mRNA_S-ischiensis_contig1.1053.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1053.1
Unique NamemRNA_S-ischiensis_contig1.1053.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7315267..7316387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1121
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1053.1prot_S-ischiensis_contig1.1053.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7315562..7316347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.6953363-UTR-S-ischiensis_contig1:7315266..73155611622815375.6953363-UTR-S-ischiensis_contig1:7315266..7315561Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7315267..7315561 +
1695739665.4569044-UTR-S-ischiensis_contig1:7315266..73155611695739665.4569044-UTR-S-ischiensis_contig1:7315266..7315561Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7315267..7315561 +
1622815375.725748-UTR-S-ischiensis_contig1:7316347..73163871622815375.725748-UTR-S-ischiensis_contig1:7316347..7316387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7316348..7316387 +
1695739665.4799721-UTR-S-ischiensis_contig1:7316347..73163871695739665.4799721-UTR-S-ischiensis_contig1:7316347..7316387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7316348..7316387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.7111413-CDS-S-ischiensis_contig1:7315561..73163471622815375.7111413-CDS-S-ischiensis_contig1:7315561..7316347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7315562..7316347 +
1695739665.4687376-CDS-S-ischiensis_contig1:7315561..73163471695739665.4687376-CDS-S-ischiensis_contig1:7315561..7316347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7315562..7316347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1053.1

>prot_S-ischiensis_contig1.1053.1 ID=prot_S-ischiensis_contig1.1053.1|Name=mRNA_S-ischiensis_contig1.1053.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=262bp
MPRRTSRWKKGRGVSQCAAKLLLVSSGSSDVAAYYSSCTIVRQYHKTLHD
DKSCHNSPAEVFSRCRIQIPTHPPPTSHWHSIWPGTPPPPPPPQAYESPP
GGGPLLPAQGPGPPPRQHPSARWHLQQRRQPRAQPRGTCPWHLLPRHGGG
RRGASPEPWAASRTALAPDRHRHCHVRARARARDRALAQPLPWACGVPLA
VPAGPGPRARLGRGSLSPALAMVASRPWASSCCPHWPTRSCQWATAAWLP
CRSCHSSTQPR*
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mRNA from alignment at S-ischiensis_contig1:7315267..7316387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1053.1 ID=mRNA_S-ischiensis_contig1.1053.1|Name=mRNA_S-ischiensis_contig1.1053.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1121bp|location=Sequence derived from alignment at S-ischiensis_contig1:7315267..7316387+ (Schizocladia ischiensis KU_0333)
GCTTGTTGGGGGGGGGCGCATATGAACTTCACACCGAATGTGACGCGGCC
GCGCCGCCTCTTCGGGGCGGGAATCCCCAAAGTTGAGACTGGGCCCAGTG
AACATAATGCCAGTGGAATACCCCGGGCTTGCAGGTTTCCTTCAAACATG
GCGCAAGCCACGGCGGTCCAAGTGAGGCTCGAATAACAGGTGATGTGAGG
TACTTGTTCTTGACTAGTGGCCACTGTGCCGTGACATGGTGTAGGTGCTG
TGGTGGCCTCAGTTACAGAGTGACTAGGAAGCAGTAGTCACATCAATGCC
