mRNA_S-ischiensis_contig1.1022.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1022.1
Unique NamemRNA_S-ischiensis_contig1.1022.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1022.1 vs. uniprot
Match: A0A1Y2CWD9_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CWD9_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 1.290e-5
Identity = 33/133 (24.81%), Postives = 61/133 (45.86%), Query Frame = 3 
Query:  936 MTGRATAKRMDRFADYPGHPDLSVEATAERLHDFLQTRADPATRKQRLLAEFKKWDVEFRADSAFSAAYVRGGEDMDPVEVAAVMSLTAHLFSWSHVAWSNLHVKAEGKLRGKVFAGRLSWEDAFEEASLYVD 1334
            ++ R  ++ + R   YP + +     T   +   +        R+ RL     +  +E R DS F   ++     ++  EV A+M +T+ +FS+ H+AWSNLH + E  +  +VF   + W +A    +   D
Sbjct:   91 ISDRQFSEILGRLERYPKYVERRKMWTNTIISYLISQSQSIPQRRARLEEALSQEGLELRKDSQFCKEFIEKPLCIEVEEVVAIMEITSDIFSYGHIAWSNLHSEMEVAVLKQVFENGMGWMEAVRAVTTSAD 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y2CWD9_9FUNG1.290e-524.81Uncharacterized protein n=1 Tax=Rhizoclosmatium gl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7044075..7048306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted protein
Ec32 orthologEc-16_004750.1
Exons1
Model size4232
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1022.1prot_S-ischiensis_contig1.1022.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7044293..7045537 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.2670758-UTR-S-ischiensis_contig1:7044074..70442921622815476.2670758-UTR-S-ischiensis_contig1:7044074..7044292Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7044075..7044292 +
1695739723.5843327-UTR-S-ischiensis_contig1:7044074..70442921695739723.5843327-UTR-S-ischiensis_contig1:7044074..7044292Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7044075..7044292 +
1622815476.2922225-UTR-S-ischiensis_contig1:7045537..70483061622815476.2922225-UTR-S-ischiensis_contig1:7045537..7048306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7045538..7048306 +
1695739723.607145-UTR-S-ischiensis_contig1:7045537..70483061695739723.607145-UTR-S-ischiensis_contig1:7045537..7048306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7045538..7048306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.2811568-CDS-S-ischiensis_contig1:7044292..70455371622815476.2811568-CDS-S-ischiensis_contig1:7044292..7045537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7044293..7045537 +
