mRNA_S-ischiensis_contig1.1068.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1068.1
Unique NamemRNA_S-ischiensis_contig1.1068.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7391463..7392147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.9680018-CDS-S-ischiensis_contig1:7391462..73919301622815375.9680018-CDS-S-ischiensis_contig1:7391462..7391930Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7391463..7391930 +
1695739665.5521078-CDS-S-ischiensis_contig1:7391462..73919301695739665.5521078-CDS-S-ischiensis_contig1:7391462..7391930Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7391463..7391930 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.9831448-UTR-S-ischiensis_contig1:7391930..73921471622815375.9831448-UTR-S-ischiensis_contig1:7391930..7392147Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7391931..7392147 +
1695739665.562537-UTR-S-ischiensis_contig1:7391930..73921471695739665.562537-UTR-S-ischiensis_contig1:7391930..7392147Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7391931..7392147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1068.1prot_S-ischiensis_contig1.1068.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7391463..7391930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1068.1

>prot_S-ischiensis_contig1.1068.1 ID=prot_S-ischiensis_contig1.1068.1|Name=mRNA_S-ischiensis_contig1.1068.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=156bp
RGREGERQRGGGGGSWKGEGQGSGRRGQRRRQQRRWRWRRPEEANEQEGQ
QRFPLLQAQPQPQPEPQQHAQAKPASQAQKKRKPQPEPFLGRQAVAAAAW
PWWRRQWPRVPGQPQLHPFQVRLKRRAHTSQRCARLSTGGGEGWIGCLSQ
DRVLP*
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mRNA from alignment at S-ischiensis_contig1:7391463..7392147+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1068.1 ID=mRNA_S-ischiensis_contig1.1068.1|Name=mRNA_S-ischiensis_contig1.1068.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=685bp|location=Sequence derived from alignment at S-ischiensis_contig1:7391463..7392147+ (Schizocladia ischiensis KU_0333)
CGCGGCCGGGAAGGGGAGAGACAGCGAGGCGGCGGCGGAGGAAGTTGGAA
AGGGGAAGGCCAAGGGAGCGGCAGGAGAGGGCAACGACGACGGCAGCAGC
GGCGGTGGCGGTGGCGACGGCCAGAGGAAGCAAATGAACAAGAGGGACAG
CAACGGTTCCCGCTCCTCCAGGCACAGCCGCAGCCGCAGCCGGAGCCGCA
GCAACACGCGCAAGCGAAGCCCGCCTCGCAAGCGCAGAAGAAGCGCAAGC
CGCAGCCGGAGCCATTCCTCGGGCGGCAGGCGGTCGCCGCCGCCGCGTGG
CCGTGGTGGCGGCGGCAGTGGCCGCGGGTGCCAGGGCAGCCGCAGCTCCA
CCCGTTCCAGGTCAGACTGAAGAGAAGAGCCCACACCTCACAGAGATGCG
CACGCCTGTCGACAGGAGGGGGGGAGGGGTGGATAGGTTGTTTGTCGCAG
GACAGGGTGTTGCCTTGAGAGCCTCTGGGTGGTTATCATGGAGAGGGGCA
GCGCAAGCGTTAAGGGCTGCGGGGGCAGCTGATGTTAAGCGAGGTAGGTC
TTAGAGAGGACGGGCGACGGTGCACTGAATTGTAGCATTTTAGGCAGGGA
TTTGTGGAACACACCGCCGTCATCACAGGGTTAGCGACACAATTTATGGC
AATGGAGTCGTGTGCCGTGCAGAACGGGGAGGGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7391463..7392147+

>mRNA_S-ischiensis_contig1.1068.1 ID=mRNA_S-ischiensis_contig1.1068.1|Name=mRNA_S-ischiensis_contig1.1068.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=936bp|location=Sequence derived from alignment at S-ischiensis_contig1:7391463..7392147+ (Schizocladia ischiensis KU_0333)
CGCGGCCGGGAAGGGGAGAGACAGCGAGGCGGCGGCGGAGGAAGTTGGAA
AGGGGAAGGCCAAGGGAGCGGCAGGAGAGGGCAACGACGACGGCAGCAGC
GGCGGTGGCGGTGGCGACGGCCAGAGGAAGCAAATGAACAAGAGGGACAG
CAACGGTTCCCGCTCCTCCAGGCACAGCCGCAGCCGCAGCCGGAGCCGCA
GCAACACGCGCAAGCGAAGCCCGCCTCGCAAGCGCAGAAGAAGCGCAAGC
CGCAGCCGGAGCCATTCCTCGGGCGGCAGGCGGTCGCCGCCGCCGCGTGG
CCGTGGTGGCGGCGGCAGTGGCCGCGGGTGCCAGGGCAGCCGCAGCTCCA
CCCGTTCCAGGTCAGACTGAAGAGAAGAGCCCACACCTCACAGAGATGCG
CACGCCTGTCGACAGGAGGGGGGGAGGGGTGGATAGGTTGTTTGTCGCAG
GACAGGGTGTTGCCTTGACGCGGCCGGGAAGGGGAGAGACAGCGAGGCGG
CGGCGGAGGAAGTTGGAAAGGGGAAGGCCAAGGGAGCGGCAGGAGAGGGC
AACGACGACGGCAGCAGCGGCGGTGGCGGTGGCGACGGCCAGAGGAAGCA
AATGAACAAGAGGGACAGCAACGGTTCCCGCTCCTCCAGGCACAGCCGCA
GCCGCAGCCGGAGCCGCAGCAACACGCGCAAGCGAAGCCCGCCTCGCAAG
CGCAGAAGAAGCGCAAGCCGCAGCCGGAGCCATTCCTCGGGCGGCAGGCG
GTCGCCGCCGCCGCGTGGCCGTGGTGGCGGCGGCAGTGGCCGCGGGTGCC
AGGGCAGCCGCAGCTCCACCCGTTCCAGGTCAGACTGAAGAGAAGAGCCC
ACACCTCACAGAGATGCGCACGCCTGTCGACAGGAGGGGGGGAGGGGTGG
ATAGGTTGTTTGTCGCAGGACAGGGTGTTGCCTTGA
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