mRNA_S-ischiensis_contig1.1026.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1026.1
Unique NamemRNA_S-ischiensis_contig1.1026.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7082428..7083830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1075
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1026.1prot_S-ischiensis_contig1.1026.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7082565..7083513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.6902595-UTR-S-ischiensis_contig1:7082427..70825641622815358.6902595-UTR-S-ischiensis_contig1:7082427..7082564Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7082428..7082564 +
1695739658.801712-UTR-S-ischiensis_contig1:7082427..70825641695739658.801712-UTR-S-ischiensis_contig1:7082427..7082564Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7082428..7082564 +
1622815358.7253387-UTR-S-ischiensis_contig1:7083513..70838301622815358.7253387-UTR-S-ischiensis_contig1:7083513..7083830Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7083514..7083830 +
1695739658.83789-UTR-S-ischiensis_contig1:7083513..70838301695739658.83789-UTR-S-ischiensis_contig1:7083513..7083830Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7083514..7083830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.70309-CDS-S-ischiensis_contig1:7082564..70827941622815358.70309-CDS-S-ischiensis_contig1:7082564..7082794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7082565..7082794 +
1695739658.8101633-CDS-S-ischiensis_contig1:7082564..70827941695739658.8101633-CDS-S-ischiensis_contig1:7082564..7082794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7082565..7082794 +
1622815358.7158818-CDS-S-ischiensis_contig1:7083122..70835131622815358.7158818-CDS-S-ischiensis_contig1:7083122..7083513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7083123..7083513 +
1695739658.8211365-CDS-S-ischiensis_contig1:7083122..70835131695739658.8211365-CDS-S-ischiensis_contig1:7083122..7083513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7083123..7083513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1026.1

>prot_S-ischiensis_contig1.1026.1 ID=prot_S-ischiensis_contig1.1026.1|Name=mRNA_S-ischiensis_contig1.1026.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=207bp
MSRGLHRASPRKHRCTPVPRKAIGCPDNRDGLHGDHATALHAIAAGRGHG
GFHCGQHCCRLVCGKQLSARICDRGRSVYFLQGLERQAGAEAGRWGRGRF
FRAVGPTQGAKRCTSQKQEHKKQEHQHQQGGGGGGSRGLWQQVLPPHGKE
KGRLRSGGGRRPGLSPCGLRRLEAWQRQAAAQGQVGLWNQKGNQTTRGIQ
LFDVAQ*
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mRNA from alignment at S-ischiensis_contig1:7082428..7083830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1026.1 ID=mRNA_S-ischiensis_contig1.1026.1|Name=mRNA_S-ischiensis_contig1.1026.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1403bp|location=Sequence derived from alignment at S-ischiensis_contig1:7082428..7083830+ (Schizocladia ischiensis KU_0333)
TCGTCGTCCCCTACTCGCGGGGCTCGCTGCTGGGGTGCGGACGGCCCGTC
GGCTCGAGACGTGAGTACAGTTGACCCTACAACAACACATGCCGCACCCT
