mRNA_S-ischiensis_contig1.104.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.104.1
Unique NamemRNA_S-ischiensis_contig1.104.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.104.1 vs. uniprot
Match: A0A6H5KSC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.750e-10
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 VLAAVDVLCRQWWVRTDWVRLLFRER-------PPSSGASEAMMLAFSLRRYAHIHSYVLPREPAFPDFDGDTAA 204
            VL+  DVL  QW++  D VRLLFRE+           G   A+ L++SLRRYA + SYVLP +PA P++ G+ +A
Sbjct:  438 VLSPADVLFSQWFLHKDLVRLLFREKWAGVASGNGGKGGPAALALSYSLRRYAGVPSYVLPSDPALPEYSGNMSA 512
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BLAST of mRNA_S-ischiensis_contig1.104.1 vs. uniprot
Match: D8LEV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV7_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.380e-10
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 VLAAVDVLCRQWWVRTDWVRLLFRER-------PPSSGASEAMMLAFSLRRYAHIHSYVLPREPAFPDFDGDTAA 204
            VL+  DVL  QW++  D +RLLFRE+           G   A+ L++SLRRYA + SYVLP +PA P++ G+ +A
Sbjct:  320 VLSPADVLFSQWFLHKDLIRLLFREKWAGVASGNGGKGGPAALALSYSLRRYAGVPSYVLPSDPALPEYSGNMSA 394
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BLAST of mRNA_S-ischiensis_contig1.104.1 vs. uniprot
Match: D8LCA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA3_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.030e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    4 LAAVDVLCRQWWVRTDWVRLLFRERPPSSGASEAMMLAFSLRRYAHIHSYVLPRE 168
            L  VD+LC  W+V TDWV+LLFRE+  +    E  MLA+SLR++A + S+VLP +
Sbjct:   36 LQEVDLLCSHWFVETDWVKLLFREKWETPQTGEDYMLAYSLRKHAGVRSFVLPMD 90
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BLAST of mRNA_S-ischiensis_contig1.104.1 vs. uniprot
Match: A0A7S2Y3B8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3B8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.010e-7
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 VLAAVDVLCRQWWVRTDWVRLLFRERPPSSGASEAMMLAFSLRRYAHIHSYVLPRE 168
            +L   D+LC QW+++ D V+LLFRER  +    E   LA+SLRRYA+  SY++P +
Sbjct:  267 ILYEADLLCSQWFLQVDSVKLLFRERWVTYQTGEDYFLAYSLRRYANAPSYIMPMD 322
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BLAST of mRNA_S-ischiensis_contig1.104.1 vs. uniprot
Match: A0A7S3XR94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR94_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 7.350e-7
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    4 LAAVDVLCRQWWVRTDWVRLLFRERPPSSGASEAMMLAFSLRRYAHIHSYVLPRE 168
            L A D+LC QW++ TD VRLLFRE   +   +E   LA+S+R++A + SYVLP +
Sbjct:  187 LMAADLLCSQWFLETDSVRLLFREPWVTFETAEDYHLAYSMRKFADLPSYVLPMD 241
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KSC9_9PHAE1.750e-1045.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEV7_ECTSI2.380e-1044.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCA3_ECTSI2.030e-950.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y3B8_9STRA3.010e-746.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XR94_HETAK7.350e-749.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:702273..702911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.4e-08
Seed eggNOG ortholog2880.D8LCA3