1695739723.5976076-CDS-S-ischiensis_contig1:7044292..70455371695739723.5976076-CDS-S-ischiensis_contig1:7044292..7045537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7044293..7045537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1022.1

>prot_S-ischiensis_contig1.1022.1 ID=prot_S-ischiensis_contig1.1022.1|Name=mRNA_S-ischiensis_contig1.1022.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=415bp
MKLCLPVEVRVLAKQAKAAKKTKAASRDAERQALEQQERLASKTKKDSER
EAAQQQRLASVKRKYGIDFNDVPGPLAEVVLGDYTTTARKKPNTSLTAAR
QGFAIFQVACRDVEAESFRAELSFYDGPWDVNAATAALVHFYRGRGNPPA
GAGSTGPSWAGTFLALQGLVRRVVVAEGARVLSFLDDQDKEEAKAALPGV
LRQLVEQGDEGVLGGPLRRLLLHKALRARGVAEQDAQELMTGRATAKRMD
RFADYPGHPDLSVEATAERLHDFLQTRADPATRKQRLLAEFKKWDVEFRA
DSAFSAAYVRGGEDMDPVEVAAVMSLTAHLFSWSHVAWSNLHVKAEGKLR
GKVFAGRLSWEDAFEEASLYVDRNADRYNRHNYSDDDYDDYGDYSDYDDR
EFYRHGRHGRRRWW*
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mRNA from alignment at S-ischiensis_contig1:7044075..7048306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1022.1 ID=mRNA_S-ischiensis_contig1.1022.1|Name=mRNA_S-ischiensis_contig1.1022.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4232bp|location=Sequence derived from alignment at S-ischiensis_contig1:7044075..7048306+ (Schizocladia ischiensis KU_0333)
TGACAAAATAATGGATTGCCTGTCCTTGTCGGAAGGCACCCATCGGGGGC
CAAGTGGATGGTATTACGTGCACCCTTGTCTGCGCAGCTTGCGCTGAATC
CACGAACGAGGGTCTGCTCTGCCAGAGCGAAGCGGCAGCCAAGGGGGCCC
CGAAACGGCAGTTCGAGAGCCTGGACTACAAAACAAAGCAAAACCCCGTG
TATGCGACTGCGAGTCCCATGAAGCTTTGCCTTCCCGTGGAGGTGCGCGT
GCTAGCGAAACAGGCCAAAGCCGCGAAAAAGACCAAAGCCGCCAGCAGAG
ACGCAGAGAGACAGGCCTTGGAGCAGCAAGAGCGGCTGGCCTCTAAAACA
AAGAAGGACTCTGAGAGAGAGGCTGCGCAGCAGCAACGGCTGGCCTCTGT
GAAGCGCAAGTACGGCATCGACTTCAACGACGTCCCCGGTCCCCTGGCTG
AGGTCGTCCTGGGAGACTACACAACGACAGCACGCAAAAAGCCCAACACT
TCACTCACGGCGGCCCGGCAAGGCTTTGCTATCTTTCAGGTGGCCTGCCG
GGATGTCGAGGCCGAGTCCTTCCGCGCGGAGCTGTCCTTCTACGACGGAC
CCTGGGACGTGAACGCCGCAACGGCCGCCCTGGTGCACTTCTACCGTGGC
CGGGGCAACCCGCCGGCCGGGGCCGGGTCCACCGGCCCAAGCTGGGCTGG