TCACTCCTTTGCAACCGGACCGTCAGCCGTGTACGCCATGTCTCGCGGGC
TTCATCGCGCGTCCCCCAGAAAACATAGGTGCACACCCGTCCCCAGGAAG
GCGATTGGCTGCCCGGACAACAGGGACGGCCTCCATGGCGATCACGCCAC
TGCCTTGCACGCCATTGCTGCTGGGCGTGGACACGGGGGATTCCACTGTG
GACAGCATTGTTGCCGCCTTGTCTGTGGGAAGCAGCTTTCTGCTCGTATT
TGTGATCGGGGGCGGAGGTGCGTGGCCCGCCGTCACTGGCTGCTTCGACA
AGCCCCGGTTGTGACAATGACACGTGCTCGTGCGCGACTACAGAAACACC
ACCTCTGCCATGGTTTGTACGGCAAGGTGCAGCGCCCGAAAACTGTGCCT
CCGATATTTTGCCCATGACATCCTGGAGGCAGCGTGGGACACAAAAGCAA
GCCCCCTAGAGAATCGGAGCAGCCCCCCAGTCCTGTGATCTTTTCTGGAG
CACCAAATACTGCAATAGCGTCTTGTCGTTTGGGGATACTGAATTGCAAA
GAGCGCCCAGCTGCACTCGCCGTCGCACGCTCTGCTTTCCCGCAGTGTAT
ACTTTCTACAAGGACTGGAGAGACAAGCAGGAGCGGAAGCTGGTCGGTGG
GGACGCGGACGATTTTTCCGTGCTGTCGGGCCGACGCAAGGCGCCAAAAG
GTGCACCAGCCAAAAGCAAGAGCACAAAAAGCAAGAGCACCAGCACCAGC
AGGGCGGCGGCGGCGGCGGATCTAGAGGACTTTGGCAACAGGTACTACCG
CCGCATGGCAAAGAAAAGGGGAGACTCCGGAGCGGCGGAGGGCGACGGCC
AGGATTGAGCCCCTGCGGCCTGCGGCGACTTGAGGCCTGGCAAAGGCAGG
CAGCCGCTCAAGGCCAGGTTGGGCTTTGGAATCAAAAAGGGAATCAGACA
ACTCGCGGCATTCAGCTGTTCGACGTGGCTCAATAGTATGTTAAAACTGT
TGTGCGTCTCGGTACGTCATGGGAGCGTACCCGCCGTAGCTGCAGCGAGC
GACGCGTCTGTGCTGGGCACTCAGCATGAAACACACAGTGTCACGCAGCG
GGGAAAAAAAGGTGGACCGCTGTCGTATGCCTACTGCTGTGCGGACAAGC
CCGTCCTTCAGTTGACTTTTAGTTTTTGACGGTCCAAGCAGCGTTGGCGT
TTGTGTGTAGGGTCTGTTGACAAATGCAGTCTTTGGGAAGTTTAATATAT
ACGAGTATGTACTAATGTTGTGCTTGCCGTAGTCCCGAAACCATTGACCA
CAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7082428..7083830+

>mRNA_S-ischiensis_contig1.1026.1 ID=mRNA_S-ischiensis_contig1.1026.1|Name=mRNA_S-ischiensis_contig1.1026.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1242bp|location=Sequence derived from alignment at S-ischiensis_contig1:7082428..7083830+ (Schizocladia ischiensis KU_0333)
ATGTCTCGCGGGCTTCATCGCGCGTCCCCCAGAAAACATAGGTGCACACC
CGTCCCCAGGAAGGCGATTGGCTGCCCGGACAACAGGGACGGCCTCCATG
GCGATCACGCCACTGCCTTGCACGCCATTGCTGCTGGGCGTGGACACGGG
GGATTCCACTGTGGACAGCATTGTTGCCGCCTTGTCTGTGGGAAGCAGCT
TTCTGCTCGTATTTGTGATCGGGGGCGGAGATGTCTCGCGGGCTTCATCG
CGCGTCCCCCAGAAAACATAGGTGCACACCCGTCCCCAGGAAGGCGATTG
GCTGCCCGGACAACAGGGACGGCCTCCATGGCGATCACGCCACTGCCTTG
CACGCCATTGCTGCTGGGCGTGGACACGGGGGATTCCACTGTGGACAGCA
TTGTTGCCGCCTTGTCTGTGGGAAGCAGCTTTCTGCTCGTATTTGTGATC
GGGGGCGGAGTGTATACTTTCTACAAGGACTGGAGAGACAAGCAGGAGCG
GAAGCTGGTCGGTGGGGACGCGGACGATTTTTCCGTGCTGTCGGGCCGAC
GCAAGGCGCCAAAAGGTGCACCAGCCAAAAGCAAGAGCACAAAAAGCAAG
AGCACCAGCACCAGCAGGGCGGCGGCGGCGGCGGATCTAGAGGACTTTGG
CAACAGGTACTACCGCCGCATGGCAAAGAAAAGGGGAGACTCCGGAGCGG
CGGAGGGCGACGGCCAGGATTGAGCCCCTGCGGCCTGCGGCGACTTGAGG
CCTGGCAAAGGCAGGCAGCCGCTCAAGGCCAGGTTGGGCTTTGGAATCAA
AAAGGGAATCAGACAACTCGCGGCATTCAGCTGTTCGACGTGGCTCAATA
GTGTATACTTTCTACAAGGACTGGAGAGACAAGCAGGAGCGGAAGCTGGT
CGGTGGGGACGCGGACGATTTTTCCGTGCTGTCGGGCCGACGCAAGGCGC
CAAAAGGTGCACCAGCCAAAAGCAAGAGCACAAAAAGCAAGAGCACCAGC
ACCAGCAGGGCGGCGGCGGCGGCGGATCTAGAGGACTTTGGCAACAGGTA
CTACCGCCGCATGGCAAAGAAAAGGGGAGACTCCGGAGCGGCGGAGGGCG
ACGGCCAGGATTGAGCCCCTGCGGCCTGCGGCGACTTGAGGCCTGGCAAA
GGCAGGCAGCCGCTCAAGGCCAGGTTGGGCTTTGGAATCAAAAAGGGAAT
CAGACAACTCGCGGCATTCAGCTGTTCGACGTGGCTCAATAG
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