mRNA_S-ischiensis_contig1.1006.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1006.1
Unique NamemRNA_S-ischiensis_contig1.1006.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A7S4HSF7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSF7_9EUKA)

HSP 1 Score: 162 bits (409), Expect = 3.210e-38
Identity = 94/269 (34.94%), Postives = 154/269 (57.25%), Query Frame = 1 
Query:  421 DWEAVSNKMALRGVRWPAVACRLRWINKVDPA-VNGTGT---WAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            DWE +S +         AV C+L+W+N   P+ ++G      W +AE  +L + A++ +  +W  IA+ALGT R A QC   YQ++++ ++V +G WT +ED++L  A++++G K+W +VA  +  R+  Q   RW K  +                K+G W+ EE++ L LA++A G K         W +V   VPGR D+QCRE+ +++L+   + GPWTEEE+  L+ AV  HG G+W+++A+ +   RT  +C RR + L +EE
Sbjct:  235 DWENISKQFVPSR---SAVDCQLQWLNNDLPSFISGQPANRGWTKAEDKRLLDLAKQYKNHEWEQIAKALGTNRTAFQCFSRYQRSLNTAIV-KGKWTPQEDERLKDAIQQYGDKNWQQVAHYLNGRTGQQCLHRWQKTLKPN-------------IKRGRWTPEEDKALTLAVKAYGSK--------SWVKVQQHVPGRTDVQCRERWVNILNPNLNVGPWTEEENKKLEEAVAIHGLGKWSQVAQVLAP-RTDNQCWRRWKALHQEE 477
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A2R6WSL1_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WSL1_MARPO)

HSP 1 Score: 162 bits (411), Expect = 1.120e-37
Identity = 121/332 (36.45%), Postives = 168/332 (50.60%), Query Frame = 1 
Query:  313 TRKWKAKEDQALREVVAAVRQG----------SAGANGDAAA--AAETDWEAVSNKM--------ALRGVRWPAVA-----------CRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            +R+W+A+E   LRE+   V+Q            A +NGD     A E    A+ NK         A+  V W  VA           CR RW+N  DP +N + +W + E  KL   A+R +  +W  IA+ LGT R   +CL  YQ++++ S++ R  WT EED KL AAVE+ G  DW+ VAA +  R+  Q   RW KV                 +KKG WSVEE++RL  A+  +G +         W ++A  VPGR DIQCRE+  +VL+       WTEEED  L+ +V  HG  RW+ IA  + + RT  +C RR + L  EE
Sbjct:  336 SRRWRAEE---LRELAKGVKQQIYEVLVCEAMDAISNGDIIGDNALENSLSAIRNKELTPEEMRNAIADVNWNEVARVYVVNRTPEECRTRWLNHEDPLINKS-SWTKTEDKKLLSIAQRNKTTNWEKIAQELGTNRTPAECLTRYQRSLNASIM-RSVWTPEEDAKLRAAVEELGESDWSLVAACLEGRNNSQCLMRWYKVLHPRK------------QKKGRWSVEEDKRLNWAVSLHGAR--------KWKQIANHVPGRTDIQCRERWCNVLNPDIKLDTWTEEEDQTLRESVALHGPHRWSAIATDL-KVRTDKQCWRRWKILFPEE 641
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A1J3HR17_NOCCA (Myb-like protein L n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3HR17_NOCCA)

HSP 1 Score: 154 bits (390), Expect = 3.970e-36
Identity = 92/248 (37.10%), Postives = 132/248 (53.23%), Query Frame = 1 
Query:  472 AVACRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            A  C  RW++  DP +N    W   E   LR   E +   DW+DIA +LGT R   QCL  YQ++++  ++ R  WT EEDD+L AAV+ +G KDW  VA  +  R+  Q   RW K                  +K G WS EE++R+ +A+   G K         W ++A FVPGR  +QCRE+ ++ L  + + G WT+EED  L+ A+ EHG   W+K+A  +   RT ++CRRR   L  E+
Sbjct:  168 AAECEARWMSSEDPLINHC-PWTAEEDNNLRLIIEEKGFTDWLDIAVSLGTNRTPFQCLARYQRSLNADVL-RKEWTAEEDDQLRAAVDLYGEKDWQSVANALEGRTGTQCSNRWKKTLHPTR------------QKVGKWSSEEDKRVKVAVTLFGAK--------SWHKIAQFVPGRTQVQCRERWVNSLDPKVNRGKWTKEEDAKLREAITEHGYSSWSKVATDLSC-RTDSQCRRRWMSLYPEQ 392
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A6D2K413_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K413_9BRAS)

HSP 1 Score: 156 bits (395), Expect = 5.790e-36
Identity = 92/245 (37.55%), Postives = 133/245 (54.29%), Query Frame = 1 
Query:  481 CRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            C  RW++  DP +N    W   E   LR   E +   DW+DIA +LGT R   QCL  YQ++++  ++ R  WTKEEDD+L AAV+ +G KDW  VA  +  R+  Q   RW K                  +K G WS EE++R+ +A+   G K         W ++A FVPGR  +QCRE+ ++ L  + + G WT+EED  L+ A++EHG   W+K+A  +   RT ++CRRR   L  E+
