mRNA_S-ischiensis_contig1.1056.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1056.1
Unique NamemRNA_S-ischiensis_contig1.1056.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1056.1 vs. uniprot
Match: A0A835Z8W4_9STRA (WAPL domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.190e-19
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:   19 AEDVLSGAEGDDLVLAGYCALLLGCLARRPGRGRRLVLGPTPGECLERLMRVLLAFVSLQEQAGVLTQELAAPICTLMEELQTLA 273
            A+D LS AE D+LVLAGYC+LLLGCL+ R    R  V    PG  +  L RVL AF++LQ+QA VLT E+A P+C L+EEL+ LA
Sbjct:  716 ADDCLSRAEADNLVLAGYCSLLLGCLSVRDEAARAAVAARLPGGTVSALARVLRAFLALQKQAEVLTGEMALPVCALIEELELLA 800
[Close]
BLAST of mRNA_S-ischiensis_contig1.1056.1 vs. uniprot
Match: D7FW36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW36_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.940e-14
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   10 GDEAEDVLSGAEGDDLVLAGYCALLLGCLARRPGRGRRLVLGPTPGECLERLMRVLLAFVSLQEQAGVLTQELAAPICTLMEELQTL 270
            GD  E  +S AEG DLVL G+CALLLG L R   R RRL L   P      ++RVL AF++LQ QAGVLT+EL   +  L+EEL+ L
Sbjct:  583 GDNGEQSMSHAEGTDLVLGGHCALLLGLLVRDQERNRRLALPVLPNGDPTLIVRVLEAFMALQFQAGVLTEELVLAVQGLVEELEGL 669
[Close]
BLAST of mRNA_S-ischiensis_contig1.1056.1 vs. uniprot
Match: A0A6H5JF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF40_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.950e-14
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   10 GDEAEDVLSGAEGDDLVLAGYCALLLGCLARRPGRGRRLVLGPTPGECLERLMRVLLAFVSLQEQAGVLTQELAAPICTLMEELQTL 270
            GD  E  +S AEG DLVL G+CALLLG L R   R RRL L   P      ++RVL AF++LQ QAGVLT+EL   +  L+EEL+ L
Sbjct:  748 GDNGEQSMSHAEGTDLVLGGHCALLLGLLVRDQERNRRLALPVLPNGDPTLIVRVLEAFMALQFQAGVLTEELVLAVQGLVEELEGL 834
[Close]
BLAST of mRNA_S-ischiensis_contig1.1056.1 vs. uniprot
Match: A0A4D9D0K1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0K1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.190e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   34 SGAEGDDLVLAGYCALLLGCLARRPGRGRRLVLGPTPGECLERLMRVLLAFVSLQEQAGVLTQELAAPICTLMEELQ 264
            S  + ++LVLAGY ALLLGC+ R     R  +L   P  C   L+RVL AF++ Q+  GVLT  + AP+  ++ EL+
Sbjct:  973 SNKQAEELVLAGYTALLLGCMMREDAPNRNAILSFLPHHCPHLLVRVLKAFLAFQQSLGVLTSSVMAPVLEMIAELE 1049
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z8W4_9STRA9.190e-1956.47WAPL domain-containing protein n=1 Tax=Tribonema m... [more]
D7FW36_ECTSI1.940e-1452.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF40_9PHAE1.950e-1452.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D0K1_9STRA1.190e-1042.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7318148..7319527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003220.1
Exons3
Model size306
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1056.1prot_S-ischiensis_contig1.1056.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7318149..7319527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815480.0899282-CDS-S-ischiensis_contig1:7318148..73181961622815480.0899282-CDS-S-ischiensis_contig1:7318148..7318196Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7318149..7318196 -
1695739725.749144-CDS-S-ischiensis_contig1:7318148..73181961695739725.749144-CDS-S-ischiensis_contig1:7318148..7318196Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7318149..7318196 -
1622815480.1033092-CDS-S-ischiensis_contig1:7318767..73189031622815480.1033092-CDS-S-ischiensis_contig1:7318767..7318903Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7318768..7318903 -
1695739725.7604616-CDS-S-ischiensis_contig1:7318767..73189031695739725.7604616-CDS-S-ischiensis_contig1:7318767..7318903Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7318768..7318903 -
1622815480.1183572-CDS-S-ischiensis_contig1:7319408..73195271622815480.1183572-CDS-S-ischiensis_contig1:7319408..7319527Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7319409..7319527 -
1695739725.772267-CDS-S-ischiensis_contig1:7319408..73195271695739725.772267-CDS-S-ischiensis_contig1:7319408..7319527Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7319409..7319527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1056.1

