mRNA_S-ischiensis_contig1.1016.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1016.1
Unique NamemRNA_S-ischiensis_contig1.1016.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7012265..7013503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1008
Cds size576
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1016.1prot_S-ischiensis_contig1.1016.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7012695..7013503 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.6208951-UTR-S-ischiensis_contig1:7012264..70126941622815358.6208951-UTR-S-ischiensis_contig1:7012264..7012694Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7012265..7012694 +
1695739658.7724411-UTR-S-ischiensis_contig1:7012264..70126941695739658.7724411-UTR-S-ischiensis_contig1:7012264..7012694Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7012265..7012694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.6336672-CDS-S-ischiensis_contig1:7012694..70130011622815358.6336672-CDS-S-ischiensis_contig1:7012694..7013001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7012695..7013001 +
1695739658.7829564-CDS-S-ischiensis_contig1:7012694..70130011695739658.7829564-CDS-S-ischiensis_contig1:7012694..7013001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7012695..7013001 +
1622815358.6489909-CDS-S-ischiensis_contig1:7013234..70135031622815358.6489909-CDS-S-ischiensis_contig1:7013234..7013503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7013235..7013503 +
1695739658.7937438-CDS-S-ischiensis_contig1:7013234..70135031695739658.7937438-CDS-S-ischiensis_contig1:7013234..7013503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7013235..7013503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1016.1

>prot_S-ischiensis_contig1.1016.1 ID=prot_S-ischiensis_contig1.1016.1|Name=mRNA_S-ischiensis_contig1.1016.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=192bp
MLCVCPRCLHPLPFKPILTLATCLLLSLRAAPVAHRPHRPQQAQQRPVQP
SLHEGQAQPQPQPQAPRAQGPVHRQAQGVVVRGARQPGPAAVAAAPDPAG
AGGRARAVRGRARARREEEGAHAEATRRRVRTPACLLEGWWAASQAVHAS
AGVSDMGRPLPGQRIGREREDGGAACPGPQGQQPGQQSRGQL
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mRNA from alignment at S-ischiensis_contig1:7012265..7013503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1016.1 ID=mRNA_S-ischiensis_contig1.1016.1|Name=mRNA_S-ischiensis_contig1.1016.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1239bp|location=Sequence derived from alignment at S-ischiensis_contig1:7012265..7013503+ (Schizocladia ischiensis KU_0333)
TCCAGCTGCGACGATGAGGATGGGCACGAGGACGAGTCTGCCTCCGACAA
GGAGGAGGAGGACGGGGAGGATGAGCAGGGCCAGGACATGGAAGGAGAGG
TGTGGAGGCCGGTACTGCACCGGTTCCTGCCAGAGGGGGCGCCGGCGCCG