EggNOG OGs2CMCB@1,2QPYF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.5831938-CDS-S-ischiensis_contig1:702272..7023741622815386.5831938-CDS-S-ischiensis_contig1:702272..702374Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 702273..702374 +
1695739673.7867994-CDS-S-ischiensis_contig1:702272..7023741695739673.7867994-CDS-S-ischiensis_contig1:702272..702374Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 702273..702374 +
1622815386.5994058-CDS-S-ischiensis_contig1:702702..7029091622815386.5994058-CDS-S-ischiensis_contig1:702702..702909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 702703..702909 +
1695739673.8006306-CDS-S-ischiensis_contig1:702702..7029091695739673.8006306-CDS-S-ischiensis_contig1:702702..702909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 702703..702909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.104.1prot_S-ischiensis_contig1.104.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 702273..702909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.104.1

>prot_S-ischiensis_contig1.104.1 ID=prot_S-ischiensis_contig1.104.1|Name=mRNA_S-ischiensis_contig1.104.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
VLAAVDVLCRQWWVRTDWVRLLFRERPPSSGASEAMMLAFSLRRYAHIHS
YVLPREPAFPDFDGDTAASQGETARDACSPVFVKGRGDDRPRLAWPAGPA
QTV
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mRNA from alignment at S-ischiensis_contig1:702273..702911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.104.1 ID=mRNA_S-ischiensis_contig1.104.1|Name=mRNA_S-ischiensis_contig1.104.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=639bp|location=Sequence derived from alignment at S-ischiensis_contig1:702273..702911+ (Schizocladia ischiensis KU_0333)
GTGCTGGCGGCCGTGGACGTGCTTTGTCGGCAGTGGTGGGTGCGGACGGA
TTGGGTGCGTCTGCTGTTCCGGGAGCGGCCGCCCTCCTCGGGCGCCAGTG
AGGTAAGCTAACCCTTTGACCCCTGGGGTCCGCATAATCATGGGGTTTTA
GTGTGTATGTCCAACTAAAAAGGCGTAAATGGGCTAAACTGCTGCACGCA
GCTTACTGCACCCGCCTCTAAGAGCGCGCATCGCGTTTGGGGAAACAAAA
ATAAAGAAGAACTCGTTCGTTCGTGTTGCTTCAGCACACGATGATTTGTC
CGCCTGCCCCGCTCCCGTGAAACCCCCTCACTCGTCCCCCCGTGCCCGGC
CCCCTCCGCTCTCTCGCCTACCCCCACCTCGAATGCCTCCCTTCATTGAA
CAAAAATTGCAAAAAATGCGCCTTGGGCAGGCGATGATGCTCGCCTTCAG
CCTGCGGCGATACGCCCACATCCACAGCTACGTCCTGCCCCGTGAGCCGG
CCTTCCCGGACTTTGACGGCGACACCGCCGCCTCCCAAGGCGAAACCGCC
CGCGACGCCTGCAGCCCCGTCTTCGTCAAGGGGCGCGGCGACGACCGGCC
ACGCTTGGCCTGGCCGGCCGGGCCTGCCCAAACCGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:702273..702911+

>mRNA_S-ischiensis_contig1.104.1 ID=mRNA_S-ischiensis_contig1.104.1|Name=mRNA_S-ischiensis_contig1.104.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig1:702273..702911+ (Schizocladia ischiensis KU_0333)
GTGCTGGCGGCCGTGGACGTGCTTTGTCGGCAGTGGTGGGTGCGGACGGA
TTGGGTGCGTCTGCTGTTCCGGGAGCGGCCGCCCTCCTCGGGCGCCAGTG
AGGTGCTGGCGGCCGTGGACGTGCTTTGTCGGCAGTGGTGGGTGCGGACG
GATTGGGTGCGTCTGCTGTTCCGGGAGCGGCCGCCCTCCTCGGGCGCCAG
TGAGGCGATGATGCTCGCCTTCAGCCTGCGGCGATACGCCCACATCCACA
GCTACGTCCTGCCCCGTGAGCCGGCCTTCCCGGACTTTGACGGCGACACC
GCCGCCTCCCAAGGCGAAACCGCCCGCGACGCCTGCAGCCCCGTCTTCGT
CAAGGGGCGCGGCGACGACCGGCCACGCTTGGCCTGGCCGGCCGGGCCTG
CCCAAACCGTGGCGATGATGCTCGCCTTCAGCCTGCGGCGATACGCCCAC
ATCCACAGCTACGTCCTGCCCCGTGAGCCGGCCTTCCCGGACTTTGACGG
CGACACCGCCGCCTCCCAAGGCGAAACCGCCCGCGACGCCTGCAGCCCCG
TCTTCGTCAAGGGGCGCGGCGACGACCGGCCACGCTTGGCCTGGCCGGCC
GGGCCTGCCCAAACCGTG
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