mRNA_S-ischiensis_contig1.1057.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1057.1
Unique NamemRNA_S-ischiensis_contig1.1057.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7319782..7321101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003220.1
Hectar predicted targeting categoryother localisation
Exons2
Model size370
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.2431924-CDS-S-ischiensis_contig1:7319782..73200371622815359.2431924-CDS-S-ischiensis_contig1:7319782..7320037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7319783..7320037 -
1695739659.1096115-CDS-S-ischiensis_contig1:7319782..73200371695739659.1096115-CDS-S-ischiensis_contig1:7319782..7320037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7319783..7320037 -
1622815359.2597806-CDS-S-ischiensis_contig1:7320987..73211011622815359.2597806-CDS-S-ischiensis_contig1:7320987..7321101Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7320988..7321101 -
1695739659.1218097-CDS-S-ischiensis_contig1:7320987..73211011695739659.1218097-CDS-S-ischiensis_contig1:7320987..7321101Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7320988..7321101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1057.1prot_S-ischiensis_contig1.1057.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7319783..7321101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1057.1

>prot_S-ischiensis_contig1.1057.1 ID=prot_S-ischiensis_contig1.1057.1|Name=mRNA_S-ischiensis_contig1.1057.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=123bp
YSSGDDAGKSGDGGGRVGDEQGSREGREQRSPHAFDAQVLALTALINCVE
LKENAPNCQALATLPVRDATAATPATVPNGPRGREASPSPAPAPALPGAA
APAAGSGAADGSPKPESSPPSPS
back to top

mRNA from alignment at S-ischiensis_contig1:7319782..7321101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1057.1 ID=mRNA_S-ischiensis_contig1.1057.1|Name=mRNA_S-ischiensis_contig1.1057.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1320bp|location=Sequence derived from alignment at S-ischiensis_contig1:7319782..7321101- (Schizocladia ischiensis KU_0333)
TATAGCTCGGGGGATGATGCGGGCAAGAGCGGGGACGGGGGCGGCAGGGT
GGGTGACGAGCAGGGGAGCCGAGAGGGCCGAGAGCAGCGTTCTCCACATG
CATTTGATGCCCAGGTGCGGTGCAGACCGGGCTTCCCCCTTCTCTCCCCC
CACCACCCGGCACCCACCATCTGAGTAGTACCGCTTCATCAACCCTCGCC
CGTGCTGCTGGGTTGTTGTTTGTTTGCCTCGGGGCGCCTTCCCTTCCTTT
CCCTGCCTTGACCCCGCGACCTGCCCTTGCTGCCTCCATGCACCCGCCGC
TGCGCTGCGTGTGTTTTTGTGCTCTGGAGTACTTCATAACATAACATCTA
GTTCGAGGTACTTTCGTGTATATGCCGCGCTTTGCTGTGCTTCCAAGTCT
GCGCCTCGCCTAAGGAACAACCGCCATTGTTTGCATACAAGAAAGCACCT
GGAAGCACATCCTTTCGTACGGGTCCTCCTGGCTCCAGGGGTCCTTAAAA
AAGGAACAGCTTCAAAGCGCAGTACGGTAGTGCAACAATTTCCACCGTAC
AGTACAGTAGTAGCTGTCAACCACCTCTGCGATACCGCGCGAGGCCTCAT
TCACAAAGTAGGTATCGAGTGCCAAGTGTAGTGGGTTACTGTGTAGTATG
TACAGTACGAGGGGGATTAGTCTGGCTGCGGAAGTGGGCACGTGGTCCAC
AGTCAACAGTGTCGGGACTATTGTAGGCTCTGCAATATTGCTGTACTTCG
AAGTACTTACGGCGAGTGCAGTGTGAGTGCAGTACCAGTACCAGTACCAG
TACTTGTACTACTAGTACCTGGTACACGTGTACTACTACCACCACTACAT
CCTAGTATACTGCGAAAACCTAGGGCAACACTTGACAGTCCCGCATGCAC
CTTCCAATGTCCCGTCGAGAAGTGAAGTACTTCGAAGTACTCATACTGTG
CTAGAGTACAGCATACTGACTCACCAACGCACCCTCCACACCTGCTAAAA
CCCTAGCCGCACCCGCAGCTCAACTGCCCCCTGCTCCCTCCCCGCCCGCC
CGCCTTTCTCCCAGGTGCTGGCCCTGACGGCGCTCATCAACTGCGTGGAG
CTCAAGGAAAACGCGCCCAACTGCCAGGCCCTCGCCACGCTCCCCGTCCG
AGATGCAACCGCAGCAACGCCAGCGACCGTACCCAACGGCCCACGCGGGC
GAGAAGCCTCTCCGTCTCCGGCCCCAGCCCCGGCCCTGCCCGGGGCCGCG
GCCCCGGCCGCGGGATCAGGGGCCGCGGACGGCTCGCCGAAACCGGAATC
GAGCCCGCCCTCCCCCTCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7319782..7321101-

>mRNA_S-ischiensis_contig1.1057.1 ID=mRNA_S-ischiensis_contig1.1057.1|Name=mRNA_S-ischiensis_contig1.1057.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig1:7319782..7321101- (Schizocladia ischiensis KU_0333)
TATAGCTCGGGGGATGATGCGGGCAAGAGCGGGGACGGGGGCGGCAGGGT
GGGTGACGAGCAGGGGAGCCGAGAGGGCCGAGAGCAGCGTTCTCCACATG
CATTTGATGCCCAGTATAGCTCGGGGGATGATGCGGGCAAGAGCGGGGAC
GGGGGCGGCAGGGTGGGTGACGAGCAGGGGAGCCGAGAGGGCCGAGAGCA
GCGTTCTCCACATGCATTTGATGCCCAGGTGCTGGCCCTGACGGCGCTCA
TCAACTGCGTGGAGCTCAAGGAAAACGCGCCCAACTGCCAGGCCCTCGCC
ACGCTCCCCGTCCGAGATGCAACCGCAGCAACGCCAGCGACCGTACCCAA
CGGCCCACGCGGGCGAGAAGCCTCTCCGTCTCCGGCCCCAGCCCCGGCCC
TGCCCGGGGCCGCGGCCCCGGCCGCGGGATCAGGGGCCGCGGACGGCTCG
CCGAAACCGGAATCGAGCCCGCCCTCCCCCTCCGTGCTGGCCCTGACGGC
GCTCATCAACTGCGTGGAGCTCAAGGAAAACGCGCCCAACTGCCAGGCCC
TCGCCACGCTCCCCGTCCGAGATGCAACCGCAGCAACGCCAGCGACCGTA
CCCAACGGCCCACGCGGGCGAGAAGCCTCTCCGTCTCCGGCCCCAGCCCC
GGCCCTGCCCGGGGCCGCGGCCCCGGCCGCGGGATCAGGGGCCGCGGACG
GCTCGCCGAAACCGGAATCGAGCCCGCCCTCCCCCTCC
back to top