GGAAAGCGGGTGCTCTATGAGGTGTCCAACCTGGGTATAGCCCGCTCACT
GCAGAAGGACACCCCGCGCCTGCTGAAGCCAATCCTACACCAGAACGGGT
ACCACCGCTACAGCTTGTGCTACGGAGGCCACATAAAGCCAGTGTTTGCC
CACGACCTGGTGCTCGGCACCTTCGAGGGGCCCTACCCGGGACGGACGGT
ACAACACTCCGACTGTACTCCTGGCCGGGGAATGGCCTGGCTTGTGCACG
TTTCTGAATGGCTGCCACTGCCTTACACCCATGCTGTGCGTGTGCCCCAG
GTGTCTGCACCCCCTGCCCTTCAAACCGATTCTGACGCTCGCAACATGCT
TGTTGCTTTCTCTTCGAGCAGCACCTGTGGCACATCGACCACATCGACCG
CAACAAGCACAACAACGCCCTGTCCAACCTTCGCTACATGAAGGCCAAGC
ACAACCTCAGCCACAGCCGCAAGCCCCGCGTGCGCAAGGGCCCGTCCACC
GGCAAGCCCAGGGCGTGGTCGTACGTGGCGCCAGACAGCCCGGACCGGCT
GCAGTGGCGGCAGCACCTGACCCTGCCGGAGCTGGAGGTGAGCATGTACC
TCGCGCCGCATTCGCCGGGGTGGCATTGTGGCCTGGTCTTTGTTGGTGGG
GCACCCGCCGCTGCAGTAGGTGCTTCGTGGCTCGAGACGGCACTGAGTTT
TGCGAGCAACACCACCTTTACCCGCCTGCTGCCGGCGGCATCCGTGTGCC
GCACCCCGACGCCCGCCCCGCCCCCGTCCCGATGCTGGCGGCATCGCTGG
TCCCCGCGCGGGTGGCCAAGGAAGGGCACGTGCGGTACGCGGCCGGGCAC
GCGCCCGGCGGGAAGAAGAAGGGGCACATGCTGAAGCCACGCGCCGACGC
GTCCGGACACCTGCATGTCTGCTGGAGGGCTGGTGGGCGGCAAGTCAGGC
AGTTCATGCATCGGCTGGTGTATCGGACATGGGTAGGCCACTTCCCGGCC
AACGAATCGGCCGTGAACGGGAAGATGGCGGAGCGGCTTGTCCTGGACCA
CAAGGACAACAACCAGGCCAACAATCACGCGGACAACTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7012265..7013503+

>mRNA_S-ischiensis_contig1.1016.1 ID=mRNA_S-ischiensis_contig1.1016.1|Name=mRNA_S-ischiensis_contig1.1016.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1152bp|location=Sequence derived from alignment at S-ischiensis_contig1:7012265..7013503+ (Schizocladia ischiensis KU_0333)
ATGCTGTGCGTGTGCCCCAGGTGTCTGCACCCCCTGCCCTTCAAACCGAT
TCTGACGCTCGCAACATGCTTGTTGCTTTCTCTTCGAGCAGCACCTGTGG
CACATCGACCACATCGACCGCAACAAGCACAACAACGCCCTGTCCAACCT
TCGCTACATGAAGGCCAAGCACAACCTCAGCCACAGCCGCAAGCCCCGCG
TGCGCAAGGGCCCGTCCACCGGCAAGCCCAGGGCGTGGTCGTACGTGGCG
CCAGACAGCCCGGACCGGCTGCAGTGGCGGCAGCACCTGACCCTGCCGGA
GCTGGAGATGCTGTGCGTGTGCCCCAGGTGTCTGCACCCCCTGCCCTTCA
AACCGATTCTGACGCTCGCAACATGCTTGTTGCTTTCTCTTCGAGCAGCA
CCTGTGGCACATCGACCACATCGACCGCAACAAGCACAACAACGCCCTGT
CCAACCTTCGCTACATGAAGGCCAAGCACAACCTCAGCCACAGCCGCAAG
CCCCGCGTGCGCAAGGGCCCGTCCACCGGCAAGCCCAGGGCGTGGTCGTA
CGTGGCGCCAGACAGCCCGGACCGGCTGCAGTGGCGGCAGCACCTGACCC
TGCCGGAGCTGGAGGAAGGGCACGTGCGGTACGCGGCCGGGCACGCGCCC
GGCGGGAAGAAGAAGGGGCACATGCTGAAGCCACGCGCCGACGCGTCCGG
ACACCTGCATGTCTGCTGGAGGGCTGGTGGGCGGCAAGTCAGGCAGTTCA
TGCATCGGCTGGTGTATCGGACATGGGTAGGCCACTTCCCGGCCAACGAA
TCGGCCGTGAACGGGAAGATGGCGGAGCGGCTTGTCCTGGACCACAAGGA
CAACAACCAGGCCAACAATCACGCGGACAACTTGAAGGGCACGTGCGGTA
CGCGGCCGGGCACGCGCCCGGCGGGAAGAAGAAGGGGCACATGCTGAAGC
CACGCGCCGACGCGTCCGGACACCTGCATGTCTGCTGGAGGGCTGGTGGG
CGGCAAGTCAGGCAGTTCATGCATCGGCTGGTGTATCGGACATGGGTAGG
CCACTTCCCGGCCAACGAATCGGCCGTGAACGGGAAGATGGCGGAGCGGC
TTGTCCTGGACCACAAGGACAACAACCAGGCCAACAATCACGCGGACAAC
TT
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