CACCTTCCTCGCCCTTCAGGGCCTTGTGCGCCGGGTTGTGGTTGCGGAGG
GCGCCCGGGTGCTGTCGTTCCTCGACGACCAAGACAAGGAGGAGGCCAAG
GCGGCCCTGCCGGGGGTCCTGCGCCAGCTGGTGGAGCAGGGCGACGAGGG
GGTGCTGGGCGGACCCCTGCGCCGCCTCCTGCTGCACAAGGCGCTGAGGG
CGCGGGGGGTGGCGGAGCAGGACGCGCAGGAGCTCATGACCGGCCGGGCC
ACGGCCAAGAGGATGGACCGCTTCGCGGACTACCCCGGGCACCCCGACCT
GAGCGTGGAAGCCACTGCGGAGCGCCTGCACGACTTCCTCCAGACCCGGG
CCGACCCGGCCACCCGCAAGCAACGCCTGCTGGCAGAGTTCAAGAAGTGG
GATGTGGAGTTCCGCGCCGACAGCGCCTTCTCCGCGGCGTACGTGCGCGG
GGGCGAGGACATGGACCCGGTGGAGGTGGCGGCCGTCATGTCGCTGACTG
CCCACCTCTTCTCGTGGAGCCACGTGGCCTGGAGCAATCTGCATGTCAAG
GCCGAGGGGAAGCTGCGGGGGAAGGTGTTTGCGGGCAGGCTGTCGTGGGA
GGACGCGTTCGAAGAGGCCAGCCTGTACGTGGACCGCAACGCCGACAGGT
ACAACAGGCACAACTACTCTGACGACGACTACGACGACTACGGCGACTAC
TCCGACTACGACGACCGCGAATTCTACAGGCACGGCCGCCACGGCCGTCG
CCGCTGGTGGTAGCATACCTCCAGGGGTGTGTCAATATAGGTGGGCACGG
CGGCGGCGGCGGGGCCCGGGCTGGTCAAGGGTAGCATCCGAGGCCTTGCG
TATGTACGTGCTTGGAAGTACGGTTTTCAGGCTGCGCGACAGGTTACTCG
CCAGGCGGTGAACGGGGCGACTCCGACCGCACGGACTCTTTGCTTGCTGT
AGTCGTACTTTGAACTTGGTCTCCACCCCACATTGCCAAACATGCAGTAC
ATATGTGTTGTTAACTCGAGCATCGGCGCACAGCCCGCGCGAGTGTATTA
TTGTCGTGCCTCCAGGTACGTGTACGTGTGATGAGTGCTTCATTGTACAT
ATACTACAATGTGTGGATACGAAGTATGTTCGGTGGTACTTCGCAGTACT
TGGTATCATTGCTCTAGCTGTACCCTGACAGGGGTGTTCCCCGAGTGGCT
GGCTGGCGGATGGACGGCCCTTGCGTCCGCCCGCTGGCTAGCGGCAATCG
CATCCGGTGCGCTGAGAGGTACATGCATGACAGTGAGTACACCAGACTCC
GTGTACTTCATTTCCAGGTTTTTATCGTTTTTTTCCCTCTCCCCCTCCCC
CCTCCCCCACGCGGCAGATTGAGAGTAGCACCCAGAAGTCCTAGGCATTA
GGATGCAGTACAACGACCATACATGTACGACATACGAAGTACTTCGAAGT
AGAGTACATTAGTACCGGATACTCGAGTGCACGGTTAAGTTACACCACTT
GTCTGGCCTGGGCGTCCGCCGGTACCTACTTTGTTGGCCGAGCTGCGCCG
CCTTCAGTGTAGTAAATAAATAGCGCAGAGCTTTGCATTGTATGCTTGTA
TGCCTGCTTGGAATGATGCGCTCCCGCAGGGGTACTTGTCTTCCCCGTGC
GCACGCTGCTGCTACGGCTGTGGCCCGCCCGCGGCGCTCATGGATGTCAA
CAAGTTGCGCGCAGAGTGTCGCCGTACGCCTGTGCGCTTGGCATTTTCAG
AGCTTGTTCTCCCCAAGAACTTCCACGATAGAAGCAGTTCTGTACTTGTA
CACACACTGTGGTGCCACGTTCTTGGCAACGTGAGAGCTGCTGGTCGAAG
CTCCACGCAAGCTTATACTTTGAAGTACTTTGAAGTACAACCCGCGAGCT
TTGCTCGCGCCCTGTAGTGCAGCAGTCAGCGGGCGAAACAGGGCAGTGGC
CCAGGCTGCAGGGCCGCGCAGGTCTGGTCCCACTGGCCGGGTCCGGTGCC
CTGGTTGTCACAGCGCGGCCCGCCGCACAGTGTACTTGTTTCAGATCCCG
TGGGCTTGTCGTGTTGTTGCCGGCTTTGAGAGCGTTCCGTACATGTAAGG
GAGCAGCAGATACTCCATGTGTGTTCACGGGCACCCATTTTCAAAAACGT