Sbjct:  429 CEARWMSSEDPLINHC-PWTAEEDNNLRLIIEEKGFTDWLDIAVSLGTNRTPFQCLARYQRSLNADVL-RKEWTKEEDDQLRAAVDFYGEKDWQSVANALEGRTGTQCSNRWKKTLHPTR------------QKVGKWSSEEDKRVKVAVTLFGAK--------SWHKIAQFVPGRTQVQCRERWVNSLDPRVNRGKWTKEEDAKLREAIKEHGYSSWSKVASDLSC-RTDSQCRRRWMSLYPEQ 650
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A176W4H3_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176W4H3_MARPO)

HSP 1 Score: 157 bits (397), Expect = 7.710e-36
Identity = 119/321 (37.07%), Postives = 167/321 (52.02%), Query Frame = 1 
Query:  313 TRKWKAKEDQALREVVAAVRQG----------SAGANGDAAA--AAETDWEAVSNKM--------ALRGVRWPAVACRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            +R+W+A+E   LRE+   V+Q            A +NGD     A E    A+ NK         A+  V W  VA R+ W+N  DP +N + +W + E  KL   A+R +  +W  IA+ LGT R   +CL  YQ++++ S++ R  WT EED KL AAVE+ G  DW+ VAA +  R+  Q   RW KV                 +KKG WSVEE++RL  A+  +G +         W ++A  VPGR DIQCRE+  +VL+       WTEEED  L+ +V  HG  RW+ IA  + + RT  +C RR + L  EE
Sbjct:  333 SRRWRAEE---LRELAKGVKQQIYEVLVCEAMDAISNGDIIGDNALENSLSAIRNKELTPEEMRNAIADVNWNEVA-RV-WLNHEDPLINKS-SWTKTEDKKLLSIAQRNKTTNWEKIAQELGTNRTPAECLTRYQRSLNASIM-RSVWTPEEDAKLRAAVEELGESDWSLVAACLEGRNNSQCLMRWYKVLHPRK------------QKKGRWSVEEDKRLNWAVSLHGAR--------KWKQIANHVPGRTDIQCRERWCNVLNPDIKLDTWTEEEDQTLRESVALHGPHRWSAIATDL-KVRTDKQCWRRWKILFPEE 625
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A3S3ME99_9MAGN (SANT/Myb domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3ME99_9MAGN)

HSP 1 Score: 155 bits (392), Expect = 2.280e-35
Identity = 91/263 (34.60%), Postives = 137/263 (52.09%), Query Frame = 1 
Query:  415 ETDWEAVSNKMALRGVRWPAVACRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKL 1203
            + DWE +++   +         C  RW+N  DP +N   +W   E   L    ++R   +W++IA ++G GR   QCL  YQ++++  ++ R  WT EED +L A VE  G  DW  VA  +  R+  Q   RW K                  ++ G W+V+E++RL +++   G KL        W ++A F+PGR  +QCRE+  + L    + GPW+EEED  LK  + EHG   W+KIA CV  GRT ++CRRR + L
Sbjct:  388 QVDWERLASMYVMGR---SGAECETRWLNHEDPLINHN-SWTNLEDKNLLFIVQQRGIYNWIEIATSMGKGRTPFQCLSRYQRSLNAYILKRD-WTVEEDAQLCAVVETLGEHDWQGVATALGGRTGSQCSNRWRKTLHPSR------------QRVGRWAVDEDKRLKISVMLFGPKL--------WNKIAKFIPGRTQVQCRERWFNTLDPSLNLGPWSEEEDAKLKAKITEHGYC-WSKIAACVP-GRTDSQCRRRWKIL 623
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: UPI0009F68DE0 (uncharacterized protein LOC110103393 isoform X10 n=3 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F68DE0)

HSP 1 Score: 154 bits (390), Expect = 2.470e-35
Identity = 89/246 (36.18%), Postives = 128/246 (52.03%), Query Frame = 1 
Query:  478 ACRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            +C  RW+N  DP +N    W   E  KL    + R   +W+D+A  LGT R   QCL  YQ++++  ++NR  WT+EED KL  AVE  G   W  VA+ +  R+ +Q   RW                    ++ G WSV+E++RL +++   G K        +W ++A F+PGR   QCRE+ L+ L    +   WTEEED     A+ EHG  RW+K+A C+  GRT  +CRRR + L   E
Sbjct:  455 SCESRWLNHEDPMIN-CNPWTSLEDKKLLFTVQDRGLYNWIDMASTLGTNRTPFQCLARYQRSLNPHILNR-EWTREEDSKLCTAVETFGDNSWQIVASHLDGRTSNQCSVRWRNT------------LLPERKRVGRWSVDEDKRLKVSVILFGAK--------NWKKIAQFIPGRTQSQCRERWLNCLDPSLNLERWTEEEDAKFLAAIAEHGH-RWSKVAACIP-GRTDNQCRRRWKVLLPHE 676
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A2I0W7F5_9ASPA (Myb-related protein 3R-1 n=8 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W7F5_9ASPA)

HSP 1 Score: 154 bits (390), Expect = 3.400e-35
Identity = 89/246 (36.18%), Postives = 128/246 (52.03%), Query Frame = 1 
