mRNA_S-ischiensis_contig1.1030.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1030.1
Unique NamemRNA_S-ischiensis_contig1.1030.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7111949..7112933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size428
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1030.1prot_S-ischiensis_contig1.1030.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7111949..7112910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.8471963-CDS-S-ischiensis_contig1:7111948..71123141622815358.8471963-CDS-S-ischiensis_contig1:7111948..7112314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7111949..7112314 -
1695739658.909454-CDS-S-ischiensis_contig1:7111948..71123141695739658.909454-CDS-S-ischiensis_contig1:7111948..7112314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7111949..7112314 -
1622815358.8591795-CDS-S-ischiensis_contig1:7112871..71129101622815358.8591795-CDS-S-ischiensis_contig1:7112871..7112910Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7112872..7112910 -
1695739658.925206-CDS-S-ischiensis_contig1:7112871..71129101695739658.925206-CDS-S-ischiensis_contig1:7112871..7112910Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7112872..7112910 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.8739545-UTR-S-ischiensis_contig1:7112910..71129331622815358.8739545-UTR-S-ischiensis_contig1:7112910..7112933Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7112911..7112933 -
1695739658.935263-UTR-S-ischiensis_contig1:7112910..71129331695739658.935263-UTR-S-ischiensis_contig1:7112910..7112933Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7112911..7112933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1030.1

>prot_S-ischiensis_contig1.1030.1 ID=prot_S-ischiensis_contig1.1030.1|Name=mRNA_S-ischiensis_contig1.1030.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
MGRFGLVERVGVKSKCAVVLFHSRGDVAAAVDGYDGPWRVQPVGTILRAA
ASFSLSANAASTMAVDSAFPAPATAATAAGPVGNHRQDTSQRPRAEPKTG
PEAGLKARGRAKAGVEAGEGGETAAARAAADAEAA
back to top

mRNA from alignment at S-ischiensis_contig1:7111949..7112933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1030.1 ID=mRNA_S-ischiensis_contig1.1030.1|Name=mRNA_S-ischiensis_contig1.1030.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=985bp|location=Sequence derived from alignment at S-ischiensis_contig1:7111949..7112933- (Schizocladia ischiensis KU_0333)
GAGAGGAGGAGGTGGCACGGGAGATGGGGCGGTTTGGGCTTGTGGAGCGC
GTCGGGGTGAAGGTGAGAGGGGAGGGGGGGAGGGGGGCCGGAGGGTGGAG
GGCAGGTGGGGGTGGGCGGGCAGGCAGGCGGGCGGGTGGGCGGGCGGGTG
GGTGGGAAGGTGATGTATTTGTTTTGCACGTGGGAGTGGCTGGACGGTGG
GGGCTTGGCGCGGTCACACATTGAGAAGGAATCATTCTTCTTCCCCTACC
CACGGTATGCAGTGCAAGCTCTGCTTCCCCTGCTTCGGTTTGTCAAGTGC
GATGTGGCGCATGCTGTGTGAACTGCACCCCCAATGAGTGCTTGGTAGTA
CAGTACTCGTGAAAAGTATACAGTACCATGCAGCACAACACGGGGGGAGG
TGACAGCCCCTGCCCACGCCACACGCCTGCCTCCTCCTCGCCCGCGAGGC
GACCAGACGAGTTTGAAGCAGTGCATTGACCGGCCCACGAAACGGCAGTG
GCCTCATACGCCCTCCCCACCCAAGCCATGCAAACACGCCCATGCCTCTC
TCCACCCCCGGCACAAACGACGCCCCCCACTACCGCCGCCGCCGCCGCCG
CCGCCGCCGCCACCAACAGTCCAAGTGCGCAGTAGTGCTCTTTCACTCCC
GTGGCGACGTCGCCGCGGCCGTGGACGGCTACGACGGCCCGTGGAGGGTC
CAGCCCGTGGGGACCATTCTCAGGGCCGCTGCCTCATTCTCCTTGTCCGC
CAACGCAGCCTCGACCATGGCCGTGGACTCGGCATTCCCCGCCCCCGCCA
CCGCCGCCACCGCAGCGGGCCCAGTGGGCAACCATCGTCAGGACACCTCC
CAGAGGCCCAGGGCTGAGCCCAAGACCGGTCCCGAGGCCGGGCTCAAGGC
AAGGGGCAGGGCCAAAGCCGGGGTGGAAGCTGGTGAAGGAGGGGAAACAG
CAGCGGCGCGCGCCGCCGCTGATGCTGAAGCTGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7111949..7112933-

>mRNA_S-ischiensis_contig1.1030.1 ID=mRNA_S-ischiensis_contig1.1030.1|Name=mRNA_S-ischiensis_contig1.1030.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig1:7111949..7112933- (Schizocladia ischiensis KU_0333)
ATGGGGCGGTTTGGGCTTGTGGAGCGCGTCGGGGTGAAGATGGGGCGGTT
TGGGCTTGTGGAGCGCGTCGGGGTGAAGTCCAAGTGCGCAGTAGTGCTCT
TTCACTCCCGTGGCGACGTCGCCGCGGCCGTGGACGGCTACGACGGCCCG
TGGAGGGTCCAGCCCGTGGGGACCATTCTCAGGGCCGCTGCCTCATTCTC
CTTGTCCGCCAACGCAGCCTCGACCATGGCCGTGGACTCGGCATTCCCCG
CCCCCGCCACCGCCGCCACCGCAGCGGGCCCAGTGGGCAACCATCGTCAG
GACACCTCCCAGAGGCCCAGGGCTGAGCCCAAGACCGGTCCCGAGGCCGG
GCTCAAGGCAAGGGGCAGGGCCAAAGCCGGGGTGGAAGCTGGTGAAGGAG
GGGAAACAGCAGCGGCGCGCGCCGCCGCTGATGCTGAAGCTGCCTCCAAG
TGCGCAGTAGTGCTCTTTCACTCCCGTGGCGACGTCGCCGCGGCCGTGGA
CGGCTACGACGGCCCGTGGAGGGTCCAGCCCGTGGGGACCATTCTCAGGG
CCGCTGCCTCATTCTCCTTGTCCGCCAACGCAGCCTCGACCATGGCCGTG
GACTCGGCATTCCCCGCCCCCGCCACCGCCGCCACCGCAGCGGGCCCAGT
GGGCAACCATCGTCAGGACACCTCCCAGAGGCCCAGGGCTGAGCCCAAGA
CCGGTCCCGAGGCCGGGCTCAAGGCAAGGGGCAGGGCCAAAGCCGGGGTG
GAAGCTGGTGAAGGAGGGGAAACAGCAGCGGCGCGCGCCGCCGCTGATGC
TGAAGCTGCC
back to top