mRNA_S-ischiensis_contig1.1048.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1048.1
Unique NamemRNA_S-ischiensis_contig1.1048.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7238177..7238805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size629
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.622809-CDS-S-ischiensis_contig1:7238176..72385001622815375.622809-CDS-S-ischiensis_contig1:7238176..7238500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7238177..7238500 +
1695739665.439324-CDS-S-ischiensis_contig1:7238176..72385001695739665.439324-CDS-S-ischiensis_contig1:7238176..7238500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7238177..7238500 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.638327-UTR-S-ischiensis_contig1:7238500..72388051622815375.638327-UTR-S-ischiensis_contig1:7238500..7238805Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7238501..7238805 +
1695739665.448871-UTR-S-ischiensis_contig1:7238500..72388051695739665.448871-UTR-S-ischiensis_contig1:7238500..7238805Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7238501..7238805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1048.1prot_S-ischiensis_contig1.1048.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7238177..7238500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1048.1

>prot_S-ischiensis_contig1.1048.1 ID=prot_S-ischiensis_contig1.1048.1|Name=mRNA_S-ischiensis_contig1.1048.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
PTHSHARTYAYNHGRACTNAHTYTWTHSHGRARARQHVHTQPWTRMCARM
HIHTHGRTSMDVPCTHIRTCHGSVHHAGSCSQGPCAACQPPEWALQRVHN
QPGVDVY*
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mRNA from alignment at S-ischiensis_contig1:7238177..7238805+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1048.1 ID=mRNA_S-ischiensis_contig1.1048.1|Name=mRNA_S-ischiensis_contig1.1048.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=629bp|location=Sequence derived from alignment at S-ischiensis_contig1:7238177..7238805+ (Schizocladia ischiensis KU_0333)
CCCACCCACTCGCACGCACGCACGTACGCATACAACCACGGACGCGCATG
CACAAACGCACATACATACACATGGACTCACAGCCATGGACGTGCGCGTG
CACGTCAACACGTACACACACAACCATGGACGCGCATGTGCGCACGCATG
CACATACATACGCATGGGCGCACAAGCATGGACGTGCCATGCACGCACAT
ACGCACATGCCACGGCAGCGTCCACCATGCAGGCTCCTGCTCTCAGGGCC
CGTGCGCGGCGTGCCAGCCCCCTGAGTGGGCGCTACAACGCGTACATAAC
CAACCTGGCGTAGATGTCTACTAGTACATGACGCGGAACTTGTCCATGCT
CCATGCAGTGGTACACGAGTACAATACTTTCATATATTTTTAAATACTTG
GGGGTGTTATGATCAGCAAAAAGGCTGCATGGCCGTGTGACTTGCGAAAC
TCTTGTTCTCGACTCTCGGGCAACAAACCCATACTACTGTGCGCTCACTG
CTAAAAAAGGTCCCCCGGGGGTGCAGCCTCGACTTGATTCTCAGCGGAGA
AGAGATACCTGTACAAGCACACACACACACACACACACACAGCGCCCCCG
GGTGGCGTTATCATACAAAGGACTGTTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7238177..7238805+

>mRNA_S-ischiensis_contig1.1048.1 ID=mRNA_S-ischiensis_contig1.1048.1|Name=mRNA_S-ischiensis_contig1.1048.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig1:7238177..7238805+ (Schizocladia ischiensis KU_0333)
CCCACCCACTCGCACGCACGCACGTACGCATACAACCACGGACGCGCATG
CACAAACGCACATACATACACATGGACTCACAGCCATGGACGTGCGCGTG
CACGTCAACACGTACACACACAACCATGGACGCGCATGTGCGCACGCATG
CACATACATACGCATGGGCGCACAAGCATGGACGTGCCATGCACGCACAT
ACGCACATGCCACGGCAGCGTCCACCATGCAGGCTCCTGCTCTCAGGGCC
CGTGCGCGGCGTGCCAGCCCCCTGAGTGGGCGCTACAACGCGTACATAAC
CAACCTGGCGTAGATGTCTACTAGCCCACCCACTCGCACGCACGCACGTA
CGCATACAACCACGGACGCGCATGCACAAACGCACATACATACACATGGA
CTCACAGCCATGGACGTGCGCGTGCACGTCAACACGTACACACACAACCA
TGGACGCGCATGTGCGCACGCATGCACATACATACGCATGGGCGCACAAG
CATGGACGTGCCATGCACGCACATACGCACATGCCACGGCAGCGTCCACC
ATGCAGGCTCCTGCTCTCAGGGCCCGTGCGCGGCGTGCCAGCCCCCTGAG
TGGGCGCTACAACGCGTACATAACCAACCTGGCGTAGATGTCTACTAG
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