Query:  478 ACRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            +C  RW+N  DP +N    W   E  KL    + R   +W+D+A  LGT R   QCL  YQ++++  ++NR  WT+EED KL  AVE  G   W  VA+ +  R+ +Q   RW                    ++ G WSV+E++RL +++   G K        +W ++A F+PGR   QCRE+ L+ L    +   WTEEED     A+ EHG  RW+K+A C+  GRT  +CRRR + L   E
Sbjct:  455 SCESRWLNHEDPMIN-CNPWTSLEDKKLLFTVQDRGLYNWIDMASTLGTNRTPFQCLARYQRSLNPHILNR-EWTREEDSKLCTAVETFGDNSWQIVASHLDGRTSNQCSVRWRNT------------LLPERKRVGRWSVDEDKRLKVSVILFGAK--------NWKKIAQFIPGRTQSQCRERWLNCLDPSLNLERWTEEEDAKFLAAIAEHGH-RWSKVAACIP-GRTDNQCRRRWKVLLPHE 676
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: A0A6I9RV98_ELAGV (uncharacterized protein LOC105053113 isoform X1 n=2 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9RV98_ELAGV)

HSP 1 Score: 153 bits (387), Expect = 5.970e-35
Identity = 93/245 (37.96%), Postives = 133/245 (54.29%), Query Frame = 1 
Query:  481 CRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREE 1215
            C  RW+N  DP +N    W   E  KL    + R   +W+DI+ ALG+ R   QCL  YQ++++  ++N+  WT++ED KL AAVE  G  +W  VA+ +  R+  Q   RW K       + D+       RK G WSV+E++RL +A+   G K        +W ++A F PGR  +QCRE+ L+ L    +   WTEEED  L  A+ EHG   W+K+A CV   RT ++CRRR + L   E
Sbjct:  376 CEARWLNCEDPMINHN-PWTILEDKKLLFIVQERGVYNWIDISIALGSNRTPFQCLARYQRSLNPHILNKD-WTEDEDAKLCAAVESFGDNNWQLVASNLEGRTGAQCSNRWRKSL-----NPDR-------RKVGRWSVDEDKRLKVAVMLFGAK--------NWNKIAQFAPGRTQVQCRERWLNCLDPSLNLKAWTEEEDAKLLAAIAEHGYC-WSKVATCVPP-RTDSQCRRRWKVLLPHE 596
[Close]
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Match: UPI00125E217D (uncharacterized protein LOC116022659 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125E217D)

HSP 1 Score: 153 bits (387), Expect = 8.470e-35
Identity = 91/248 (36.69%), Postives = 132/248 (53.23%), Query Frame = 1 
Query:  463 RWPAVACRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALGTGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVAAEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKK-GLWSVEEERRLFLALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGPWTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKL 1203
            R     C+ RW+N  DP +N    W+  +   L    +++   +W+DIA  LGT R   QCL  YQ++++ S++ R  WT+EED+KL AAVE  G  +W  VAA +  R+  Q   RW K                  RK+ G W+ +E++RL +A+   G K         W ++A +VPGR  +QCRE+  + L    +   WTEEED  L+ A+QEHG   W+K+A CV   RT  +CRRR + L
Sbjct:  389 RHSGAECQTRWLNWEDPLINQE-PWSVVQDKNLLHIVQQKGLSNWIDIALCLGTNRTPFQCLARYQRSLNASIIKR-EWTEEEDNKLRAAVEVFGESNWQVVAASLEGRTGTQCSNRWIKT-------------LHPARKRVGKWTADEDKRLKVAVMLFGPKT--------WRKIAQYVPGRTQVQCRERWANSLDPSLNLNGWTEEEDMKLEAAIQEHGYS-WSKVAACVAP-RTDNQCRRRWKAL 611
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HSF7_9EUKA3.210e-3834.94Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2R6WSL1_MARPO1.120e-3736.45Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A1J3HR17_NOCCA3.970e-3637.10Myb-like protein L n=3 Tax=Noccaea caerulescens Ta... [more]
A0A6D2K413_9BRAS5.790e-3637.55Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A176W4H3_MARPO7.710e-3637.07Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A3S3ME99_9MAGN2.280e-3534.60SANT/Myb domain-containing protein n=1 Tax=Cinnamo... [more]
UPI0009F68DE02.470e-3536.18uncharacterized protein LOC110103393 isoform X10 n... [more]
A0A2I0W7F5_9ASPA3.400e-3536.18Myb-related protein 3R-1 n=8 Tax=Dendrobium catena... [more]
A0A6I9RV98_ELAGV5.970e-3537.96uncharacterized protein LOC105053113 isoform X1 n=... [more]
