mRNA_S-ischiensis_contig1.1005.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1005.1
Unique NamemRNA_S-ischiensis_contig1.1005.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6955803..6957785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size802
Cds size801
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.1873736-CDS-S-ischiensis_contig1:6955802..69560781622815358.1873736-CDS-S-ischiensis_contig1:6955802..6956078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6955803..6956078 -
1695739658.7170632-CDS-S-ischiensis_contig1:6955802..69560781695739658.7170632-CDS-S-ischiensis_contig1:6955802..6956078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6955803..6956078 -
1622815358.2002926-CDS-S-ischiensis_contig1:6957260..69577851622815358.2002926-CDS-S-ischiensis_contig1:6957260..6957785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6957261..6957785 -
1695739658.7294326-CDS-S-ischiensis_contig1:6957260..69577851695739658.7294326-CDS-S-ischiensis_contig1:6957260..6957785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6957261..6957785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1005.1prot_S-ischiensis_contig1.1005.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6955803..6957785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1005.1

>prot_S-ischiensis_contig1.1005.1 ID=prot_S-ischiensis_contig1.1005.1|Name=mRNA_S-ischiensis_contig1.1005.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=267bp
HVSHETGGSGLSAKRRPRWAFWGRIVFSKPVVATANTPKGLRDVMLNFNL
ANGEAGEKLLLLARAASLRFNVKAGEGCEVQASSPTDRTARSLSDSAVLV
RAKRPRLEMEPAPVHNLEAGCVHLGWKACAEGHTAPSPAEAGLYEEKQHQ
HQQQQQECQQPQQQLDPALWAVIKKGECCPFDCSFAVSGLAYCKHYHCRR
GCRHRAGAEAGKPFQTNQMEKVRKHSHKHALASLHGRQPDASPGGMTGVS
PEPPLGGGAPSSRSHDD
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mRNA from alignment at S-ischiensis_contig1:6955803..6957785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1005.1 ID=mRNA_S-ischiensis_contig1.1005.1|Name=mRNA_S-ischiensis_contig1.1005.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1983bp|location=Sequence derived from alignment at S-ischiensis_contig1:6955803..6957785- (Schizocladia ischiensis KU_0333)
CACGTCTCACACGAAACGGGGGGGTCGGGGTTGTCCGCGAAGCGGCGCCC
CCGGTGGGCTTTTTGGGGACGCATTGTCTTCTCCAAGCCGGTGGTGGCGA
CAGCGAACACCCCCAAAGGGCTGCGCGACGTTATGCTCAACTTCAACTTG
GCCAACGGAGAGGCCGGAGAGAAGCTGCTTTTGCTTGCAAGAGCAGCATC
CCTACGCTTCAATGTTAAGGCAGGTGAAGGCTGCGAGGTTCAGGCATCCT
CTCCCACGGACCGGACGGCCCGGTCACTATCGGATTCCGCGGTCCTGGTG
AGAGCGAAGCGCCCCAGGTTGGAAATGGAACCGGCTCCAGTTCACAATCT
GGAAGCAGGATGCGTCCATCTAGGCTGGAAAGCTTGCGCGGAAGGTCACA
CAGCACCTTCACCTGCGGAGGCTGGCCTGTATGAGGAGAAGCAGCACCAG
CACCAACAGCAGCAGCAGGAGTGCCAGCAGCCGCAGCAACAGCTGGACCC
AGCCTTGTGGGCCGTTATCAAGAAGGTGAGAGGGGGCCGTGGGCGCGAGT
TGGGCTCCGGTGGTCGGCCCATCGTGTCCTTGCCATAGAATTGTTTTTGT
CTGTGACTCGTTCGTTTTCTTGTGTACTCCTTCATCCTGTGTGACTACAC
ACTCCTTCATCCTGCGACTACTCGCCGACGGCTACCTTTGGTGTGCAGTA
TAGCGAGCGGGCCCTCTTCCGGCTTGCCGAATCCAAGGCATAATTGCATT
CCGGGCTTGGTCAGTGCGCGGCCTGGCCGGTGCAAACCCGGCATGCTCCG
CCCCGGCCTAGTTGGTATGCGAGAGTCCATGGCTTAACAGCTACGAGTAC
TCGTGTCGAAGGGCCAACCCGATGTTTCGACTTGGGCTGTCAGCAATGCA
GCACGGTCATGTCGCAAGACAAGCCAGAGTACAGAGAGACTCCTTCGTCC