>prot_S-ischiensis_contig1.1056.1 ID=prot_S-ischiensis_contig1.1056.1|Name=mRNA_S-ischiensis_contig1.1056.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
EGEGDEAEDVLSGAEGDDLVLAGYCALLLGCLARRPGRGRRLVLGPTPGE
CLERLMRVLLAFVSLQEQAGVLTQELAAPICTLMEELQTLALAVESQRAG
A
back to top

mRNA from alignment at S-ischiensis_contig1:7318148..7319527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1056.1 ID=mRNA_S-ischiensis_contig1.1056.1|Name=mRNA_S-ischiensis_contig1.1056.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1380bp|location=Sequence derived from alignment at S-ischiensis_contig1:7318148..7319527- (Schizocladia ischiensis KU_0333)
GAGGGGGAGGGGGATGAGGCGGAGGATGTGCTGAGCGGTGCGGAGGGAGA
CGACCTTGTTCTGGCAGGGTATTGTGCGCTGCTGCTGGGGTGCCTGGCGC
GGCGGCCCGGGAGGGGAAGGTGGGAGATTGCAGTTTCTGCGATTTCTGTC
TGGGGGACAAGGGGCGGGGAAGGATTGGCATGGTTTTGGGTGACGCGTAG
CTTGGTGTAGCTCGTCCTTGTACACAGTGTACGGCACTCGAGCACTCGTG
GTTAGTGTTTGTAGTTGTACCGGTAGTCCTCTTGGTCCGGAGGAGACTGG
TGACCACGCGCCTTCAACTCTCCCGACAAGTATATATGTAAGTATATGTA
CTCACATTGTGCTTGCCGTAGTCCCGAGACCATTGGCCACGCGCCTCGAT
CGAGACGGAGCAGCACCTGTACAATTGCACCCTGTCGTGCTTGGAGAAGT
GCCTACGCTTTCTTGGTAGTGGGATACAGGCATCCATCGTGCACGCATGT
CGATTGGGGCTGACGAGACAACCACTCGACTCTCCCCGTGTGTGGCGCGG
CGCCTGCCCCACCCCGCCCCGCCCCGCCCCGCCCGACTCGCCTGGTGCCT
GTGTGCTGTGCTGTGCTTGTGCAGGAGGCTGGTTCTGGGGCCCACCCCCG
GGGAATGCCTGGAGAGGCTGATGCGCGTGCTCCTGGCATTTGTGTCGCTG
CAGGAGCAGGCGGGCGTGCTCACACAGGAGCTGGCCGCGCCCATCTGCAC
ACTCATGGAGGTGGGGTGTAGTATTGTGGTATTTTAGTAAGTGCGAGTAC
TACAGTACATAGTAGTTGAAGTATGGTAGTACAAGTACTCGTACAGTACT
ACTGCGTGGTATTTTACTACTGTAGTACAGTAGTACTCGTACTCGTACTA
CTTCGACGTACATAGAAGTAGTTGACGTGTGGAAGTACAAGTACAGTACT
ACTGTACTTAGACTACGAAGTACGAGTACGAGTACCACAGTACATGCCGT
ACATGCCGTAGTACCGTAGTACTATACTTCCAAGTACTTCCGGAAGTATG
TACTTCGAAGTCCTGCACTCCCGTACTGTAGTGCTTGCCGGAGCCCCAAG
ACCATTATCCGATCGAAACAACACAAGGACGCACTACGTACAGTTCTACA
GTAAGTACTTCCGAGCACTACAGGTACTTACAAGTACTTCCATGTCCCCT
ACACCAGCATACTTCCCAAAACACTTTGGAAGTAGCTAACATGTGGTCAA
TGGTCTCGGGACTACGGCAAGCACAACATGAGTACATATATAACACGTGG
ATTCCCCTGCACCGGCCCCTGCCCTCCCCAGGAGCTACAAACCCTGGCCC
TGGCCGTGGAGAGCCAGCGGGCAGGTGCCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7318148..7319527-

>mRNA_S-ischiensis_contig1.1056.1 ID=mRNA_S-ischiensis_contig1.1056.1|Name=mRNA_S-ischiensis_contig1.1056.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig1:7318148..7319527- (Schizocladia ischiensis KU_0333)
GAGGGGGAGGGGGATGAGGCGGAGGATGTGCTGAGCGGTGCGGAGGGAGA
CGACCTTGTTCTGGCAGGGTATTGTGCGCTGCTGCTGGGGTGCCTGGCGC
GGCGGCCCGGGAGGGGAAGGAGGGGGAGGGGGATGAGGCGGAGGATGTGC
TGAGCGGTGCGGAGGGAGACGACCTTGTTCTGGCAGGGTATTGTGCGCTG
CTGCTGGGGTGCCTGGCGCGGCGGCCCGGGAGGGGAAGGAGGCTGGTTCT
GGGGCCCACCCCCGGGGAATGCCTGGAGAGGCTGATGCGCGTGCTCCTGG
CATTTGTGTCGCTGCAGGAGCAGGCGGGCGTGCTCACACAGGAGCTGGCC
GCGCCCATCTGCACACTCATGGAGGAGGCTGGTTCTGGGGCCCACCCCCG
GGGAATGCCTGGAGAGGCTGATGCGCGTGCTCCTGGCATTTGTGTCGCTG
CAGGAGCAGGCGGGCGTGCTCACACAGGAGCTGGCCGCGCCCATCTGCAC
ACTCATGGAGGAGCTACAAACCCTGGCCCTGGCCGTGGAGAGCCAGCGGG
CAGGTGCCGAGCTACAAACCCTGGCCCTGGCCGTGGAGAGCCAGCGGGCA
GGTGCC
back to top