UPI00125E217D8.470e-3536.69uncharacterized protein LOC116022659 n=3 Tax=Ipomo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6957859..6967276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score161.8
Seed ortholog evalue6.8e-37
Seed eggNOG ortholog59689.fgenesh2_kg.3__2002__AT3G18100.1
KEGG koko:K09422
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030154,GO:0031323,GO:0031326,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044085,GO:0044212,GO:0044424,GO:0044464,GO:0048285,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051225,GO:0051252,GO:0060255,GO:0065007,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0097159,GO:0140014,GO:0140110,GO:1901363,GO:1902850,GO:1903047,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGs37PM5@33090,3GBGT@35493,3HQ4M@3699,COG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons6
Model size2223
Cds size1212
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1006.1prot_S-ischiensis_contig1.1006.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6957880..6964880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.3810434-UTR-S-ischiensis_contig1:6957858..69578791622815475.3810434-UTR-S-ischiensis_contig1:6957858..6957879Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6957859..6957879 +
1695739723.0815084-UTR-S-ischiensis_contig1:6957858..69578791695739723.0815084-UTR-S-ischiensis_contig1:6957858..6957879Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6957859..6957879 +
1622815475.4568164-UTR-S-ischiensis_contig1:6964880..69648961622815475.4568164-UTR-S-ischiensis_contig1:6964880..6964896Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6964881..6964896 +
1695739723.1496732-UTR-S-ischiensis_contig1:6964880..69648961695739723.1496732-UTR-S-ischiensis_contig1:6964880..6964896Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6964881..6964896 +
1622815475.470323-UTR-S-ischiensis_contig1:6966302..69672761622815475.470323-UTR-S-ischiensis_contig1:6966302..6967276Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6966303..6967276 +
1695739723.1578393-UTR-S-ischiensis_contig1:6966302..69672761695739723.1578393-UTR-S-ischiensis_contig1:6966302..6967276Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6966303..6967276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.3940213-CDS-S-ischiensis_contig1:6957879..69582001622815475.3940213-CDS-S-ischiensis_contig1:6957879..6958200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6957880..6958200 +
1695739723.1025066-CDS-S-ischiensis_contig1:6957879..69582001695739723.1025066-CDS-S-ischiensis_contig1:6957879..6958200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6957880..6958200 +
1622815475.4099789-CDS-S-ischiensis_contig1:6959446..69596891622815475.4099789-CDS-S-ischiensis_contig1:6959446..6959689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6959447..6959689 +
1695739723.1132956-CDS-S-ischiensis_contig1:6959446..69596891695739723.1132956-CDS-S-ischiensis_contig1:6959446..6959689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6959447..6959689 +
1622815475.4209545-CDS-S-ischiensis_contig1:6961384..69615371622815475.4209545-CDS-S-ischiensis_contig1:6961384..6961537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6961385..6961537 +
1695739723.124725-CDS-S-ischiensis_contig1:6961384..69615371695739723.124725-CDS-S-ischiensis_contig1:6961384..6961537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6961385..6961537 +
1622815475.4325597-CDS-S-ischiensis_contig1:6963406..69637731622815475.4325597-CDS-S-ischiensis_contig1:6963406..6963773Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6963407..6963773 +
