mRNA_S-ischiensis_contig1.1011.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1011.1
Unique NamemRNA_S-ischiensis_contig1.1011.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6989778..6992959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size311
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1011.1prot_S-ischiensis_contig1.1011.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6989778..6992957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.2444112-CDS-S-ischiensis_contig1:6989777..69899361622815358.2444112-CDS-S-ischiensis_contig1:6989777..6989936Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6989778..6989936 +
1695739658.7376077-CDS-S-ischiensis_contig1:6989777..69899361695739658.7376077-CDS-S-ischiensis_contig1:6989777..6989936Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6989778..6989936 +
1622815358.2591324-CDS-S-ischiensis_contig1:6991895..69920001622815358.2591324-CDS-S-ischiensis_contig1:6991895..6992000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6991896..6992000 +
1695739658.7488096-CDS-S-ischiensis_contig1:6991895..69920001695739658.7488096-CDS-S-ischiensis_contig1:6991895..6992000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6991896..6992000 +
1622815358.2706242-CDS-S-ischiensis_contig1:6992912..69929571622815358.2706242-CDS-S-ischiensis_contig1:6992912..6992957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6992913..6992957 +
1695739658.757001-CDS-S-ischiensis_contig1:6992912..69929571695739658.757001-CDS-S-ischiensis_contig1:6992912..6992957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6992913..6992957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1011.1

>prot_S-ischiensis_contig1.1011.1 ID=prot_S-ischiensis_contig1.1011.1|Name=mRNA_S-ischiensis_contig1.1011.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
APSPRAGAGAGPKGAKKGGKQKDRERELKTGQARKRPQDSSGLEHRPRSH
HKKVPLPALAVDDLSALLKVGQEDNDPHLSLALANMEQAGELGGSMDSPS
GAG
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mRNA from alignment at S-ischiensis_contig1:6989778..6992959+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1011.1 ID=mRNA_S-ischiensis_contig1.1011.1|Name=mRNA_S-ischiensis_contig1.1011.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3182bp|location=Sequence derived from alignment at S-ischiensis_contig1:6989778..6992959+ (Schizocladia ischiensis KU_0333)
GCGCCGTCGCCCCGGGCCGGGGCCGGGGCAGGCCCCAAGGGCGCGAAGAA
GGGGGGGAAGCAGAAGGACCGGGAACGGGAGCTAAAGACGGGGCAGGCTC
GGAAGCGGCCGCAGGATTCGTCGGGCCTGGAGCACCGGCCGCGGAGCCAC
CACAAGAAGGTGTGTGTGCGTGCGCGCGCATGTGTTTATGCGTGAACGTG
CTGCAGCGGCCGTTCACGCTGCCTGGGGAGGCCGGGAAACCTCGGTCTCT
GCGCTGCCACTCCTTCATTTTCCCCTGTTTTCTGCTTGTGTCGTTGGTGG
TATCTGTGTGTACTGGCAGCACAATGACTGCGTGGATGTGTCCTTGCCGT
GGGTTGGCCCAGAGACCATTGACCACGTAGCCTATTGCGAGCTCGGAGAA
AGTTCATACGAGTACTCGTATACGGCGTATATATCTAGTCACGCTGTGGT
TGCCGTAGTCCAGAGACCATTGACCGTGCGCCATGGAGGGCCGAGCAATA
CATCTACTCCGAAGTATCCATCTCTCTATATATATGTGTGCGTGTATACA
GTAGTATATATATGTACTCAACGTTGTGCTTGCCGTAGTCCCGGGACCAT
TGACCACGCGCCTCGATCGAGACGGAGCGGGCCCCGCCGGGGTGGGAGGG
GGTGGCCACACCGCCTCTGGGGCGGTGGTGTGGCCAAGTCCATATCCCCC
CCATCCCCGACTCCTGAGAGTCCGGGCGGGGGGGGGGCTCCCCTGCTAGG
TCGGGGCCCAGCATGGGTGGGGGGTCCCTCACCGTGCCGGGGCACGGCGG
GGGGAGATCCAAGGTACACATCTATGCTATCTACTCACTCCAACCGGGCA
CTCCACACAGACACAAGAAACTCTTCCACAGCACACTCGACACGACTCTG