GCATTTGTTGTGTCTCCCCTTTGTTTGTTATCCCCCCGGCCCAGCGCGCC
TGTCGCTTCCTTAAGTACAGTAGGTTGGTGTGCGGCCTCGCGCTGCATGT
CACCTGGGTGTGGACCGGCCCGTCAGTTTGCCGGCCTGCACGTTTACACT
AGCACCGTCTAACACTGATGGGTTAAAACTTGTAGGTAACTGGAGCACAA
TGTCATATTCATTGTGGATGCTGCAAGACATGCTGCTAACCGTTGTCTGT
GCTTGTGCTACGAATGCTTGCCGCGGCCCGAGTCCAATCATAGCTTCCGC
TCAGGCAATAGGGACGGAGCCTGAGCAACCCCCCCCCCCTGTGCCTTTTA
GTGTCTGCGCTCGTTATTTTTCAATGCCGCTGTCATGGTCTCTCTTCTTT
CCCACTCGCTTGCTGTCTTCTTGCAGAACACAGCAGTCTTCACACGTTTG
TGAGGATAGAAAAGTTACTCTACAAGCGATAGCAAGAGAGACATAGTACA
TGCACACTTTTTTGTTTTTGGCATGAAGATTTTTTATGTTCTGGGCTCCA
CCAGAGATTCTGAAGCCCTTCCCTCGAGGGCAAATAATAGAGAGAATACC
AGAGGAAACGGGAGTCCGTCTTCCCACTTGTGTACGCTTGAATATGCTCG
AGTTACTAATGGGGCTCAGCTGATGAGTGGTCTGTCAACGTCGAGGATGC
CAGCACCAGCACGCGCGGCCCGGCCAGCAACAGCAGCAGCCATCGCGTTG
AAATCAACCAAGCAGCAGCTAGGCTGCGTGCGCACCGTCCTGAAAACAAT
GGGCGCGGCCCACTGCATCGTGATACTTAGGTACACCATCCCGCCAATGC
CTCGGAACAAACAAGGCACTCGGCGGGCTTTTTTGTGCCAGCCAAGTTGT
GAGCACTTCGTAGTACGTACTTCGAAGTACTTCCGAAGTTCTTCAAAGTA
CGTTTCAAGGTACCACGCGCCGCACACTGCCACAACTCGCGCGGGTGGAA
TCTGTGCCGTGGGGCGGGCCAGTATCGTGACAGCCCACGGCACCGGAGCC
TGCCAGTGCCACTGAGACAAACCCTGCGCAGCCCTGCAGGTACTGCGCCG
TTTCGGTGGCCACTTGCAGCAAAGAAAGCAATGTCGCATGCTGTACATGC
TTGGGTGGAGATTAGACCGGAATCTCTCACGCTGAGAAAATGGAGAGCTC
TCAGCACTGGGATCTGTATAGCTACTCTGTAGCAATTCGTACAGAAGTAC
AGCACTGCGAAGAAGTAGGTACAGTACTGGTACTCGTACTTACATAGGGC
CTCGAGTAGTGATTCATACAAATTGTATAGACAAGAAGGGCTTCTGGTGC
GATCCCCACCTTAGGTTGTTTGGACGGGGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7044075..7048306+

>mRNA_S-ischiensis_contig1.1022.1 ID=mRNA_S-ischiensis_contig1.1022.1|Name=mRNA_S-ischiensis_contig1.1022.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2490bp|location=Sequence derived from alignment at S-ischiensis_contig1:7044075..7048306+ (Schizocladia ischiensis KU_0333)
ATGAAGCTTTGCCTTCCCGTGGAGGTGCGCGTGCTAGCGAAACAGGCCAA
AGCCGCGAAAAAGACCAAAGCCGCCAGCAGAGACGCAGAGAGACAGGCCT
TGGAGCAGCAAGAGCGGCTGGCCTCTAAAACAAAGAAGGACTCTGAGAGA
GAGGCTGCGCAGCAGCAACGGCTGGCCTCTGTGAAGCGCAAGTACGGCAT
CGACTTCAACGACGTCCCCGGTCCCCTGGCTGAGGTCGTCCTGGGAGACT
ACACAACGACAGCACGCAAAAAGCCCAACACTTCACTCACGGCGGCCCGG
CAAGGCTTTGCTATCTTTCAGGTGGCCTGCCGGGATGTCGAGGCCGAGTC
CTTCCGCGCGGAGCTGTCCTTCTACGACGGACCCTGGGACGTGAACGCCG