1695739723.1330762-CDS-S-ischiensis_contig1:6963406..69637731695739723.1330762-CDS-S-ischiensis_contig1:6963406..6963773Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6963407..6963773 +
1622815475.4444268-CDS-S-ischiensis_contig1:6964752..69648801622815475.4444268-CDS-S-ischiensis_contig1:6964752..6964880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6964753..6964880 +
1695739723.1414497-CDS-S-ischiensis_contig1:6964752..69648801695739723.1414497-CDS-S-ischiensis_contig1:6964752..6964880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6964753..6964880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1006.1

>prot_S-ischiensis_contig1.1006.1 ID=prot_S-ischiensis_contig1.1006.1|Name=mRNA_S-ischiensis_contig1.1006.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=404bp
MIVPEATQRALDLNLQLQADIMEEIRQVDEAVRTNRAKRAEAVENVLTRT
VRVQPKKRKVYGAQPLDCEDPVCTFFRMNESVDLKARTSLAKERELETRK
WKAKEDQALREVVAAVRQGSAGANGDAAAAAETDWEAVSNKMALRGVRWP
AVACRLRWINKVDPAVNGTGTWAEAEVAKLREEAERRQECDWVDIARALG
TGRPAIQCLKYYQQNVSQSLVNRGAWTKEEDDKLFAAVEKHGLKDWARVA
AEVRNRSQHQARARWAKVGRTGGGDKDKAADFGGGRKKGLWSVEEERRLF
LALRANGGKLGKRGQDLDWTRVAAFVPGRDDIQCREKCLSVLSAQRSAGP
WTEEEDGLLKGAVQEHGEGRWAKIAKCVGQGRTGAECRRRHRKLCREERE
RHA*
back to top

mRNA from alignment at S-ischiensis_contig1:6957859..6967276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1006.1 ID=mRNA_S-ischiensis_contig1.1006.1|Name=mRNA_S-ischiensis_contig1.1006.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=9418bp|location=Sequence derived from alignment at S-ischiensis_contig1:6957859..6967276+ (Schizocladia ischiensis KU_0333)
GGCTGGGGCACTGCAGCAGGCATGATCGTCCCAGAGGCCACCCAGAGAGC
TCTGGACCTGAACCTGCAGCTGCAGGCCGATATCATGGAAGAGATACGAC
AGGTCGACGAGGCCGTGCGCACCAACAGGGCCAAACGAGCCGAGGCAGTC
GAAAACGTCCTCACGAGGACGGTGAGGGTTCAACCAAAGAAACGGAAGGT
GTACGGTGCGCAGCCGCTCGATTGTGAAGACCCGGTCTGCACCTTCTTTC
GCATGAATGAGAGTGTGGATCTCAAAGCTCGTACTTCCTTGGCGAAGGAG
AGGGAGCTGGAGACGCGCAAGTGGAAAGCCAAGGAGGACCAGGTAAGCCA
AGTGACAGAGGGGGAGGGGCAGCGTGTGGGCTGTGAGGAGCATGTGTGCC
GTGTGGCTACTCTTCAGTGCCAGCAACACAACACTTGAGGGCCTTACCTT
ACAAAGAACAAGCTGTGCGAACACTGTGTCCCACAGTCCGAGGAACATGA
CGGGGACATTGTTGGCGGCCCACCTGTCCATTGGCCCGGGCAGGGTGGCT
GTGTATTGGGTTTGATTGCCGAGAATAAGCTTGCACGAAGTGCAAAATAG
TGTCCGTGCGCTGTGGTGCCTCTACCGTACTGGACGGTGTATCAGGAGCC
CCCTGAATTTCGACCCCCTTTTGGTAATTTCAGGGCCCAAAAATATAACA
GGGGGGACTTAGTATAGGGAACCCCCTTGAGCCTCGGGGGTCCAAGTGGC
AGTACTGACCCTCAGCTTCAACAAGGCTGCCGTCATGCCAGCATTGATGT
GAGATTGGGTAGTAATTTCTACAGTAAGTGGGCTGCCCTTGTGCCTACCC
AACGAAGGTCGGGGAGCGCAATTTGAGCTATTTCTTTTACGGGTTCTTCT
TGTCGGGGTGTGGCGTGCCGCAGCCCTGGAGCTGGCTCTCGCTCACAAGC
CCCGGACCTCGTCTCCGTCCGCATCGAACCACGCCTCCGAACGGGCAGCA
TGGGCATCCACAACACTGCATTTTGCCATCCATGGTGCTGTCGTCATGTG
CGGCTTCGCGGGGTGCACCCTCCGAGCACCTCAACAGCGCACCCTGCTCA
TCCCCCGTTACGCTCGGATATTATCGAACCCCTTATATCGAACCCCCCAC
AAATATCGACCCCCGACGATATCATGTGAGTATGAACTATCGCCCCCGGT
CGGCCGGGTAGTTATCGGAACTCTGTACAAGATCCCCCTTGAATACCGGC
CCCCCTTCGGTAACTGGGCCCGAAAATGCATCGCAGGGGGATCCGTATAC
ACCGTCCTTTGCGGTGTGTGTGTGTGTGTGTGTGGTCGCCTGGCACATAG
CTCGAGGATTGAAATCCGCGGCGGCCACGGGGGCCGCCAATGCATGGGAA
ATGTAGAGCTGTGAGCCGTCACGGCCGGTCAGTCAAAACGATGGCCGGCA
TCGCAGCAGTTTCGGTGCGGCCGGTTTTTGTAGCCATTGTTTTTTTGCGC
GATAAGGGCTATTTGTGGGCCGAAACCGGCGATACCTCACATGCACGCAC
GCACCACGTGCGCACACATGCACGCATGCACCACGCAGGCGTTGCGCGAG
GTGGTGGCGGCAGTGCGCCAGGGCAGCGCCGGCGCCAACGGCGACGCCGC
TGCAGCAGCAGAGACCGACTGGGAGGCGGTGAGCAATAAAATGGCCTTAC
GGGGGGTGCGGTGGCCTGCAGTGGCCTGCCGCCTACGGTGGATCAACAAG
GTGGACCCAGCAGTGAACGGCACTGGCACGTGGGCCGAGGCGGAGGTTGC
CAAGCTCAGGGAAGAAGCAGAGCGCCGTCAGGTGTGCTTGTCTCTCTCCT
