mRNA_S-ischiensis_contig1.1054.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1054.1
Unique NamemRNA_S-ischiensis_contig1.1054.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7316410..7317271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size862
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.7634075-CDS-S-ischiensis_contig1:7316409..73172701622815375.7634075-CDS-S-ischiensis_contig1:7316409..7317270Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7316410..7317270 +
1695739665.4901974-CDS-S-ischiensis_contig1:7316409..73172701695739665.4901974-CDS-S-ischiensis_contig1:7316409..7317270Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7316410..7317270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1054.1prot_S-ischiensis_contig1.1054.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7316410..7317270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1054.1

>prot_S-ischiensis_contig1.1054.1 ID=prot_S-ischiensis_contig1.1054.1|Name=mRNA_S-ischiensis_contig1.1054.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=287bp
PAPPPSAPVPACPAAATTGDRDREDRLNPSSPVSLDSPAQAPARPLCPPE
LEPGLAAPAPARLGLPRVGQAALAGLWGGLREALRRPSPPARAGHFPLAR
APLASPLRDSPPPATASPCSPLDPAAAASAAWARLDGPPGPAFVQAGRLL
APAVTPAPALAVPTAPEPGSVRCCGWSSAASSSEKSSKTVTLPPPVLLAW
EPPVRKGDMLHMGVNKELVSSFSSSSSSPSSPPPAPPPRAFSAFPASSSS
SPSLSSPRSSLSPSSSSTACPRRNLFRPILLPPRPGP
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mRNA from alignment at S-ischiensis_contig1:7316410..7317271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1054.1 ID=mRNA_S-ischiensis_contig1.1054.1|Name=mRNA_S-ischiensis_contig1.1054.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=862bp|location=Sequence derived from alignment at S-ischiensis_contig1:7316410..7317271+ (Schizocladia ischiensis KU_0333)
CCCGCTCCTCCGCCTTCTGCTCCTGTCCCAGCGTGTCCAGCTGCTGCCAC
CACTGGTGACCGTGATCGAGAGGATCGCCTCAACCCTTCCTCACCAGTAT
CGCTGGACTCACCAGCCCAAGCCCCAGCGCGGCCCCTGTGCCCACCGGAG
CTGGAGCCCGGCTTGGCAGCGCCGGCGCCGGCGCGCCTGGGACTGCCTCG
CGTGGGGCAGGCGGCGCTCGCCGGCCTTTGGGGGGGGCTGCGCGAGGCGC
TCCGACGGCCTTCTCCCCCGGCTCGGGCAGGCCATTTCCCCTTGGCCCGG
GCACCGCTGGCCTCGCCGCTCCGAGACAGCCCTCCCCCTGCTACCGCCTC
ACCGTGCTCTCCGCTCGATCCAGCGGCGGCTGCAAGTGCAGCGTGGGCGC
GCTTGGACGGTCCGCCGGGGCCCGCGTTTGTGCAGGCAGGGCGGCTGCTG
GCCCCCGCCGTGACCCCGGCCCCAGCGCTTGCAGTGCCCACAGCTCCTGA
GCCCGGGTCGGTCAGGTGCTGCGGGTGGTCGTCGGCTGCATCCAGCTCCG
AAAAATCGTCAAAGACGGTGACGCTGCCGCCGCCGGTGCTGCTGGCTTGG
