mRNA_S-ischiensis_contig1.1014.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1014.1
Unique NamemRNA_S-ischiensis_contig1.1014.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7007353..7008329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.0352657-CDS-S-ischiensis_contig1:7007352..70075081622815476.0352657-CDS-S-ischiensis_contig1:7007352..7007508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7007353..7007508 +
1695739723.4424827-CDS-S-ischiensis_contig1:7007352..70075081695739723.4424827-CDS-S-ischiensis_contig1:7007352..7007508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7007353..7007508 +
1622815476.0476122-CDS-S-ischiensis_contig1:7008214..70083281622815476.0476122-CDS-S-ischiensis_contig1:7008214..7008328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7008215..7008328 +
1695739723.4557824-CDS-S-ischiensis_contig1:7008214..70083281695739723.4557824-CDS-S-ischiensis_contig1:7008214..7008328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7008215..7008328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1014.1prot_S-ischiensis_contig1.1014.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7007353..7008328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1014.1

>prot_S-ischiensis_contig1.1014.1 ID=prot_S-ischiensis_contig1.1014.1|Name=mRNA_S-ischiensis_contig1.1014.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
EELERQAGGWWELLGAWLLFREPEARGERLQEILRLCVQAKREAPQESLV
LETLAQAAVGNAAPALRYCGEHGDSLPLSACSAHLAHLLA
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mRNA from alignment at S-ischiensis_contig1:7007353..7008329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1014.1 ID=mRNA_S-ischiensis_contig1.1014.1|Name=mRNA_S-ischiensis_contig1.1014.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=977bp|location=Sequence derived from alignment at S-ischiensis_contig1:7007353..7008329+ (Schizocladia ischiensis KU_0333)
GAGGAGCTGGAGCGGCAGGCTGGGGGGTGGTGGGAGCTGCTGGGGGCCTG
GCTGCTTTTCCGGGAGCCCGAGGCAAGGGGGGAGCGGCTGCAGGAGATCC
TGCGGCTCTGTGTGCAGGCGAAGAGGGAGGCACCCCAGGAGTCGCTGGTC
TTGGAGGTGAGCCCCAGGTGCCCTTGCGCCGTCGCACAGTGGCAGGCAGG
GGGCTTTGCCGGCCAGCGGCGAGTGCGGGCGTGTGTCGTGTGCGAGTGCG
TGTTCACGTGGATGATTCTGTTTTGAGCGCTGGGTGGAGGGAGCTCCACG
GGAGGGGCACTGCCCGGGGCGGGGGGGGGCGGGGTCTTGCAGTGGATGGC
GTTCACAGCCCTAGCCAGAGTGTTGATGCTGCTCTGCCCGCTCCGCGGGT
CATTTGGGGGGAGTTTAGCGCGGGGCGCTGGCCAACGCCAGTCATGGGGG
AGTGGGCAGTGGGCGGCAGGGATGTGCCGCGTGCTTTGCGGGGAGGTGAA
TTATCTCTGCTGCAGTTCGAGATGCTTGTATGTAGGTGTGCAATATACAG
ACTCACGTTGTGCTCGAGTGGGCCAAGAGACCATTGGCCGCGCGACCTCT
TCCGAGATTGGACCAATCGTGCAGTAATCGCACTCTTGCCCTCGCCGACG
CTGACGATCGCTTGACTGCCAGATCCCCCCCGCACACCACGCCTTCCCTC
TTCCGTTTGTGGGCTTCCCCCTCGGCCCTGGCCCAAGAGATAGCGAATTC
CACGCTTGCCCCTCAGTTAAGTTACACGTACCAACCGCGTGCCACCAGCC
CCCCCCTCTAGCTTAAGCTACACGCACGCACCTGGTTGTGCCCCCCCCCC
CCTCCCCGCCAGACGCTCGCGCAGGCCGCCGTCGGGAATGCGGCACCAGC
CCTGCGCTACTGTGGCGAGCACGGCGACTCCCTCCCGCTCTCCGCCTGCT
CCGCCCACCTGGCCCACCTCCTCGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7007353..7008329+

>mRNA_S-ischiensis_contig1.1014.1 ID=mRNA_S-ischiensis_contig1.1014.1|Name=mRNA_S-ischiensis_contig1.1014.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig1:7007353..7008329+ (Schizocladia ischiensis KU_0333)
GAGGAGCTGGAGCGGCAGGCTGGGGGGTGGTGGGAGCTGCTGGGGGCCTG
GCTGCTTTTCCGGGAGCCCGAGGCAAGGGGGGAGCGGCTGCAGGAGATCC
TGCGGCTCTGTGTGCAGGCGAAGAGGGAGGCACCCCAGGAGTCGCTGGTC
TTGGAGGAGGAGCTGGAGCGGCAGGCTGGGGGGTGGTGGGAGCTGCTGGG
GGCCTGGCTGCTTTTCCGGGAGCCCGAGGCAAGGGGGGAGCGGCTGCAGG
AGATCCTGCGGCTCTGTGTGCAGGCGAAGAGGGAGGCACCCCAGGAGTCG
CTGGTCTTGGAGACGCTCGCGCAGGCCGCCGTCGGGAATGCGGCACCAGC
CCTGCGCTACTGTGGCGAGCACGGCGACTCCCTCCCGCTCTCCGCCTGCT
CCGCCCACCTGGCCCACCTCCTCGCCACGCTCGCGCAGGCCGCCGTCGGG
AATGCGGCACCAGCCCTGCGCTACTGTGGCGAGCACGGCGACTCCCTCCC
GCTCTCCGCCTGCTCCGCCCACCTGGCCCACCTCCTCGCC
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