CTCCCTCTCCCTTTCTTCCTTTCTTGTCTCTCTACAGTTGCATATCTCTC
CGCGTCTGTCATCTGTCTGTGTGTCTCTCTCGCACACACAAACGTATGCG
CGCCCATTTGGCCCTCCATGACACCGGCCATCCAGAGAGGGATTGCCGGC
GGTGCACCGATCCGGATGCCCCTACAACCAACTGATTGCTGGCGTCACTG
GACCGCGCCAGCGGTTTCTGAACCACCGAAGCTCTCCACAAATACTGAAA
GTGAAAGCATTTCTGTTTTTCCTTGTGCGGGTAGCCTCAGTTAGTGCCAG
TTTGCTGCGGTCATAGAACGATCCAAACACTTGAGACTTGAGAAGGTATC
AATCACCGTTCCGGGACTGTCAGTAGTCAATAGTGTAGTGTGAACTGCCA
AGTACTCACTTATAGCAGTAAGTAGTATAGTACTCGAGTAGTACCAAGTA
GTAGGGTAGTAGTAGAGTACTACAGTAGGTAGTAGTATAGCAGTCGAGCG
GTACCGGCAACACTTCAATAGTAATTGGTATAGTAGTAGCGAGTCAGTGA
CAGGGGGCGGGTGGAAATGGCCTCCCCTCCCCCCTTGGCGGAGGTGTGCG
TCCCCGCCCCTCTCACCCTCTCTGCCACGGGAGGGAGTGGGCCTTCTCTT
GATCGAGGAACGGGGGTCAATGGTCCCGGGACTACAGCAAGCACAGCGTG
AGTACATACGCACCTCAAGTATACTAGCAAGTAGCATCGTGTCAGCAGTA
GCAGTACAGTACTTACAGTATCGTAGTTCCGGCTCTCTGGACTACGGCAA
GCATGTGTACTGTACTCTAGCATGACTATATGCGGTCTCCCGCTCCCACC
CTGGCTCTGCTCAATTCGGGACTTAGCAGTACCGGTAGTAGTACAGTAGA
CAAGCACAAATCAGTACTCGTGTGTGTATGCGGTGTATGCTTCCAAGTGC
TTTAACCTATTTATCGTGTGAGTGTGTGTGTACGAGTACCGGTAGTAACG
GCAAAGCATGTAGTTCAAGTACCAGTACTCTAGCAGGAGGGCAAACCCGA
AGTTTAGCTTCACTATAGTTTGGTTAGTAGTCCTCAAACAGTTTGACCAT
ATCCATGCATAGTGCACTGTAGTTGAGAATCAATGGCTGAATAGCTACTC
CAGGAGGAGGGCAAAGCCTGTCCACTGTGCACAAACGCCTTCCGGAAGGC
AAGTCAACCAGTACTTACAAGTATAAATGTGTGTGTGTGTACTCACGCTG
TGCTTGCCATAGTCCCGAGACCATACCTTGTCCAAGTATATAATGATACT
TCCTACTACAGTAGTATTAACAGGAACAACACGGGGCGAGGTGCGGGCCA
CGTCACTCGAGACCTCAGCAGTGGCCCTTCCTCATAGCTCGCCGGGGGAA
ACTTGTGTGGGGAAGGGGAGAAGAGGAGGAGGGGGAGGTGGACGGGGATT
CATCGTAGTATTATAAGGAACAACACGAGGCGAGGTGCGGGCCACGTCAC
TAGAGACCTCAACAGTTGCCCTTCCTTAGCTCGCCAGGGAAAGTTGCGTG
GGGAAGGGGGAGGTGGACGGGGAGGAGGACTTTGAAGTGTACCCTAATTC
AGAATATGTGCGGAGCAACTCTGTAACTGTAGCTATACCGTACTTACGTG
TACCTGCCATGTAACTGCTGCCACAGGAGTGCGACTGGGTGGACATCGCC
CGCGCTCTGGGGACGGGCCGGCCCGCCATCCAGTGCCTCAAGTACTACCA
GCAGAATGTCAGCCAGAGCTTGGTCAACAGGGGCGCATGGACAAAGGAGG
AGGATGATAAGCTCTTTGCCGCCGTTGAGGTGAGAGCACCCACAGACCCT
CAAGCCGCTGTTGCTCCCGAGATGTTTGTCTCATTTGTGCCTCCAGGGGG
GGGGTGTATGTGCCCCATGTGTGTGAGTGTAGTTGTTTTCTGTACAGTAG
TTGCGTCTTCCGATGTACTTCGAAGTATACTACAGTGCCTACCAAGTACT
TCAAAGTACTTCAAAGCATGTAGCCGGGTGGTGCATTGCCGACAGCCCGG
AGACCGCCCGTCGGTAGTACTTCGAAGTACTTCCAAGTGGTACGGGTGCT
GTACATTGTAGTACATGTCACTGTAAATGTACAGTAGTACATACTGTACG
TGCTGTACGGTGCGCTACAGTAGGTCGTGGTACTAGTGCGACGCAGTGCG
TGCAGTGCAGTGCACGCTTAGGGCACACGCTGTACTCTACTACAGTAAAG
CACACAGTACGCAGTACTTGTAAGCACCACGGTACTAGTAGTAGTGTATA
GTAGTAGTAGTACTATAGTAAAGTAGTAGTACTACTACTACACTCCCAAG
TAGTAGCAGTACTACTACTACTTTGAAGTACTACTACTCAGGACTACTAC
TACATAGTGGAACGGTCGTCACCGCTTTAAGTCAACACCCGAAGTCAACA
TCCCCGCCGTGTACCCATGTGTTGACTTAACCCGGGGACACAGACGGGTT
TGTTGACTTGTCCCGGAGACGATGACTAGTTTTCCTACTTCGAAGTACTT
TAGAACTCCCACGCACGGCGCCAGATTGGGGAATAGGACTCGACTCGGCG
AGGGCTGGAGGAGCTGACTGATCGTTTTTGCCATGCTGCGAACCAAAGTG
CACCAGTACTGGATGCAGTGAGCACTCGCTGGCATCTGCTGGCCGTGTTT
GACCTTCAAACCAGAGCGATGGCATAGATATGGCTGGCCGCCCAGGCTCA
CGGGGTAATTCTGATCCCCAGCCAGAGGTGGAATTTTTATCGTAAAGGGG
CCTGCTGTGCGCACTGGCGTGTTCTCTGGGTCGAGCGGAGTCCATTGCAC
TATACTGGGGCAGGTAGCTCCCTGAAATGGACAAGAAATCGCCTGATAAA
GCTAAGTCAACACTACTTCGAAGTAGCTAACCGTGACAAAGTGTGACTGT
GTTGACTTGTGCCGGGGATGAGTTCGTTGCTGTAGTACTTCGAAATAGCA
CTGTACAGTACAGTGCCCCCGGAAGTATTGTACTTCAGTAGTATATTGTC
CGGCGACCTAGCGGTCGGGATCAAATCATCCTGATTGTTCCTCCCCTCAC
CGTTACTAGTAGGGTGCCGGTGCGCCCAAGAGCAACTCTGCGAAGAGACT
CACAAACCCTCGCCGACGGCTACGCTTTGTTGTAGTCTAGCGAGCGGCCC
CTCAGCCGGCTTGCTGACGCCAAGGCATCGTGTCATTCCGGGCTTGGCCA
GTGCACGGCCTGGTTGGTGCAAACCCGACATGCTCCATCCCGGCCTAGTT
GGGACTCGAGAGTCCATGGCTAAATAGCTACTCCGGTCGGAGCGCACACC
CCAAGCTTCGACCTACTTAGGGCTGTCGGCAATGCATGCGAGGTTATGCC
ACAAGACAAACCAATGAGTACAGATTAAAAGCACTACGGAGTCTATATTT