GAGCCGCCCGTGCGCAAGGGCGACATGCTCCACATGGGTGTGAACAAGGA
GTTGGTGTCTTCTTTTTCCTCCTCCTCTTCTTCCCCTTCCTCTCCTCCCC
CAGCTCCTCCTCCGCGCGCCTTTTCTGCTTTTCCAGCCTCCTCCTCCTCT
TCACCTTCACTTTCTTCTCCCCGTTCCTCTCTCTCGCCCTCTTCCTCCTC
AACCGCTTGTCCGCGCCGCAATCTCTTCCGCCCAATCCTCCTGCCTCCCC
GGCCCGGCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7316410..7317271+

>mRNA_S-ischiensis_contig1.1054.1 ID=mRNA_S-ischiensis_contig1.1054.1|Name=mRNA_S-ischiensis_contig1.1054.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1722bp|location=Sequence derived from alignment at S-ischiensis_contig1:7316410..7317271+ (Schizocladia ischiensis KU_0333)
CCCGCTCCTCCGCCTTCTGCTCCTGTCCCAGCGTGTCCAGCTGCTGCCAC
CACTGGTGACCGTGATCGAGAGGATCGCCTCAACCCTTCCTCACCAGTAT
CGCTGGACTCACCAGCCCAAGCCCCAGCGCGGCCCCTGTGCCCACCGGAG
CTGGAGCCCGGCTTGGCAGCGCCGGCGCCGGCGCGCCTGGGACTGCCTCG
CGTGGGGCAGGCGGCGCTCGCCGGCCTTTGGGGGGGGCTGCGCGAGGCGC
TCCGACGGCCTTCTCCCCCGGCTCGGGCAGGCCATTTCCCCTTGGCCCGG
GCACCGCTGGCCTCGCCGCTCCGAGACAGCCCTCCCCCTGCTACCGCCTC
ACCGTGCTCTCCGCTCGATCCAGCGGCGGCTGCAAGTGCAGCGTGGGCGC
GCTTGGACGGTCCGCCGGGGCCCGCGTTTGTGCAGGCAGGGCGGCTGCTG
GCCCCCGCCGTGACCCCGGCCCCAGCGCTTGCAGTGCCCACAGCTCCTGA
GCCCGGGTCGGTCAGGTGCTGCGGGTGGTCGTCGGCTGCATCCAGCTCCG
AAAAATCGTCAAAGACGGTGACGCTGCCGCCGCCGGTGCTGCTGGCTTGG
GAGCCGCCCGTGCGCAAGGGCGACATGCTCCACATGGGTGTGAACAAGGA
GTTGGTGTCTTCTTTTTCCTCCTCCTCTTCTTCCCCTTCCTCTCCTCCCC
CAGCTCCTCCTCCGCGCGCCTTTTCTGCTTTTCCAGCCTCCTCCTCCTCT
TCACCTTCACTTTCTTCTCCCCGTTCCTCTCTCTCGCCCTCTTCCTCCTC
AACCGCTTGTCCGCGCCGCAATCTCTTCCGCCCAATCCTCCTGCCTCCCC
GGCCCGGCCCCCCCGCTCCTCCGCCTTCTGCTCCTGTCCCAGCGTGTCCA
GCTGCTGCCACCACTGGTGACCGTGATCGAGAGGATCGCCTCAACCCTTC
CTCACCAGTATCGCTGGACTCACCAGCCCAAGCCCCAGCGCGGCCCCTGT
GCCCACCGGAGCTGGAGCCCGGCTTGGCAGCGCCGGCGCCGGCGCGCCTG
GGACTGCCTCGCGTGGGGCAGGCGGCGCTCGCCGGCCTTTGGGGGGGGCT
GCGCGAGGCGCTCCGACGGCCTTCTCCCCCGGCTCGGGCAGGCCATTTCC
CCTTGGCCCGGGCACCGCTGGCCTCGCCGCTCCGAGACAGCCCTCCCCCT
GCTACCGCCTCACCGTGCTCTCCGCTCGATCCAGCGGCGGCTGCAAGTGC
AGCGTGGGCGCGCTTGGACGGTCCGCCGGGGCCCGCGTTTGTGCAGGCAG
GGCGGCTGCTGGCCCCCGCCGTGACCCCGGCCCCAGCGCTTGCAGTGCCC
ACAGCTCCTGAGCCCGGGTCGGTCAGGTGCTGCGGGTGGTCGTCGGCTGC
ATCCAGCTCCGAAAAATCGTCAAAGACGGTGACGCTGCCGCCGCCGGTGC
TGCTGGCTTGGGAGCCGCCCGTGCGCAAGGGCGACATGCTCCACATGGGT
GTGAACAAGGAGTTGGTGTCTTCTTTTTCCTCCTCCTCTTCTTCCCCTTC
CTCTCCTCCCCCAGCTCCTCCTCCGCGCGCCTTTTCTGCTTTTCCAGCCT
CCTCCTCCTCTTCACCTTCACTTTCTTCTCCCCGTTCCTCTCTCTCGCCC
TCTTCCTCCTCAACCGCTTGTCCGCGCCGCAATCTCTTCCGCCCAATCCT
CCTGCCTCCCCGGCCCGGCCCC
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