CAACGGCCGCCCTGGTGCACTTCTACCGTGGCCGGGGCAACCCGCCGGCC
GGGGCCGGGTCCACCGGCCCAAGCTGGGCTGGCACCTTCCTCGCCCTTCA
GGGCCTTGTGCGCCGGGTTGTGGTTGCGGAGGGCGCCCGGGTGCTGTCGT
TCCTCGACGACCAAGACAAGGAGGAGGCCAAGGCGGCCCTGCCGGGGGTC
CTGCGCCAGCTGGTGGAGCAGGGCGACGAGGGGGTGCTGGGCGGACCCCT
GCGCCGCCTCCTGCTGCACAAGGCGCTGAGGGCGCGGGGGGTGGCGGAGC
AGGACGCGCAGGAGCTCATGACCGGCCGGGCCACGGCCAAGAGGATGGAC
CGCTTCGCGGACTACCCCGGGCACCCCGACCTGAGCGTGGAAGCCACTGC
GGAGCGCCTGCACGACTTCCTCCAGACCCGGGCCGACCCGGCCACCCGCA
AGCAACGCCTGCTGGCAGAGTTCAAGAAGTGGGATGTGGAGTTCCGCGCC
GACAGCGCCTTCTCCGCGGCGTACGTGCGCGGGGGCGAGGACATGGACCC
GGTGGAGGTGGCGGCCGTCATGTCGCTGACTGCCCACCTCTTCTCGTGGA
GCCACGTGGCCTGGAGCAATCTGCATGTCAAGGCCGAGGGGAAGCTGCGG
GGGAAGGTGTTTGCGGGCAGGCTGTCGTGGGAGGACGCGTTCGAAGAGGC
CAGCCTGTACGTGGACCGCAACGCCGACAGGTACAACAGGCACAACTACT
CTGACGACGACTACGACGACTACGGCGACTACTCCGACTACGACGACCGC
GAATTCTACAGGCACGGCCGCCACGGCCGTCGCCGCTGGTGGTAGATGAA
GCTTTGCCTTCCCGTGGAGGTGCGCGTGCTAGCGAAACAGGCCAAAGCCG
CGAAAAAGACCAAAGCCGCCAGCAGAGACGCAGAGAGACAGGCCTTGGAG
CAGCAAGAGCGGCTGGCCTCTAAAACAAAGAAGGACTCTGAGAGAGAGGC
TGCGCAGCAGCAACGGCTGGCCTCTGTGAAGCGCAAGTACGGCATCGACT
TCAACGACGTCCCCGGTCCCCTGGCTGAGGTCGTCCTGGGAGACTACACA
ACGACAGCACGCAAAAAGCCCAACACTTCACTCACGGCGGCCCGGCAAGG
CTTTGCTATCTTTCAGGTGGCCTGCCGGGATGTCGAGGCCGAGTCCTTCC
GCGCGGAGCTGTCCTTCTACGACGGACCCTGGGACGTGAACGCCGCAACG
GCCGCCCTGGTGCACTTCTACCGTGGCCGGGGCAACCCGCCGGCCGGGGC
CGGGTCCACCGGCCCAAGCTGGGCTGGCACCTTCCTCGCCCTTCAGGGCC
TTGTGCGCCGGGTTGTGGTTGCGGAGGGCGCCCGGGTGCTGTCGTTCCTC
GACGACCAAGACAAGGAGGAGGCCAAGGCGGCCCTGCCGGGGGTCCTGCG
CCAGCTGGTGGAGCAGGGCGACGAGGGGGTGCTGGGCGGACCCCTGCGCC
GCCTCCTGCTGCACAAGGCGCTGAGGGCGCGGGGGGTGGCGGAGCAGGAC
GCGCAGGAGCTCATGACCGGCCGGGCCACGGCCAAGAGGATGGACCGCTT
CGCGGACTACCCCGGGCACCCCGACCTGAGCGTGGAAGCCACTGCGGAGC
GCCTGCACGACTTCCTCCAGACCCGGGCCGACCCGGCCACCCGCAAGCAA
CGCCTGCTGGCAGAGTTCAAGAAGTGGGATGTGGAGTTCCGCGCCGACAG
CGCCTTCTCCGCGGCGTACGTGCGCGGGGGCGAGGACATGGACCCGGTGG
AGGTGGCGGCCGTCATGTCGCTGACTGCCCACCTCTTCTCGTGGAGCCAC
GTGGCCTGGAGCAATCTGCATGTCAAGGCCGAGGGGAAGCTGCGGGGGAA
GGTGTTTGCGGGCAGGCTGTCGTGGGAGGACGCGTTCGAAGAGGCCAGCC
TGTACGTGGACCGCAACGCCGACAGGTACAACAGGCACAACTACTCTGAC
GACGACTACGACGACTACGGCGACTACTCCGACTACGACGACCGCGAATT
CTACAGGCACGGCCGCCACGGCCGTCGCCGCTGGTGGTAG
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