TGAGGCGCCGTACACAACACATCTCTGACCGATACATCATATTTCGGCCT
TCCCGAACGAGCAAGCCCACCCCACCCCGGGGGGCACACATGCCCCCGCC
CCGTGCCGCGATAGTGAACCGACTGGATGCCCCCGGCGACCTACAACAGA
GCGCCGTAACTCTACCCCCATCCCGAGCCCACCCGGCGACTCCATTTACC
CCCATTGCCACGACTTTGCGACCCCCAATCACATCACACGGCCGGCAGAA
GCACGGCCTGAAGGACTGGGCGCGCGTCGCCGCAGAGGTGCGCAACCGTT
CCCAGCACCAGGCCCGGGCACGCTGGGCCAAGGTCGGCCGGACGGGCGGC
GGGGACAAGGACAAGGCCGCGGATTTTGGTGGTGGCCGCAAGAAGGGCCT
CTGGAGCGTGGAGGAGGAGCGGCGCTTGTTTCTGGCACTGCGGGCCAACG
GCGGCAAGCTGGGCAAGCGGGGGCAGGATTTGGACTGGACCCGCGTGGCG
GCGTTTGTGCCGGGCCGGGACGACATCCAGTGCCGGGAGAAGTGCCTGAG
CGTGCTGAGCGCGCAGAGGAGCGCAGGGCCGTGGACGGAGGAGGAGGACG
GGCTCCTCAAAGGTGGTGAGCGATGGAGAATGAGTCTGGTCGAAGTACCT
CGTCTCATGGTAAAATGCTGGGCATTAGCACCGTTGGAGAGGGCGGTGAG
GTCTGGTGCCTGTGCTGGCTATGGCTGAAATAGCAGAAATACCTAAGGTG
TAATGAGGGGAGCTAGAGATATCTCCTGGACTGAGAGTGCTGCAAGGGGC
TGTAAGGAGTCTTGTATAGGGGCCAAGAGGCCATGTGTGTCGTTTTAAGC
ATCATGGATACACATGTTCTGACCAGTCTGAGAGTGAGTTGAGTGTGTGA
CTGTGAGTGTGTGTGTGTGAGAGAGAGGTAGAGTGAGTGATAATGGGTGG
ATGAGGGAGTGAGTAGAGTCGGTGAGTGAATGAGTGAGAGATGTGCCAGG
TGGGCGGGGCATGAGAGAGAGAGGGAGCGGAGGGAGGGGAGAACGGCGTC
TGCATCAGGGTTTAGGCGCCTTTTACGGTATTATACAATATGGCTGATAG
GTTGCCGGGCGCTCACGGAAGAAATGGGCCACGGCCAGTGGGCTGCCAAA
TCCAAAGCCCATTTGCCGGCCGGCTGCGTCAACCACAGCAACATAGTACT
CTACTGCTTTGGTGAGTCCTGGGCAAGTGTTTGAAAGTTGTAAGTTTTAA
GGGGCTGGTTGGGTGACAACTGGTACCAGCGGTGTGTGTGTGTGTGTGTG
TGTGTGTGCGCGCGCGCGTGCGCGTGCGTGTGCGAGTGCGAGCGCTTGCG
CTTGCTTCGTGCTCATGCATATATATACTCTAGAAGTACTACTGTACAGT
ACTCTGCTTCGATATGTATGTACTCGTATCCTATGTACAGCACTCACGCT
GTTTACTGACGCTGTGCTTGCCGTAGTCCCGAGACCATTTACCCCACGCC
TCGACCGAGACATACTATCACACAGAAGTGACCTCTTCTTCCTTTCTGCC
CGCCACCTGCTGGAACTGTCATGGCTGAAATATACGCCTTGCAGCTGTAC
AGGAGCACGGGGAGGGCAGGTGGGCCAAGATTGCCAAGTGTGTGGGGCAG
GGTCGCACGGGCGCCGAGTGCCGGCGCAGGCACAGGAAGCTATGTCGAGA
GGAAAGGGAGCGGCACGCTTAGACGAGCGGCATCGGAGGTGGGTGGCCAT
GGTGGTGGACTGGACCTGGAGGTTGACTGGCCTGGTAACCCTTTTACCGG
TGTCCTAGCTCTATACCAATGCGAGAACACTCAATCTCACACGCGTGCGA
TTCTACCTCGTTGCAATTTATACTAATCAAATCAAAGTACCTTGGTACGA
GTACAATACACTTGTACGTAGGGAGGTGTGCCGCACGTGCGAGCGTGACT
CACTGCACTGTTGTACAGTAGAGCGTACATGCACTTCCAAGCTTTCAGGT
GGCGAGTAGTAGTTTGCAAGTATCTCTGGTAGACTCTGTAGTGCTGCTGC
CCGGGTTGTTCGTGTTAATACTGCCCAGGGCAGAGCAAGCGCAGTTGGTG
ACTTGCAAGTCTTCCTCGAGGGGAGCAATGGAGAGAGGTCAGTGGAGTTG
TTCGCCAGCAGCTCGCACGGGGGCTTTGCGCCGCCGTGGAAACCCACCCG
CCGTGCTGTAACGCACGCGGCGCCCTACAGCTTATGCCGTGCAGACGGGG
AAGAGAATCATGCCGGGTAACACAAAGAGGCTAAGCGTGTGCGTGCGCGA
GATGGCGTGGTGGAGGTCGCGGAGTCGCAAGGCGGTCCAACAAGCATAGG
TGCGGGGCGCGCGGCCCGGCGCTCTGACAAGGCATTCAACAAAAAGAAAA
ACGCTTGGGCAAGAGTTAAGCAAAAGCCTGTTCCGGGCTAGCCTTGTCAT
TCAGTTTCTGAACAGGACCCAATAGTTGTCACGGCAATGGATCAACGCCT
CGTTGTCTGGTTGGGTGACACGGGGCTCTTATCGTGCCGCGTGGCCGTTT
GTCAACACGGCCGTGGCACCTTGGCCTTGCCCACCCCAGGTGGCCTGTTC
CCGGCCACTCGGGAGCGAAGGTGGGGCCATGAGGTACCCGGGAGGCGGGC
CGCTTGGCCGAAAACGGTGCCGCCCTACCGTAGACCGTCGACAGGGGGCA
GCCTATCGACGCCCTTATACCAGCCGGAGCAAGCCGAGCTGGGCGGACCC
GTTTGAAAAGAATGAGGCCTCCCCCGAAGCCTTCTTGTGCAGTATGTTGG
CCGAAAGGGGGTATCCGACGGCCAAGTTGTCCTCTCTGGGCGCAGGCTAT
ATGCGAGCACCCACGGCGAAGCAGCTGACGGACTACGCGAGCAACCTGAG
CGGACTCATCCGCAGCGGGGACTTGGCCGGGCTCCAGAAGGCCGTCCAAA
GTGGACGGAAGATGGACGCTTGCAACAAAGTGAGAGCGAGGAAAGCTTTT
AATATGGCCCACGTCGCTCGGCGTTGGACGCTTGACGCGGAGAACAGCCG
GTATCTTTTGGAACACAGCTCCACTAGTTGGTTGGATGAGCAGCGGAAGT
TAACCTTTGCCCTTCCCCCTTGTTCCCCCTTGGTGTGCGCGCAGTTCGGG
GAGTCTGTCGTGCACTTGGCGTGCCGGAAGGGCGACCCGGAGCTGCTCCG
ATTCCTGCTGCAGAACGGGGGCTCCCTCATGTGCTCGGACGACCTCGGCC
GCCTGCCCCTGCACGACGTGCTGTGGGCGTCCCGCCCGCGGTTTGAGCTC
TTGCTGCTCCACCTGAACAAGCGGCCGGAGCTCCTGCTCACCGCGGACAA
CCGCGGGTGCACCCCCTTGCGCTACATCAAGAGACAGAACTGGGACGCCT
GGAAGGGATTCCTCGCCACCGTCAAGGACACCTACTGGCCACGTCTGCCT