GCGCAGAACTAGCAGATGGAAAAAAGGGAGAGGTGTGTCACAATGTGCCG
CGAAACTATTGCTGGTCTCTAGTGGCTCTAGTGACGTGGCTGCATACTAC
AGTAGCTGTACAATAGTGAGACAGTACCACAAAACGCTACACGATGACAA
GAGCTGCCACAACAGCCCGGCGGAGGTGTTCAGTCGCTGTCGAATTCAAA
TACCGACACATCCACCGCCGACGTCGCACTGGCACTCGATTTGGCCGGGG
ACGCCGCCGCCGCCGCCACCGCCGCAGGCCTACGAGTCGCCCCCGGGCGG
TGGCCCGCTTTTGCCGGCCCAGGGGCCTGGCCCGCCGCCTCGACAACATC
CGTCTGCCCGCTGGCATCTTCAACAGCGGCGACAGCCTCGGGCACAACCA
CGGGGGACTTGCCCTTGGCACCTGCTCCCCCGACACGGCGGCGGGCGACG
GGGAGCGTCCCCGGAGCCCTGGGCGGCTTCCCGGACGGCCCTGGCCCCTG
ACCGCCACCGCCACTGCCACGTCCGAGCCCGGGCCCGGGCCCGGGACCGG
GCCCTGGCCCAGCCCCTCCCTTGGGCTTGCGGCGTGCCATTGGCAGTGCC
GGCGGGCCCGGGCCCGCGGGCGCGACTCGGACGGGGCAGCCTGAGTCCTG
CGCTGGCGATGGTGGCATCACGGCCTTGGGCTTCAAGTTGCTGTCCGCAC
TGGCCGACTCGGAGCTGCCAGTGGGCGACGGCCGCCTGGCTGCCGTGCCG
CAGTTGCCACAGCTCGACGCAGCCGCGCTGAGGCCGGCCCGTCGGCTCCG
TGCCGCCCCCGGGCCCACCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7315267..7316387+

>mRNA_S-ischiensis_contig1.1053.1 ID=mRNA_S-ischiensis_contig1.1053.1|Name=mRNA_S-ischiensis_contig1.1053.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1572bp|location=Sequence derived from alignment at S-ischiensis_contig1:7315267..7316387+ (Schizocladia ischiensis KU_0333)
ATGCCGCGCAGAACTAGCAGATGGAAAAAAGGGAGAGGTGTGTCACAATG
TGCCGCGAAACTATTGCTGGTCTCTAGTGGCTCTAGTGACGTGGCTGCAT
ACTACAGTAGCTGTACAATAGTGAGACAGTACCACAAAACGCTACACGAT
GACAAGAGCTGCCACAACAGCCCGGCGGAGGTGTTCAGTCGCTGTCGAAT
TCAAATACCGACACATCCACCGCCGACGTCGCACTGGCACTCGATTTGGC
CGGGGACGCCGCCGCCGCCGCCACCGCCGCAGGCCTACGAGTCGCCCCCG
GGCGGTGGCCCGCTTTTGCCGGCCCAGGGGCCTGGCCCGCCGCCTCGACA
ACATCCGTCTGCCCGCTGGCATCTTCAACAGCGGCGACAGCCTCGGGCAC
AACCACGGGGGACTTGCCCTTGGCACCTGCTCCCCCGACACGGCGGCGGG
CGACGGGGAGCGTCCCCGGAGCCCTGGGCGGCTTCCCGGACGGCCCTGGC
CCCTGACCGCCACCGCCACTGCCACGTCCGAGCCCGGGCCCGGGCCCGGG
ACCGGGCCCTGGCCCAGCCCCTCCCTTGGGCTTGCGGCGTGCCATTGGCA
GTGCCGGCGGGCCCGGGCCCGCGGGCGCGACTCGGACGGGGCAGCCTGAG
TCCTGCGCTGGCGATGGTGGCATCACGGCCTTGGGCTTCAAGTTGCTGTC
CGCACTGGCCGACTCGGAGCTGCCAGTGGGCGACGGCCGCCTGGCTGCCG
TGCCGCAGTTGCCACAGCTCGACGCAGCCGCGCTGAATGCCGCGCAGAAC
TAGCAGATGGAAAAAAGGGAGAGGTGTGTCACAATGTGCCGCGAAACTAT
TGCTGGTCTCTAGTGGCTCTAGTGACGTGGCTGCATACTACAGTAGCTGT
ACAATAGTGAGACAGTACCACAAAACGCTACACGATGACAAGAGCTGCCA
CAACAGCCCGGCGGAGGTGTTCAGTCGCTGTCGAATTCAAATACCGACAC
ATCCACCGCCGACGTCGCACTGGCACTCGATTTGGCCGGGGACGCCGCCG
CCGCCGCCACCGCCGCAGGCCTACGAGTCGCCCCCGGGCGGTGGCCCGCT
TTTGCCGGCCCAGGGGCCTGGCCCGCCGCCTCGACAACATCCGTCTGCCC
GCTGGCATCTTCAACAGCGGCGACAGCCTCGGGCACAACCACGGGGGACT
TGCCCTTGGCACCTGCTCCCCCGACACGGCGGCGGGCGACGGGGAGCGTC
CCCGGAGCCCTGGGCGGCTTCCCGGACGGCCCTGGCCCCTGACCGCCACC
GCCACTGCCACGTCCGAGCCCGGGCCCGGGCCCGGGACCGGGCCCTGGCC
CAGCCCCTCCCTTGGGCTTGCGGCGTGCCATTGGCAGTGCCGGCGGGCCC
GGGCCCGCGGGCGCGACTCGGACGGGGCAGCCTGAGTCCTGCGCTGGCGA
TGGTGGCATCACGGCCTTGGGCTTCAAGTTGCTGTCCGCACTGGCCGACT
CGGAGCTGCCAGTGGGCGACGGCCGCCTGGCTGCCGTGCCGCAGTTGCCA
CAGCTCGACGCAGCCGCGCTGA
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