TTTCTCTGCTGGCCAACCAGACTTCTCACCTGATGGATCCAGGAGGGCTA
TGATACGATGGCTATGGGTTGAGTCCCTAACAATTTCGTGAATATTTTGC
GGGAGTGCGGCTCTGCGCGCGGTGTGTAGGGCCACTCTGGCGGCAAGGTA
TTGGGGGCACTCAAGCATTGCGTGGCTAACTGTCTCATCGTCTGATGGGC
AGGCCTTGCACTTGGTGGTCTGGTTCCCGGCCTCCTGTGAACCCCACACT
GACCTGCCCGCCAGTACCGGTATAGATTCCGACCGAATCAGAAACATGAG
GCGGGTTCTGTAGTCGGGCTTCCCTCGCAGGTATGGTTTGATGTGACCTA
GTTCCCGGGCCGGTGGTATCATCCGATCATATAGTGATTTTGCCCTTCCG
CTAGCAATGCATCCCGCTCCTTTCGCTGCACGGCTTCGTCCATCACCTCA
GCAAACTCCCGACGCGATTCCTTGGCTAGCAATGCGGACGTCATATCCTC
TGTATCCTCGTATTCCCCGCGTATGGTAAAGACTTCCACAGATCAGTCGT
ATGAGTCACCCAGGCTACAAAGGGCCGGCGCTTCCGTGTCGATGGCCATA
CATTTCTATGCTCAATGATACTGGGACTGCGACAACCAATGATATTGGGA
CTACGAAAAGCACGCGTAATTGTGTCGCAAGACGGTCGGTGGCATGCGCA
GGACACGGGGTAGCCCTGTCCGACGATGAGTGCACATATACTGTTATACA
TGTGGTGAGTACATACTACCTACTGTATGTAGAGTAGTACGTCGATATAT
ATATATATACTCCGTCATCGATGGCGTGTGGTCAATGATCTTCGGACTAT
GGCAAGCACAACGTGAGTACATATGCATATAGTCTGAAGTACTGTACAGT
AACGGCGCTGCTTGCCGTAGCCCAGAGAGCGCTGGACGTGCTGAGCCGTC
TATTGCGGCATCCCCTGTTTTCCAAGACCTGCTGCTCGGTTGCACATACT
AGCGTGTACCTCCCCAAGTCTAAACCTTGCAGATCTTGGGTTGTTGGCCA
TGCACAGCAAGCCGACAGGACATTACCCAGACACAGTTGTACCTGCATAT
TTGTGCTCTCGCGCCTTTGCTATCCCCGCAGTCCTCTGGCTGCCCCCCCA
CTCTCTGTGGCCTCTCTCTCAGTCCTCTCACACCTTTCGCTTCCGTTTGT
TCGCTGTGCTGTATATAGGTGCCTCTGCCTGCGCTTGCGGTGGATGACCT
TTCTGCCCTTCTGAAGGTGGGGCAGGAGGACAACGACCCCCACCTGAGCC
TCGCGCTGGCCAACATGGAGCAGGTGGGCGCTTGGTTCGGCTTGCCTGCT
GTCACTGTCGTTGTTGCCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTATTGTTATTGTTGCTGTTT
GTGGTTGTGCGGTGGTGTCGGCGACGGCCGCGGCGGCGATGCTTGCGGTG
CCGGTGTCATTGGTGGCGTGTTGTTGTGGCTGCTGCTGTTGTTGTTGTTG
CTGCTGCTGCTGGCTGTTGTGGTGGTTGGTGGTGGTGGCGATGATGATTG
CGGGTGTTTTGCTGTGAGTGACACGGTTTATACACCGAGGACGCAATGCA
CATGAATCACGAGCACATACATGGAGGTACCTACATACGAGTGCGTGCCG
GAAGTGCAATTACTTGTACTTTGTGTTGCTGAAAGTACTGCGAAGCGTGT
TGTGCTACTGTACTGTGTGTACCCATGTTACAGAGTAATGCTTGCTGTCG
CCCAGAGGTTGCCCTTTTGGCCCGGAGCAGCGGGGTGGTGGGCACTCGCT
CGCTCTCGCGTCCCCACGCGCGCAGATGCCTCACAACCGTTGCCAACAGG
CGTTTCTCATATTGTCCCGCCCCTGGCTCAAAGACGCTGGAAGTACTGCT
GTCCTGCCCTGTACTGTACACACGTACTAACGTTGTGCTTGCCGTAGTCC
CGAGACCATTGACCAAGCGCCGTTGACGACGGAGCATTTTCCCTCCCGCC
CCCGGCAAGCCACGGTGGGAGGGAGGGACCACCCCCCCGCGCATGGCGGG
GGAGTGGTTGGGTCCATACCCCTGTCCTGTACGGTACTATACACACTTCC
AAGCACTTGCGAACAGTACCCAGAGTGACCGAGATGGAAACTCTTCTAGT
GCCTGCTTCGCTCCGTGGCCCGCCCGCGCTCACAGGCTGGGGAGTTGGGG
GGCTCCATGGACTCCCCTTCTGGTGCCGGTGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:6989778..6992959+

>mRNA_S-ischiensis_contig1.1011.1 ID=mRNA_S-ischiensis_contig1.1011.1|Name=mRNA_S-ischiensis_contig1.1011.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig1:6989778..6992959+ (Schizocladia ischiensis KU_0333)
GCGCCGTCGCCCCGGGCCGGGGCCGGGGCAGGCCCCAAGGGCGCGAAGAA
GGGGGGGAAGCAGAAGGACCGGGAACGGGAGCTAAAGACGGGGCAGGCTC
GGAAGCGGCCGCAGGATTCGTCGGGCCTGGAGCACCGGCCGCGGAGCCAC
CACAAGAAGGCGCCGTCGCCCCGGGCCGGGGCCGGGGCAGGCCCCAAGGG
CGCGAAGAAGGGGGGGAAGCAGAAGGACCGGGAACGGGAGCTAAAGACGG
GGCAGGCTCGGAAGCGGCCGCAGGATTCGTCGGGCCTGGAGCACCGGCCG
CGGAGCCACCACAAGAAGGTGCCTCTGCCTGCGCTTGCGGTGGATGACCT
TTCTGCCCTTCTGAAGGTGGGGCAGGAGGACAACGACCCCCACCTGAGCC
TCGCGCTGGCCAACATGGAGCAGGTGCCTCTGCCTGCGCTTGCGGTGGAT
GACCTTTCTGCCCTTCTGAAGGTGGGGCAGGAGGACAACGACCCCCACCT
GAGCCTCGCGCTGGCCAACATGGAGCAGGCTGGGGAGTTGGGGGGCTCCA
TGGACTCCCCTTCTGGTGCCGGTGCTGGGGAGTTGGGGGGCTCCATGGAC
TCCCCTTCTGGTGCCGGT
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