TGCTCCGTCTTGGTCGGGGCGCGGGGTCAATGGCCCCGGGACTACGGCAA
GCACAGCGTGAATACATACATACTCACTCTTGCTCGTTCCATTGCCCCGT
TCTCAGAAGAGGCGCGGGCGGGGTCAACGGTCTCGCGGCCAAGTAAGGCG
AGCACAACACATACCTCATATATATATACATGCTGCAGAAATGCTTTGTT
GATACTGGCAATGGCCCGTGCAATGCCCTGGAATTTTCAAAATTTCCGTT
TTTTGGTCCCGTAAACTGTGCACCTCTGTTGTACTTACCCACTTGCTGTA
CTGGGCGGGCAATGATGCCTGCGGAGCACAAACACACAATGCCACTCAAT
GTTCAAATGGCCGAGGCCCCCTGCGTTTCAGCCAGCCTTGCTGCATTGTC
TGGACAGAAGACGCCCGTGCTCCTATGAAAACCATGGTCAAAGCTAGAGA
CTTGTGCACCGAGTTCGTTTTCTGAGCTCACTCTACACAGACTTGAGTTT
GCTTCAGGTTGCTTTCCACCGAAGCCGGAGCAAGAAAAAAACAAGGCCAA
AAACGCGGGTGGGCTCACAGCCCCAGCACAGAAACGGAAGCCGACTAAGA
TTGCTGTTTGCGATGCCCGCACTACCTTGCCGGTGACGCCACCAATCGAT
GATCACCTCTCAACAGACCCTTGCGCTGCAGGCCCCTTCTCACCTCCCCC
ACGTCGCCCCCCTGTCTGCCCCCCGCCCCCTCCCTTCCCGGGCTCACACC
AACACAGGGAGAGTGCTGTCCTTTCGATTGCTCCTTCGCCGTGTCCGGGC
TGGCCTACTGCAAGCACTACCACTGCCGCCGGGGGTGCCGCCACCGGGCC
GGCGCCGAGGCCGGCAAGCCCTTCCAGACCAACCAGATGGAAAAGGTCCG
CAAGCACTCCCACAAGCACGCCCTCGCCTCTCTCCACGGGAGACAACCCG
ACGCCTCCCCCGGGGGGATGACGGGCGTCAGCCCGGAACCCCCCCTCGGC
GGCGGTGCCCCCAGCAGCAGAAGCCACGACGAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:6955803..6957785-

>mRNA_S-ischiensis_contig1.1005.1 ID=mRNA_S-ischiensis_contig1.1005.1|Name=mRNA_S-ischiensis_contig1.1005.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1602bp|location=Sequence derived from alignment at S-ischiensis_contig1:6955803..6957785- (Schizocladia ischiensis KU_0333)
CACGTCTCACACGAAACGGGGGGGTCGGGGTTGTCCGCGAAGCGGCGCCC
CCGGTGGGCTTTTTGGGGACGCATTGTCTTCTCCAAGCCGGTGGTGGCGA
CAGCGAACACCCCCAAAGGGCTGCGCGACGTTATGCTCAACTTCAACTTG
GCCAACGGAGAGGCCGGAGAGAAGCTGCTTTTGCTTGCAAGAGCAGCATC
CCTACGCTTCAATGTTAAGGCAGGTGAAGGCTGCGAGGTTCAGGCATCCT
CTCCCACGGACCGGACGGCCCGGTCACTATCGGATTCCGCGGTCCTGGTG
AGAGCGAAGCGCCCCAGGTTGGAAATGGAACCGGCTCCAGTTCACAATCT
GGAAGCAGGATGCGTCCATCTAGGCTGGAAAGCTTGCGCGGAAGGTCACA
CAGCACCTTCACCTGCGGAGGCTGGCCTGTATGAGGAGAAGCAGCACCAG
CACCAACAGCAGCAGCAGGAGTGCCAGCAGCCGCAGCAACAGCTGGACCC
AGCCTTGTGGGCCGTTATCAAGAAGCACGTCTCACACGAAACGGGGGGGT
CGGGGTTGTCCGCGAAGCGGCGCCCCCGGTGGGCTTTTTGGGGACGCATT
GTCTTCTCCAAGCCGGTGGTGGCGACAGCGAACACCCCCAAAGGGCTGCG
CGACGTTATGCTCAACTTCAACTTGGCCAACGGAGAGGCCGGAGAGAAGC
TGCTTTTGCTTGCAAGAGCAGCATCCCTACGCTTCAATGTTAAGGCAGGT
GAAGGCTGCGAGGTTCAGGCATCCTCTCCCACGGACCGGACGGCCCGGTC
ACTATCGGATTCCGCGGTCCTGGTGAGAGCGAAGCGCCCCAGGTTGGAAA
TGGAACCGGCTCCAGTTCACAATCTGGAAGCAGGATGCGTCCATCTAGGC
TGGAAAGCTTGCGCGGAAGGTCACACAGCACCTTCACCTGCGGAGGCTGG
CCTGTATGAGGAGAAGCAGCACCAGCACCAACAGCAGCAGCAGGAGTGCC
AGCAGCCGCAGCAACAGCTGGACCCAGCCTTGTGGGCCGTTATCAAGAAG
GGAGAGTGCTGTCCTTTCGATTGCTCCTTCGCCGTGTCCGGGCTGGCCTA
CTGCAAGCACTACCACTGCCGCCGGGGGTGCCGCCACCGGGCCGGCGCCG
AGGCCGGCAAGCCCTTCCAGACCAACCAGATGGAAAAGGTCCGCAAGCAC
TCCCACAAGCACGCCCTCGCCTCTCTCCACGGGAGACAACCCGACGCCTC
CCCCGGGGGGATGACGGGCGTCAGCCCGGAACCCCCCCTCGGCGGCGGTG
CCCCCAGCAGCAGAAGCCACGACGATGGAGAGTGCTGTCCTTTCGATTGC
TCCTTCGCCGTGTCCGGGCTGGCCTACTGCAAGCACTACCACTGCCGCCG
GGGGTGCCGCCACCGGGCCGGCGCCGAGGCCGGCAAGCCCTTCCAGACCA
ACCAGATGGAAAAGGTCCGCAAGCACTCCCACAAGCACGCCCTCGCCTCT
CTCCACGGGAGACAACCCGACGCCTCCCCCGGGGGGATGACGGGCGTCAG
CCCGGAACCCCCCCTCGGCGGCGGTGCCCCCAGCAGCAGAAGCCACGACG
AT
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