GTGGCGGCGCCGACGGCGACGGCGGTAGCGGCAGCAGCCAAGGGCTGCTC
CTCGTGAGGCGCGACTTGCTTGGCCGCCTCGGCGGCCCCGTGAGCATGTC
CTCAAGGACCGTATGAAGTGCCTGCGTGGCTGGACGGGGTATGCATGTCT
CGCGGGAAAAGCGCGGGGCCAGAGACTGGCTTTCGGCGCCCGCCTCTGCG
CGCTCTCGGTGTCCGACGTTGTTTGTTGGCTGATTTTTTTGTCTGTCCTG
TCTGTCTTGTGTGGCATGTGTGGCGCGCAAACGTGCTCGAGGCTATAGAG
TACTCGTACCATGTGGGTTTTGGGCGCGCTGGAGTGCTTTGGAAGCACAG
CACAGTATGCAGCGGTGAAGTACATACACGCCTTCCGGGCTCCTTGTACA
GTACCGTACGGTAAAAATTTTGGCATGTTTATTCTTTGATGTTTTTGGGC
ACAGCGCTGGCGGCCGAATAATCGCCCGATTGTTGTGCCCCCGGTTCCTG
GCGCCCGGCCGCCTTGGCCCGGGCCCGTGGGGAAGGAAGGAAGGCCTTGC
AGTTTTGTTCCGTGGCCGACGCGCGCGTCTTTCTGGGCAGGCCGGGGCGT
CCGAGACTGGATGAGATGTTTTATTAAAAACAAAAGCGCGTACAGTCTTA
ATGCAATCGTGGTGGCTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:6957859..6967276+

>mRNA_S-ischiensis_contig1.1006.1 ID=mRNA_S-ischiensis_contig1.1006.1|Name=mRNA_S-ischiensis_contig1.1006.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2424bp|location=Sequence derived from alignment at S-ischiensis_contig1:6957859..6967276+ (Schizocladia ischiensis KU_0333)
ATGATCGTCCCAGAGGCCACCCAGAGAGCTCTGGACCTGAACCTGCAGCT
GCAGGCCGATATCATGGAAGAGATACGACAGGTCGACGAGGCCGTGCGCA
CCAACAGGGCCAAACGAGCCGAGGCAGTCGAAAACGTCCTCACGAGGACG
GTGAGGGTTCAACCAAAGAAACGGAAGGTGTACGGTGCGCAGCCGCTCGA
TTGTGAAGACCCGGTCTGCACCTTCTTTCGCATGAATGAGAGTGTGGATC
TCAAAGCTCGTACTTCCTTGGCGAAGGAGAGGGAGCTGGAGACGCGCAAG
TGGAAAGCCAAGGAGGACCAGATGATCGTCCCAGAGGCCACCCAGAGAGC
TCTGGACCTGAACCTGCAGCTGCAGGCCGATATCATGGAAGAGATACGAC
AGGTCGACGAGGCCGTGCGCACCAACAGGGCCAAACGAGCCGAGGCAGTC
GAAAACGTCCTCACGAGGACGGTGAGGGTTCAACCAAAGAAACGGAAGGT
GTACGGTGCGCAGCCGCTCGATTGTGAAGACCCGGTCTGCACCTTCTTTC
GCATGAATGAGAGTGTGGATCTCAAAGCTCGTACTTCCTTGGCGAAGGAG
AGGGAGCTGGAGACGCGCAAGTGGAAAGCCAAGGAGGACCAGGCGTTGCG
CGAGGTGGTGGCGGCAGTGCGCCAGGGCAGCGCCGGCGCCAACGGCGACG
CCGCTGCAGCAGCAGAGACCGACTGGGAGGCGGTGAGCAATAAAATGGCC
TTACGGGGGGTGCGGTGGCCTGCAGTGGCCTGCCGCCTACGGTGGATCAA
CAAGGTGGACCCAGCAGTGAACGGCACTGGCACGTGGGCCGAGGCGGAGG
TTGCCAAGCTCAGGGAAGAAGCAGAGCGCCGTCAGGCGTTGCGCGAGGTG
GTGGCGGCAGTGCGCCAGGGCAGCGCCGGCGCCAACGGCGACGCCGCTGC
AGCAGCAGAGACCGACTGGGAGGCGGTGAGCAATAAAATGGCCTTACGGG
GGGTGCGGTGGCCTGCAGTGGCCTGCCGCCTACGGTGGATCAACAAGGTG
GACCCAGCAGTGAACGGCACTGGCACGTGGGCCGAGGCGGAGGTTGCCAA
GCTCAGGGAAGAAGCAGAGCGCCGTCAGGAGTGCGACTGGGTGGACATCG
CCCGCGCTCTGGGGACGGGCCGGCCCGCCATCCAGTGCCTCAAGTACTAC
CAGCAGAATGTCAGCCAGAGCTTGGTCAACAGGGGCGCATGGACAAAGGA
GGAGGATGATAAGCTCTTTGCCGCCGTTGAGGAGTGCGACTGGGTGGACA
TCGCCCGCGCTCTGGGGACGGGCCGGCCCGCCATCCAGTGCCTCAAGTAC
TACCAGCAGAATGTCAGCCAGAGCTTGGTCAACAGGGGCGCATGGACAAA
GGAGGAGGATGATAAGCTCTTTGCCGCCGTTGAGAAGCACGGCCTGAAGG
ACTGGGCGCGCGTCGCCGCAGAGGTGCGCAACCGTTCCCAGCACCAGGCC
CGGGCACGCTGGGCCAAGGTCGGCCGGACGGGCGGCGGGGACAAGGACAA
GGCCGCGGATTTTGGTGGTGGCCGCAAGAAGGGCCTCTGGAGCGTGGAGG
AGGAGCGGCGCTTGTTTCTGGCACTGCGGGCCAACGGCGGCAAGCTGGGC
AAGCGGGGGCAGGATTTGGACTGGACCCGCGTGGCGGCGTTTGTGCCGGG
CCGGGACGACATCCAGTGCCGGGAGAAGTGCCTGAGCGTGCTGAGCGCGC
AGAGGAGCGCAGGGCCGTGGACGGAGGAGGAGGACGGGCTCCTCAAAGGT
GAAGCACGGCCTGAAGGACTGGGCGCGCGTCGCCGCAGAGGTGCGCAACC
GTTCCCAGCACCAGGCCCGGGCACGCTGGGCCAAGGTCGGCCGGACGGGC
GGCGGGGACAAGGACAAGGCCGCGGATTTTGGTGGTGGCCGCAAGAAGGG
CCTCTGGAGCGTGGAGGAGGAGCGGCGCTTGTTTCTGGCACTGCGGGCCA
ACGGCGGCAAGCTGGGCAAGCGGGGGCAGGATTTGGACTGGACCCGCGTG
GCGGCGTTTGTGCCGGGCCGGGACGACATCCAGTGCCGGGAGAAGTGCCT
GAGCGTGCTGAGCGCGCAGAGGAGCGCAGGGCCGTGGACGGAGGAGGAGG
ACGGGCTCCTCAAAGGTGCTGTACAGGAGCACGGGGAGGGCAGGTGGGCC
AAGATTGCCAAGTGTGTGGGGCAGGGTCGCACGGGCGCCGAGTGCCGGCG
CAGGCACAGGAAGCTATGTCGAGAGGAAAGGGAGCGGCACGCTTAGCTGT
ACAGGAGCACGGGGAGGGCAGGTGGGCCAAGATTGCCAAGTGTGTGGGGC
AGGGTCGCACGGGCGCCGAGTGCCGGCGCAGGCACAGGAAGCTATGTCGA
GAGGAAAGGGAGCGGCACGCTTAG
back to top