contig1.108.1|Name=mRNA_S-ischiensis_contig1.108.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=298bp|location=Sequence derived from alignment at S-ischiensis_contig1:706923..707220+ (Schizocladia ischiensis KU_0333)
CACCCACCCACCCTGGGGGGGCGGGAGGAAGGCCCGGTGCCCCCAGACCC
TGCGGTGGCAGCGGCGGCGGCGGTGGCAGCCCTGCCCCCAAGCTGGAGCG
AGGCAGCCTTTGAGGCGCTGGCGGCCCCCGGAGAGCACGAGTACGTTGTC
CCCTTCCCCTCGGGGGTGGAGCCGTCCCCGGCCTTCTACCTGTGGCTCAA
GTTCTCCCTCGTGGCGGAGGCGTATGCGGGGCTGCGGCCGCCTGACGGGC
GTCCGCTCGGGCGGCGGTGGGCGCCGGCAGCGGGGGAGGAGGAAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:706923..707220+

>mRNA_S-ischiensis_contig1.108.1 ID=mRNA_S-ischiensis_contig1.108.1|Name=mRNA_S-ischiensis_contig1.108.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=594bp|location=Sequence derived from alignment at S-ischiensis_contig1:706923..707220+ (Schizocladia ischiensis KU_0333)
CACCCACCCACCCTGGGGGGGCGGGAGGAAGGCCCGGTGCCCCCAGACCC
TGCGGTGGCAGCGGCGGCGGCGGTGGCAGCCCTGCCCCCAAGCTGGAGCG
AGGCAGCCTTTGAGGCGCTGGCGGCCCCCGGAGAGCACGAGTACGTTGTC
CCCTTCCCCTCGGGGGTGGAGCCGTCCCCGGCCTTCTACCTGTGGCTCAA
GTTCTCCCTCGTGGCGGAGGCGTATGCGGGGCTGCGGCCGCCTGACGGGC
GTCCGCTCGGGCGGCGGTGGGCGCCGGCAGCGGGGGAGGAGGAAGGGCAC
CCACCCACCCTGGGGGGGCGGGAGGAAGGCCCGGTGCCCCCAGACCCTGC
GGTGGCAGCGGCGGCGGCGGTGGCAGCCCTGCCCCCAAGCTGGAGCGAGG
CAGCCTTTGAGGCGCTGGCGGCCCCCGGAGAGCACGAGTACGTTGTCCCC
TTCCCCTCGGGGGTGGAGCCGTCCCCGGCCTTCTACCTGTGGCTCAAGTT
CTCCCTCGTGGCGGAGGCGTATGCGGGGCTGCGGCCGCCTGACGGGCGTC
CGCTCGGGCGGCGGTGGGCGCCGGCAGCGGGGGAGGAGGAAGGG
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